RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 BIRC2Q13490 618 aa16.32■□□□□ 0.2
CLK3-223ENST00000568488 CCDC40Q4G0X9 1142 aa16.32■□□□□ 0.2
CLK3-223ENST00000568488 DCAF12Q5T6F0 453 aa16.32■□□□□ 0.2
CLK3-223ENST00000568488 OTUD1Q5VV17 481 aaPredicted RBP16.32■□□□□ 0.2
CLK3-223ENST00000568488 ZNF787Q6DD87 383 aa16.32■□□□□ 0.2
CLK3-223ENST00000568488 FAM129CQ86XR2 697 aa16.32■□□□□ 0.2
CLK3-223ENST00000568488 UNC5BQ8IZJ1 945 aa16.32■□□□□ 0.2
CLK3-223ENST00000568488 WDTC1Q8N5D0 677 aa16.32■□□□□ 0.2
CLK3-223ENST00000568488 EFCAB3Q8N7B9 438 aa16.32■□□□□ 0.2
CLK3-223ENST00000568488 AGBL5Q8NDL9 886 aa16.32■□□□□ 0.2
CLK3-223ENST00000568488 CCL4L1Q8NHW4 92 aa16.32■□□□□ 0.2
CLK3-223ENST00000568488 OR1E3Q8WZA6 343 aa16.32■□□□□ 0.2
CLK3-223ENST00000568488 C1orf74Q96LT6 269 aa16.32■□□□□ 0.2
CLK3-223ENST00000568488 ASPSCR1Q9BZE9 553 aa16.32■□□□□ 0.2
CLK3-223ENST00000568488 ZYG11BQ9C0D3 744 aa16.32■□□□□ 0.2
CLK3-223ENST00000568488 TMEM168Q9H0V1 697 aa16.32■□□□□ 0.2
CLK3-223ENST00000568488 UBE2TQ9NPD8 197 aaPredicted RBP16.32■□□□□ 0.2
CLK3-223ENST00000568488 CNTN6Q9UQ52 1028 aa16.32■□□□□ 0.2
CLK3-223ENST00000568488 CHD5Q8TDI0 1954 aa16.31■□□□□ 0.2
CLK3-223ENST00000568488 LOC101059948A0A1B0GTJ6 334 aa16.31■□□□□ 0.2
CLK3-223ENST00000568488 K7ELQ4 463 aaPredicted RBP16.31■□□□□ 0.2
CLK3-223ENST00000568488 PMM2O15305 246 aa16.31■□□□□ 0.2
CLK3-223ENST00000568488 ZW10O43264 779 aa16.31■□□□□ 0.2
CLK3-223ENST00000568488 COL8A1P27658 744 aa16.31■□□□□ 0.2
CLK3-223ENST00000568488 USP8P40818 1118 aa16.31■□□□□ 0.2
CLK3-223ENST00000568488 SLC6A3Q01959 620 aa16.31■□□□□ 0.2
CLK3-223ENST00000568488 CAPRIN2Q6IMN6 1127 aaKnown RBP16.31■□□□□ 0.2
CLK3-223ENST00000568488 FOXR2Q6PJQ5 311 aa16.31■□□□□ 0.2
CLK3-223ENST00000568488 OLFML1Q6UWY5 402 aa16.31■□□□□ 0.2
CLK3-223ENST00000568488 HEATR4Q86WZ0 1026 aa16.31■□□□□ 0.2
CLK3-223ENST00000568488 ARHGEF2Q92974 986 aaKnown RBP16.31■□□□□ 0.2
CLK3-223ENST00000568488 NPY6RQ99463 290 aa16.31■□□□□ 0.2
CLK3-223ENST00000568488 DDA1Q9BW61 102 aa16.31■□□□□ 0.2
CLK3-223ENST00000568488 SYNCQ9H7C4 482 aa16.31■□□□□ 0.2
CLK3-223ENST00000568488 OCIAD1Q9NX40 245 aa16.31■□□□□ 0.2
CLK3-223ENST00000568488 RRN3Q9NYV6 651 aa16.31■□□□□ 0.2
CLK3-223ENST00000568488 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.31■□□□□ 0.2
CLK3-223ENST00000568488 DGKBQ9Y6T7 804 aa16.31■□□□□ 0.2
CLK3-223ENST00000568488 ANKRD17O75179 2603 aaKnown RBP16.31■□□□□ 0.2
CLK3-223ENST00000568488 CENPEQ02224 2701 aa16.3■□□□□ 0.2
CLK3-223ENST00000568488 TMEM202A6NGA9 273 aa16.3■□□□□ 0.2
CLK3-223ENST00000568488 K7EM74 188 aa16.3■□□□□ 0.2
CLK3-223ENST00000568488 ERBB2P04626 1255 aa16.3■□□□□ 0.2
CLK3-223ENST00000568488 LIMK2P53671 638 aa16.3■□□□□ 0.2
CLK3-223ENST00000568488 GEMIN4P57678 1058 aaKnown RBP16.3■□□□□ 0.2
CLK3-223ENST00000568488 RAD51Q06609 339 aa16.3■□□□□ 0.2
CLK3-223ENST00000568488 TMEM52BQ4KMG9 183 aa16.3■□□□□ 0.2
CLK3-223ENST00000568488 ATP1A1-AS1Q5TC04 95 aa16.3■□□□□ 0.2
CLK3-223ENST00000568488 NKAIN2Q5VXU1 208 aa16.3■□□□□ 0.2
CLK3-223ENST00000568488 ANKS6Q68DC2 871 aa16.3■□□□□ 0.2
CLK3-223ENST00000568488 KDELC2Q7Z4H8 507 aa16.3■□□□□ 0.2
CLK3-223ENST00000568488 NLGN4XQ8N0W4 816 aa16.3■□□□□ 0.2
CLK3-223ENST00000568488 NLGN4YQ8NFZ3 816 aaPredicted RBP16.3■□□□□ 0.2
CLK3-223ENST00000568488 OR56A4Q8NGH8 313 aa16.3■□□□□ 0.2
CLK3-223ENST00000568488 KIAA1524Q8TCG1 905 aa16.3■□□□□ 0.2
CLK3-223ENST00000568488 VOPP1Q96AW1 172 aa16.3■□□□□ 0.2
CLK3-223ENST00000568488 EFHD1Q9BUP0 239 aa16.3■□□□□ 0.2
CLK3-223ENST00000568488 CYP4F12Q9HCS2 524 aa16.3■□□□□ 0.2
CLK3-223ENST00000568488 PRDM8Q9NQV8 689 aa16.3■□□□□ 0.2
CLK3-223ENST00000568488 ZNF212Q9UDV6 495 aa16.3■□□□□ 0.2
CLK3-223ENST00000568488 PILRAQ9UKJ1 303 aa16.3■□□□□ 0.2
CLK3-223ENST00000568488 STAP1Q9ULZ2 295 aa16.3■□□□□ 0.2
CLK3-223ENST00000568488 HPCAL4Q9UM19 191 aa16.3■□□□□ 0.2
CLK3-223ENST00000568488 TTLL8A6PVC2 850 aa16.29■□□□□ 0.2
CLK3-223ENST00000568488 CACNB4O00305 520 aaPredicted RBP16.29■□□□□ 0.2
CLK3-223ENST00000568488 P4HA2O15460 535 aa16.29■□□□□ 0.2
CLK3-223ENST00000568488 SEMA7AO75326 666 aa16.29■□□□□ 0.2
CLK3-223ENST00000568488 F9P00740 461 aa16.29■□□□□ 0.2
CLK3-223ENST00000568488 TCN2P20062 427 aa16.29■□□□□ 0.2
CLK3-223ENST00000568488 MAP4P27816 1152 aaKnown RBP16.29■□□□□ 0.2
CLK3-223ENST00000568488 CD1CP29017 333 aa16.29■□□□□ 0.2
CLK3-223ENST00000568488 PPM1FP49593 454 aaPredicted RBP16.29■□□□□ 0.2
CLK3-223ENST00000568488 MC1RQ01726 317 aa16.29■□□□□ 0.2
CLK3-223ENST00000568488 ELP6Q0PNE2 266 aa16.29■□□□□ 0.2
CLK3-223ENST00000568488 TRA2AQ13595 282 aaKnown RBP eCLIP16.29■□□□□ 0.2
CLK3-223ENST00000568488 SLC26A9Q7LBE3 791 aa16.29■□□□□ 0.2
CLK3-223ENST00000568488 NETO2Q8NC67 525 aa16.29■□□□□ 0.2
CLK3-223ENST00000568488 PLA2G15Q8NCC3 412 aa16.29■□□□□ 0.2
CLK3-223ENST00000568488 STARD8Q92502 1023 aa16.29■□□□□ 0.2
CLK3-223ENST00000568488 TBCBQ99426 244 aa16.29■□□□□ 0.2
CLK3-223ENST00000568488 ZMYND15Q9H091 742 aa16.29■□□□□ 0.2
CLK3-223ENST00000568488 SUDS3Q9H7L9 328 aaPredicted RBP16.29■□□□□ 0.2
CLK3-223ENST00000568488 FGF22Q9HCT0 170 aa16.29■□□□□ 0.2
CLK3-223ENST00000568488 SPATS2LQ9NUQ6 558 aaKnown RBP16.29■□□□□ 0.2
CLK3-223ENST00000568488 RMND1Q9NWS8 449 aa16.29■□□□□ 0.2
CLK3-223ENST00000568488 DNAI1Q9UI46 699 aa16.29■□□□□ 0.2
CLK3-223ENST00000568488 MKRN2OSH3BPM6 223 aa16.28■□□□□ 0.2
CLK3-223ENST00000568488 PRKCGP05129 697 aa16.28■□□□□ 0.2
CLK3-223ENST00000568488 RNF224P0DH78 156 aa16.28■□□□□ 0.2
CLK3-223ENST00000568488 ETFBP38117 255 aa16.28■□□□□ 0.2
CLK3-223ENST00000568488 LIG3P49916 1009 aa16.28■□□□□ 0.2
CLK3-223ENST00000568488 COPB1P53618 953 aaKnown RBP16.28■□□□□ 0.2
CLK3-223ENST00000568488 SNX16P57768 344 aa16.28■□□□□ 0.2
CLK3-223ENST00000568488 LRRC63Q05C16 580 aa16.28■□□□□ 0.2
CLK3-223ENST00000568488 MTM1Q13496 603 aa16.28■□□□□ 0.2
CLK3-223ENST00000568488 CLPPQ16740 277 aaPredicted RBP16.28■□□□□ 0.2
CLK3-223ENST00000568488 ACBD5Q5T8D3 534 aaPredicted RBP16.28■□□□□ 0.2
CLK3-223ENST00000568488 ZNF658Q5TYW1 1059 aaPredicted RBP16.28■□□□□ 0.2
CLK3-223ENST00000568488 ASB18Q6ZVZ8 466 aa16.28■□□□□ 0.2
CLK3-223ENST00000568488 ZNF354CQ86Y25 554 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms