RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 PHTF1Q9UMS5 762 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 ZNF148Q9UQR1 794 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 DMTF1Q9Y222 760 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 R3HDM2Q9Y2K5 976 aaKnown RBP12.26□□□□□ -0.45
SF3B3-208ENST00000567250 FADS3Q9Y5Q0 445 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 SAR1BQ9Y6B6 198 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 LRRK1Q38SD2 2015 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 TRPM6Q9BX84 2022 aa12.25□□□□□ -0.45
SF3B3-208ENST00000567250 TTC24A2A3L6 582 aaPredicted RBP12.25□□□□□ -0.45
SF3B3-208ENST00000567250 C5orf60A6NFR6 353 aa12.25□□□□□ -0.45
SF3B3-208ENST00000567250 PRR5-ARHGAP8B1AHC4 643 aa12.25□□□□□ -0.45
SF3B3-208ENST00000567250 AREL1O15033 823 aa12.25□□□□□ -0.45
SF3B3-208ENST00000567250 LATO43561 262 aa12.25□□□□□ -0.45
SF3B3-208ENST00000567250 FOXD2O60548 495 aaPredicted RBP12.25□□□□□ -0.45
SF3B3-208ENST00000567250 RNGTTO60942 597 aaKnown RBP12.25□□□□□ -0.45
SF3B3-208ENST00000567250 ITGAVP06756 1048 aa12.25□□□□□ -0.45
SF3B3-208ENST00000567250 CD27P26842 260 aa12.25□□□□□ -0.45
SF3B3-208ENST00000567250 MMP12P39900 470 aa12.25□□□□□ -0.45
SF3B3-208ENST00000567250 MPLP40238 635 aa12.25□□□□□ -0.45
SF3B3-208ENST00000567250 GEMP55040 296 aa12.25□□□□□ -0.45
SF3B3-208ENST00000567250 ETF1P62495 437 aaKnown RBP12.25□□□□□ -0.45
SF3B3-208ENST00000567250 SKOR1P84550 965 aa12.25□□□□□ -0.45
SF3B3-208ENST00000567250 LMNB2Q03252 620 aa12.25□□□□□ -0.45
SF3B3-208ENST00000567250 NIPAL4Q0D2K0 466 aa12.25□□□□□ -0.45
SF3B3-208ENST00000567250 MPP3Q13368 585 aa12.25□□□□□ -0.45
SF3B3-208ENST00000567250 OASLQ15646 514 aaKnown RBP12.25□□□□□ -0.45
SF3B3-208ENST00000567250 ANKRD20A2Q5SQ80 823 aa12.25□□□□□ -0.45
SF3B3-208ENST00000567250 ANKRD20A1Q5TYW2 823 aa12.25□□□□□ -0.45
SF3B3-208ENST00000567250 ANKRD20A3Q5VUR7 823 aa12.25□□□□□ -0.45
SF3B3-208ENST00000567250 PEAR1Q5VY43 1037 aaPredicted RBP12.25□□□□□ -0.45
SF3B3-208ENST00000567250 CCDC70Q6NSX1 233 aa12.25□□□□□ -0.45
SF3B3-208ENST00000567250 DPPA4Q7L190 304 aa12.25□□□□□ -0.45
SF3B3-208ENST00000567250 CCDC89Q8N998 374 aa12.25□□□□□ -0.45
SF3B3-208ENST00000567250 CEP76Q8TAP6 659 aa12.25□□□□□ -0.45
SF3B3-208ENST00000567250 C1orf54Q8WWF1 131 aa12.25□□□□□ -0.45
SF3B3-208ENST00000567250 DNASE2BQ8WZ79 361 aa12.25□□□□□ -0.45
SF3B3-208ENST00000567250 RUBCNQ92622 972 aa12.25□□□□□ -0.45
SF3B3-208ENST00000567250 RTP4Q96DX8 246 aa12.25□□□□□ -0.45
SF3B3-208ENST00000567250 RBM15Q96T37 977 aaKnown RBP eCLIP12.25□□□□□ -0.45
SF3B3-208ENST00000567250 PCDH12Q9NPG4 1184 aa12.25□□□□□ -0.45
SF3B3-208ENST00000567250 AAR2Q9Y312 384 aaKnown RBP12.25□□□□□ -0.45
SF3B3-208ENST00000567250 A0A1W2PPC4 97 aa12.24□□□□□ -0.45
SF3B3-208ENST00000567250 A0A1W2PQU0 124 aa12.24□□□□□ -0.45
SF3B3-208ENST00000567250 KIF2AO00139 706 aaPredicted RBP12.24□□□□□ -0.45
SF3B3-208ENST00000567250 FZD6O60353 706 aa12.24□□□□□ -0.45
SF3B3-208ENST00000567250 TUBB4AP04350 444 aa12.24□□□□□ -0.45
SF3B3-208ENST00000567250 IGHV4-34P06331 123 aa12.24□□□□□ -0.45
SF3B3-208ENST00000567250 MMP2P08253 660 aa12.24□□□□□ -0.45
SF3B3-208ENST00000567250 ELFN1P0C7U0 828 aa12.24□□□□□ -0.45
SF3B3-208ENST00000567250 TIMP2P16035 220 aa12.24□□□□□ -0.45
SF3B3-208ENST00000567250 ITPKAP23677 461 aa12.24□□□□□ -0.45
SF3B3-208ENST00000567250 CASQ1P31415 396 aa12.24□□□□□ -0.45
SF3B3-208ENST00000567250 PPP2CBP62714 309 aa12.24□□□□□ -0.45
SF3B3-208ENST00000567250 PPP2CAP67775 309 aa12.24□□□□□ -0.45
SF3B3-208ENST00000567250 FAM193AP78312 1265 aa12.24□□□□□ -0.45
SF3B3-208ENST00000567250 SGCGQ13326 291 aa12.24□□□□□ -0.45
SF3B3-208ENST00000567250 ARHGEF7Q14155 803 aa12.24□□□□□ -0.45
SF3B3-208ENST00000567250 SIX1Q15475 284 aaPredicted RBP12.24□□□□□ -0.45
SF3B3-208ENST00000567250 PCSK7Q16549 785 aa12.24□□□□□ -0.45
SF3B3-208ENST00000567250 TMEM52BQ4KMG9 183 aa12.24□□□□□ -0.45
SF3B3-208ENST00000567250 LRRC73Q5JTD7 316 aa12.24□□□□□ -0.45
SF3B3-208ENST00000567250 GSTA5Q7RTV2 222 aa12.24□□□□□ -0.45
SF3B3-208ENST00000567250 ZSWIM9Q86XI8 627 aa12.24□□□□□ -0.45
SF3B3-208ENST00000567250 C17orf53Q8N3J3 647 aaPredicted RBP12.24□□□□□ -0.45
SF3B3-208ENST00000567250 DEFB119Q8N690 84 aa12.24□□□□□ -0.45
SF3B3-208ENST00000567250 GPR161Q8N6U8 529 aaKnown RBP12.24□□□□□ -0.45
SF3B3-208ENST00000567250 FAM71DQ8N9W8 422 aa12.24□□□□□ -0.45
SF3B3-208ENST00000567250 DENND6BQ8NEG7 585 aa12.24□□□□□ -0.45
SF3B3-208ENST00000567250 LPCAT1Q8NF37 534 aa12.24□□□□□ -0.45
SF3B3-208ENST00000567250 CCDC110Q8TBZ0 833 aa12.24□□□□□ -0.45
SF3B3-208ENST00000567250 COG1Q8WTW3 980 aa12.24□□□□□ -0.45
SF3B3-208ENST00000567250 PIGKQ92643 395 aa12.24□□□□□ -0.45
SF3B3-208ENST00000567250 SKA1Q96BD8 255 aa12.24□□□□□ -0.45
SF3B3-208ENST00000567250 RMDN1Q96DB5 314 aa12.24□□□□□ -0.45
SF3B3-208ENST00000567250 FAM122AQ96E09 287 aa12.24□□□□□ -0.45
SF3B3-208ENST00000567250 PHF12Q96QT6 1004 aa12.24□□□□□ -0.45
SF3B3-208ENST00000567250 SRPK1Q96SB4 655 aaKnown RBP12.24□□□□□ -0.45
SF3B3-208ENST00000567250 ATXN2Q99700 1313 aaKnown RBP12.24□□□□□ -0.45
SF3B3-208ENST00000567250 MIR1-1HGQ9H1L0 117 aa12.24□□□□□ -0.45
SF3B3-208ENST00000567250 C10orf88Q9H8K7 445 aa12.24□□□□□ -0.45
SF3B3-208ENST00000567250 KCTD5Q9NXV2 234 aa12.24□□□□□ -0.45
SF3B3-208ENST00000567250 RNF14Q9UBS8 474 aa12.24□□□□□ -0.45
SF3B3-208ENST00000567250 EIF2B4Q9UI10 523 aaKnown RBP12.24□□□□□ -0.45
SF3B3-208ENST00000567250 ITM2BQ9Y287 266 aa12.24□□□□□ -0.45
SF3B3-208ENST00000567250 MYO15AQ9UKN7 3530 aa12.23□□□□□ -0.45
SF3B3-208ENST00000567250 A0A0J9YYE9 177 aa12.23□□□□□ -0.45
SF3B3-208ENST00000567250 A0A1B0GTW7 788 aa12.23□□□□□ -0.45
SF3B3-208ENST00000567250 CAPN8A6NHC0 703 aa12.23□□□□□ -0.45
SF3B3-208ENST00000567250 PSMD11O00231 422 aa12.23□□□□□ -0.45
SF3B3-208ENST00000567250 PHF2O75151 1096 aa12.23□□□□□ -0.45
SF3B3-208ENST00000567250 PMPCBO75439 489 aa12.23□□□□□ -0.45
SF3B3-208ENST00000567250 GCATO75600 419 aa12.23□□□□□ -0.45
SF3B3-208ENST00000567250 TM7SF2O76062 418 aa12.23□□□□□ -0.45
SF3B3-208ENST00000567250 MT-CYBP00156 380 aaPredicted RBP12.23□□□□□ -0.45
SF3B3-208ENST00000567250 IFNB1P01574 187 aa12.23□□□□□ -0.45
SF3B3-208ENST00000567250 TRBC1P01850 177 aa12.23□□□□□ -0.45
SF3B3-208ENST00000567250 ZNF30P17039 623 aa12.23□□□□□ -0.45
SF3B3-208ENST00000567250 HLA-DPA1P20036 260 aa12.23□□□□□ -0.45
SF3B3-208ENST00000567250 HNRNPA2B1P22626 353 aaKnown RBP12.23□□□□□ -0.45
SF3B3-208ENST00000567250 PSMB4P28070 264 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms