RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 GDF10P55107 478 aa19.69■□□□□ 0.74
CLN3-225ENST00000566824 WDR45BQ5MNZ6 344 aa19.69■□□□□ 0.74
CLN3-225ENST00000566824 BRAT1Q6PJG6 821 aa19.69■□□□□ 0.74
CLN3-225ENST00000566824 LAYNQ6UX15 382 aa19.69■□□□□ 0.74
CLN3-225ENST00000566824 HORMAD1Q86X24 394 aa19.69■□□□□ 0.74
CLN3-225ENST00000566824 CDKL3Q8IVW4 592 aaPredicted RBP19.69■□□□□ 0.74
CLN3-225ENST00000566824 COG1Q8WTW3 980 aa19.69■□□□□ 0.74
CLN3-225ENST00000566824 PIH1D2Q8WWB5 315 aa19.69■□□□□ 0.74
CLN3-225ENST00000566824 RAB7BQ96AH8 199 aa19.69■□□□□ 0.74
CLN3-225ENST00000566824 TADA1Q96BN2 335 aa19.69■□□□□ 0.74
CLN3-225ENST00000566824 HINFPQ9BQA5 517 aa19.69■□□□□ 0.74
CLN3-225ENST00000566824 TDRD1Q9BXT4 1180 aaKnown RBP19.69■□□□□ 0.74
CLN3-225ENST00000566824 SLC25A51Q9H1U9 297 aa19.69■□□□□ 0.74
CLN3-225ENST00000566824 A0A1W2PPC4 97 aa19.68■□□□□ 0.74
CLN3-225ENST00000566824 LIASO43766 372 aa19.68■□□□□ 0.74
CLN3-225ENST00000566824 CPP00450 1065 aa19.68■□□□□ 0.74
CLN3-225ENST00000566824 CTPS1P17812 591 aa19.68■□□□□ 0.74
CLN3-225ENST00000566824 CD27P26842 260 aa19.68■□□□□ 0.74
CLN3-225ENST00000566824 MMP12P39900 470 aa19.68■□□□□ 0.74
CLN3-225ENST00000566824 GNG11P61952 73 aa19.68■□□□□ 0.74
CLN3-225ENST00000566824 RALGDSQ12967 914 aa19.68■□□□□ 0.74
CLN3-225ENST00000566824 SNX1Q13596 522 aa19.68■□□□□ 0.74
CLN3-225ENST00000566824 SYCP2LQ5T4T6 812 aa19.68■□□□□ 0.74
CLN3-225ENST00000566824 CFAP58Q5T655 872 aa19.68■□□□□ 0.74
CLN3-225ENST00000566824 KDM7AQ6ZMT4 941 aa19.68■□□□□ 0.74
CLN3-225ENST00000566824 PID1Q7Z2X4 250 aa19.68■□□□□ 0.74
CLN3-225ENST00000566824 KDELC2Q7Z4H8 507 aa19.68■□□□□ 0.74
CLN3-225ENST00000566824 TTC13Q8NBP0 860 aa19.68■□□□□ 0.74
CLN3-225ENST00000566824 OXNAD1Q96HP4 312 aaPredicted RBP19.68■□□□□ 0.74
CLN3-225ENST00000566824 SLC6A18Q96N87 628 aa19.68■□□□□ 0.74
CLN3-225ENST00000566824 MYOCQ99972 504 aa19.68■□□□□ 0.74
CLN3-225ENST00000566824 TM9SF3Q9HD45 589 aa19.68■□□□□ 0.74
CLN3-225ENST00000566824 FZD3Q9NPG1 666 aa19.68■□□□□ 0.74
CLN3-225ENST00000566824 KCND1Q9NSA2 647 aa19.68■□□□□ 0.74
CLN3-225ENST00000566824 RXFP3Q9NSD7 469 aa19.68■□□□□ 0.74
CLN3-225ENST00000566824 SEMA4GQ9NTN9 838 aa19.68■□□□□ 0.74
CLN3-225ENST00000566824 KLHL8Q9P2G9 620 aaPredicted RBP19.68■□□□□ 0.74
CLN3-225ENST00000566824 COQ6Q9Y2Z9 468 aa19.68■□□□□ 0.74
CLN3-225ENST00000566824 TMEM131Q92545 1883 aa19.67■□□□□ 0.74
CLN3-225ENST00000566824 NEMP1O14524 444 aa19.67■□□□□ 0.74
CLN3-225ENST00000566824 ZNF185O15231 689 aa19.67■□□□□ 0.74
CLN3-225ENST00000566824 RAD51BO15315 384 aa19.67■□□□□ 0.74
CLN3-225ENST00000566824 SLC31A1O15431 190 aa19.67■□□□□ 0.74
CLN3-225ENST00000566824 MTSS1O43312 755 aa19.67■□□□□ 0.74
CLN3-225ENST00000566824 TSPAN6O43657 245 aa19.67■□□□□ 0.74
CLN3-225ENST00000566824 WNT1P04628 370 aa19.67■□□□□ 0.74
CLN3-225ENST00000566824 SERPINF2P08697 491 aa19.67■□□□□ 0.74
CLN3-225ENST00000566824 ALPIP09923 528 aa19.67■□□□□ 0.74
CLN3-225ENST00000566824 XPAP23025 273 aaPredicted RBP19.67■□□□□ 0.74
CLN3-225ENST00000566824 CES1P23141 567 aa19.67■□□□□ 0.74
CLN3-225ENST00000566824 FAM193AP78312 1265 aa19.67■□□□□ 0.74
CLN3-225ENST00000566824 BNC1Q01954 994 aa19.67■□□□□ 0.74
CLN3-225ENST00000566824 CCDC15Q0P6D6 951 aa19.67■□□□□ 0.74
CLN3-225ENST00000566824 TMEM52BQ4KMG9 183 aa19.67■□□□□ 0.74
CLN3-225ENST00000566824 ARMC12Q5T9G4 340 aa19.67■□□□□ 0.74
CLN3-225ENST00000566824 NEK5Q6P3R8 708 aa19.67■□□□□ 0.74
CLN3-225ENST00000566824 PAF1Q8N7H5 531 aa19.67■□□□□ 0.74
CLN3-225ENST00000566824 FAM71DQ8N9W8 422 aa19.67■□□□□ 0.74
CLN3-225ENST00000566824 CCDC110Q8TBZ0 833 aa19.67■□□□□ 0.74
CLN3-225ENST00000566824 SPOCK2Q92563 424 aa19.67■□□□□ 0.74
CLN3-225ENST00000566824 OSBPL9Q96SU4 736 aa19.67■□□□□ 0.74
CLN3-225ENST00000566824 TMEM121Q9BTD3 319 aa19.67■□□□□ 0.74
CLN3-225ENST00000566824 EIF2AK3Q9NZJ5 1116 aaKnown RBP19.67■□□□□ 0.74
CLN3-225ENST00000566824 B4GALT6Q9UBX8 382 aa19.67■□□□□ 0.74
CLN3-225ENST00000566824 ZNF806P0C7X5 589 aa19.66■□□□□ 0.74
CLN3-225ENST00000566824 IRX4P78413 519 aa19.66■□□□□ 0.74
CLN3-225ENST00000566824 OASLQ15646 514 aaKnown RBP19.66■□□□□ 0.74
CLN3-225ENST00000566824 PCSK7Q16549 785 aa19.66■□□□□ 0.74
CLN3-225ENST00000566824 LONRF2Q1L5Z9 754 aa19.66■□□□□ 0.74
CLN3-225ENST00000566824 ANKRD20A2Q5SQ80 823 aa19.66■□□□□ 0.74
CLN3-225ENST00000566824 ANKRD20A1Q5TYW2 823 aa19.66■□□□□ 0.74
CLN3-225ENST00000566824 ANKRD20A3Q5VUR7 823 aa19.66■□□□□ 0.74
CLN3-225ENST00000566824 KDELC1Q6UW63 502 aa19.66■□□□□ 0.74
CLN3-225ENST00000566824 PRUNE1Q86TP1 453 aa19.66■□□□□ 0.74
CLN3-225ENST00000566824 RASGEF1CQ8N431 466 aa19.66■□□□□ 0.74
CLN3-225ENST00000566824 FEM1CQ96JP0 617 aa19.66■□□□□ 0.74
CLN3-225ENST00000566824 TRIB3Q96RU7 358 aa19.66■□□□□ 0.74
CLN3-225ENST00000566824 C1QTNF2Q9BXJ5 285 aa19.66■□□□□ 0.74
CLN3-225ENST00000566824 PCDH9Q9HC56 1237 aa19.66■□□□□ 0.74
CLN3-225ENST00000566824 VPS45Q9NRW7 570 aa19.66■□□□□ 0.74
CLN3-225ENST00000566824 SNX12Q9UMY4 172 aa19.66■□□□□ 0.74
CLN3-225ENST00000566824 DYNC1LI1Q9Y6G9 523 aaKnown RBP19.66■□□□□ 0.74
CLN3-225ENST00000566824 NPIPB15A6NHN6 443 aaPredicted RBP19.65■□□□□ 0.74
CLN3-225ENST00000566824 GOLGA8CPA6NN73 597 aa19.65■□□□□ 0.74
CLN3-225ENST00000566824 BCAT2O15382 392 aaPredicted RBP19.65■□□□□ 0.74
CLN3-225ENST00000566824 PMPCBO75439 489 aa19.65■□□□□ 0.74
CLN3-225ENST00000566824 PAK4O96013 591 aaPredicted RBP19.65■□□□□ 0.74
CLN3-225ENST00000566824 CFIP05156 583 aa19.65■□□□□ 0.74
CLN3-225ENST00000566824 GM2AP17900 193 aa19.65■□□□□ 0.74
CLN3-225ENST00000566824 LHCGRP22888 699 aa19.65■□□□□ 0.74
CLN3-225ENST00000566824 CSNK1EP49674 416 aaKnown RBP19.65■□□□□ 0.74
CLN3-225ENST00000566824 LIG3P49916 1009 aa19.65■□□□□ 0.74
CLN3-225ENST00000566824 RPS21P63220 83 aaKnown RBP19.65■□□□□ 0.74
CLN3-225ENST00000566824 CSRP2Q16527 193 aa19.65■□□□□ 0.74
CLN3-225ENST00000566824 TRIM61Q5EBN2 209 aa19.65■□□□□ 0.74
CLN3-225ENST00000566824 KIAA1161Q6NSJ0 714 aa19.65■□□□□ 0.74
CLN3-225ENST00000566824 DPPA4Q7L190 304 aa19.65■□□□□ 0.74
CLN3-225ENST00000566824 TSPAN33Q86UF1 283 aa19.65■□□□□ 0.74
CLN3-225ENST00000566824 LPCAT1Q8NF37 534 aa19.65■□□□□ 0.74
CLN3-225ENST00000566824 SERAC1Q96JX3 654 aa19.65■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms