RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 PQLC3Q8N755 202 aa13.5□□□□□ -0.25
CLK3-216ENST00000564468 CCNYQ8ND76 341 aa13.5□□□□□ -0.25
CLK3-216ENST00000564468 RHBDD1Q8TEB9 315 aa13.5□□□□□ -0.25
CLK3-216ENST00000564468 MAML1Q92585 1016 aa13.5□□□□□ -0.25
CLK3-216ENST00000564468 HDAC11Q96DB2 347 aa13.5□□□□□ -0.25
CLK3-216ENST00000564468 IFT43Q96FT9 208 aa13.5□□□□□ -0.25
CLK3-216ENST00000564468 POLR1EQ9GZS1 481 aaKnown RBP13.5□□□□□ -0.25
CLK3-216ENST00000564468 BRD8Q9H0E9 1235 aa13.5□□□□□ -0.25
CLK3-216ENST00000564468 NT5MQ9NPB1 228 aa13.5□□□□□ -0.25
CLK3-216ENST00000564468 FZD3Q9NPG1 666 aa13.5□□□□□ -0.25
CLK3-216ENST00000564468 PCDH12Q9NPG4 1184 aa13.5□□□□□ -0.25
CLK3-216ENST00000564468 PCOLCE2Q9UKZ9 415 aa13.5□□□□□ -0.25
CLK3-216ENST00000564468 ITM2BQ9Y287 266 aa13.5□□□□□ -0.25
CLK3-216ENST00000564468 COL5A1P20908 1838 aaPredicted RBP13.5□□□□□ -0.25
CLK3-216ENST00000564468 DSPP15924 2871 aaKnown RBP13.5□□□□□ -0.25
CLK3-216ENST00000564468 TRAFD1O14545 582 aaPredicted RBP13.49□□□□□ -0.25
CLK3-216ENST00000564468 PPP1R12AO14974 1030 aaPredicted RBP13.49□□□□□ -0.25
CLK3-216ENST00000564468 MUSKO15146 869 aa13.49□□□□□ -0.25
CLK3-216ENST00000564468 MMP20O60882 483 aa13.49□□□□□ -0.25
CLK3-216ENST00000564468 TRIM16O95361 564 aa13.49□□□□□ -0.25
CLK3-216ENST00000564468 CCNB1P14635 433 aa13.49□□□□□ -0.25
CLK3-216ENST00000564468 CR2P20023 1033 aa13.49□□□□□ -0.25
CLK3-216ENST00000564468 CA4P22748 312 aa13.49□□□□□ -0.25
CLK3-216ENST00000564468 GSDMDP57764 484 aa13.49□□□□□ -0.25
CLK3-216ENST00000564468 FAM193AP78312 1265 aa13.49□□□□□ -0.25
CLK3-216ENST00000564468 SIM1P81133 766 aaPredicted RBP13.49□□□□□ -0.25
CLK3-216ENST00000564468 ITKQ08881 620 aa13.49□□□□□ -0.25
CLK3-216ENST00000564468 TFDP2Q14188 446 aa13.49□□□□□ -0.25
CLK3-216ENST00000564468 PTK2BQ14289 1009 aa13.49□□□□□ -0.25
CLK3-216ENST00000564468 FGL2Q14314 439 aa13.49□□□□□ -0.25
CLK3-216ENST00000564468 PDK1Q15118 436 aa13.49□□□□□ -0.25
CLK3-216ENST00000564468 LRRC73Q5JTD7 316 aa13.49□□□□□ -0.25
CLK3-216ENST00000564468 SLC9A4Q6AI14 798 aa13.49□□□□□ -0.25
CLK3-216ENST00000564468 GCNT7Q6ZNI0 430 aa13.49□□□□□ -0.25
CLK3-216ENST00000564468 Q6ZSR6 202 aa13.49□□□□□ -0.25
CLK3-216ENST00000564468 PTAR1Q7Z6K3 402 aaPredicted RBP13.49□□□□□ -0.25
CLK3-216ENST00000564468 GLRX5Q86SX6 157 aa13.49□□□□□ -0.25
CLK3-216ENST00000564468 KIAA1328Q86T90 577 aa13.49□□□□□ -0.25
CLK3-216ENST00000564468 SPATS2Q86XZ4 545 aaKnown RBP13.49□□□□□ -0.25
CLK3-216ENST00000564468 RFX6Q8HWS3 928 aa13.49□□□□□ -0.25
CLK3-216ENST00000564468 CCDC13Q8IYE1 715 aa13.49□□□□□ -0.25
CLK3-216ENST00000564468 SPC24Q8NBT2 197 aa13.49□□□□□ -0.25
CLK3-216ENST00000564468 OR13H1Q8NG92 308 aa13.49□□□□□ -0.25
CLK3-216ENST00000564468 SPOCK2Q92563 424 aa13.49□□□□□ -0.25
CLK3-216ENST00000564468 RNF25Q96BH1 459 aaPredicted RBP13.49□□□□□ -0.25
CLK3-216ENST00000564468 RBM22Q9NW64 420 aaKnown RBP eCLIP13.49□□□□□ -0.25
CLK3-216ENST00000564468 KCTD5Q9NXV2 234 aa13.49□□□□□ -0.25
CLK3-216ENST00000564468 DTLQ9NZJ0 730 aa13.49□□□□□ -0.25
CLK3-216ENST00000564468 GGT7Q9UJ14 662 aa13.49□□□□□ -0.25
CLK3-216ENST00000564468 APOBEC2Q9Y235 224 aaKnown RBP13.49□□□□□ -0.25
CLK3-216ENST00000564468 CA5BQ9Y2D0 317 aa13.49□□□□□ -0.25
CLK3-216ENST00000564468 HEY1Q9Y5J3 304 aa13.49□□□□□ -0.25
CLK3-216ENST00000564468 C3orf70A6NLC5 250 aaPredicted RBP13.48□□□□□ -0.25
CLK3-216ENST00000564468 SPINT1O43278 529 aa13.48□□□□□ -0.25
CLK3-216ENST00000564468 HTRA2O43464 458 aaPredicted RBP13.48□□□□□ -0.25
CLK3-216ENST00000564468 LZTS3O60299 673 aaPredicted RBP13.48□□□□□ -0.25
CLK3-216ENST00000564468 CBFA2T3O75081 653 aa13.48□□□□□ -0.25
CLK3-216ENST00000564468 ZRANB2O95218 330 aaKnown RBP eCLIP13.48□□□□□ -0.25
CLK3-216ENST00000564468 EPHA8P29322 1005 aaPredicted RBP13.48□□□□□ -0.25
CLK3-216ENST00000564468 MMP12P39900 470 aa13.48□□□□□ -0.25
CLK3-216ENST00000564468 NR2C2P49116 596 aa13.48□□□□□ -0.25
CLK3-216ENST00000564468 VAV2P52735 878 aa13.48□□□□□ -0.25
CLK3-216ENST00000564468 CLDN2P57739 230 aa13.48□□□□□ -0.25
CLK3-216ENST00000564468 MAXP61244 160 aa13.48□□□□□ -0.25
CLK3-216ENST00000564468 YPEL5P62699 121 aa13.48□□□□□ -0.25
CLK3-216ENST00000564468 GBE1Q04446 702 aa13.48□□□□□ -0.25
CLK3-216ENST00000564468 PPIDQ08752 370 aaKnown RBP13.48□□□□□ -0.25
CLK3-216ENST00000564468 AGERQ15109 404 aa13.48□□□□□ -0.25
CLK3-216ENST00000564468 TFDP3Q5H9I0 405 aa13.48□□□□□ -0.25
CLK3-216ENST00000564468 PRAMEF14Q5SWL7 426 aa13.48□□□□□ -0.25
CLK3-216ENST00000564468 ARMC12Q5T9G4 340 aa13.48□□□□□ -0.25
CLK3-216ENST00000564468 RAD9BQ6WBX8 426 aa13.48□□□□□ -0.25
CLK3-216ENST00000564468 KATNAL2Q8IYT4 538 aa13.48□□□□□ -0.25
CLK3-216ENST00000564468 RCOR2Q8IZ40 523 aa13.48□□□□□ -0.25
CLK3-216ENST00000564468 PGBD5Q8N414 524 aa13.48□□□□□ -0.25
CLK3-216ENST00000564468 PLD5Q8N7P1 536 aa13.48□□□□□ -0.25
CLK3-216ENST00000564468 TPCN2Q8NHX9 752 aa13.48□□□□□ -0.25
CLK3-216ENST00000564468 SAP25Q8TEE9 199 aa13.48□□□□□ -0.25
CLK3-216ENST00000564468 PDCD6IPQ8WUM4 868 aaKnown RBP13.48□□□□□ -0.25
CLK3-216ENST00000564468 RBM41Q96IZ5 413 aaKnown RBP13.48□□□□□ -0.25
CLK3-216ENST00000564468 BMFQ96LC9 184 aa13.48□□□□□ -0.25
CLK3-216ENST00000564468 CAMK1GQ96NX5 476 aa13.48□□□□□ -0.25
CLK3-216ENST00000564468 KLF6Q99612 283 aaPredicted RBP13.48□□□□□ -0.25
CLK3-216ENST00000564468 SEMA3CQ99985 751 aa13.48□□□□□ -0.25
CLK3-216ENST00000564468 WRAP53Q9BUR4 548 aaKnown RBP13.48□□□□□ -0.25
CLK3-216ENST00000564468 NOD2Q9HC29 1040 aa13.48□□□□□ -0.25
CLK3-216ENST00000564468 PHTF1Q9UMS5 762 aa13.48□□□□□ -0.25
CLK3-216ENST00000564468 HYOU1Q9Y4L1 999 aa13.48□□□□□ -0.25
CLK3-216ENST00000564468 KNTC1P50748 2209 aa13.48□□□□□ -0.25
CLK3-216ENST00000564468 PKD1L2Q7Z442 2459 aa13.48□□□□□ -0.25
CLK3-216ENST00000564468 DMXL2Q8TDJ6 3036 aa13.48□□□□□ -0.25
CLK3-216ENST00000564468 SPAARA0A1B0GVQ0 90 aa13.47□□□□□ -0.25
CLK3-216ENST00000564468 POM121BA6NF01 834 aa13.47□□□□□ -0.25
CLK3-216ENST00000564468 PJA2O43164 708 aa13.47□□□□□ -0.25
CLK3-216ENST00000564468 MAP3K6O95382 1288 aa13.47□□□□□ -0.25
CLK3-216ENST00000564468 CPP00450 1065 aa13.47□□□□□ -0.25
CLK3-216ENST00000564468 ELFN1P0C7U0 828 aa13.47□□□□□ -0.25
CLK3-216ENST00000564468 CYP2A6P11509 494 aaPredicted RBP13.47□□□□□ -0.25
CLK3-216ENST00000564468 C6P13671 934 aa13.47□□□□□ -0.25
CLK3-216ENST00000564468 ITIH2P19823 946 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms