RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 IL10RBQ08334 325 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 TAF8Q7Z7C8 310 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 SCD5Q86SK9 330 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 NTAN1Q96AB6 310 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 CERS2Q96G23 380 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 PANX3Q96QZ0 392 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 HEBP1Q9NRV9 189 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 VPS45Q9NRW7 570 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 VPS51Q9UID3 782 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 ERVW-1Q9UQF0 538 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 ILVBLA1L0T0 632 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 WASH3PC4AMC7 463 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 ABLIM1O14639 778 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 ESRRAP11474 423 aaPredicted RBP9.29□□□□□ -0.92
VPS39-205ENST00000562258 GRIA1P42261 906 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 RAP1GDS1P52306 607 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 CDK16Q00536 496 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 CARD16Q5EG05 197 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 ACBD5Q5T8D3 534 aaPredicted RBP9.29□□□□□ -0.92
VPS39-205ENST00000562258 IFNEQ86WN2 208 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 TP53INP2Q8IXH6 220 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 ZC3H3Q8IXZ2 948 aaKnown RBP9.29□□□□□ -0.92
VPS39-205ENST00000562258 STK40Q8N2I9 435 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 OR2AP1Q8NGE2 309 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 PIP4K2CQ8TBX8 421 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 NAT14Q8WUY8 206 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 SLC25A51Q9H1U9 297 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 SUV39H2Q9H5I1 410 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 NOD2Q9HC29 1040 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 SOHLH2Q9NX45 425 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 DNMT3BQ9UBC3 853 aaKnown RBP9.29□□□□□ -0.92
VPS39-205ENST00000562258 ADAM21Q9UKJ8 722 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 LOC100653049A0A140TA62 436 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 FAM95CA0A1B0GW59 222 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 C5orf60A6NFR6 353 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 BTNL10A8MVZ5 291 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 ISM1B1AKI9 464 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 KRT34O76011 436 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 F7P08709 466 aaPredicted RBP9.29□□□□□ -0.92
VPS39-205ENST00000562258 PCNAP12004 261 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 ATF6P18850 670 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 TSPAN8P19075 237 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 GRK3P35626 688 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 NDST2P52849 883 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 ARFIP2P53365 341 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 CRY1Q16526 586 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 FBXO48Q5FWF7 155 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 PITRM1Q5JRX3 1037 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 KIAA0319Q5VV43 1072 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 CCSAPQ6IQ19 270 aaPredicted RBP9.29□□□□□ -0.92
VPS39-205ENST00000562258 ESRP1Q6NXG1 681 aaKnown RBP9.29□□□□□ -0.92
VPS39-205ENST00000562258 RSPO2Q6UXX9 243 aaPredicted RBP9.29□□□□□ -0.92
VPS39-205ENST00000562258 OR4L1Q8NH43 312 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 DNAJC1Q96KC8 554 aaKnown RBP9.29□□□□□ -0.92
VPS39-205ENST00000562258 TEKT5Q96M29 485 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 IL12RB2Q99665 862 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 NPHS2Q9NP85 383 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 ATP8B1O43520 1251 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 B4GALT3O60512 393 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 MMP20O60882 483 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 CLASP2O75122 1294 aaKnown RBP9.29□□□□□ -0.92
VPS39-205ENST00000562258 PRAMEF1O95521 474 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 METTL18O95568 372 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 CCDC166P0CW27 439 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 GLDCP23378 1020 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 ZNF132P52740 706 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 NME5P56597 212 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 ELP6Q0PNE2 266 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 LMAN2Q12907 356 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 HIST2H2ACQ16777 129 aaPredicted RBP9.29□□□□□ -0.92
VPS39-205ENST00000562258 TRIM71Q2Q1W2 868 aaKnown RBP9.29□□□□□ -0.92
VPS39-205ENST00000562258 EMC10Q5UCC4 262 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 HIST2H2AA3Q6FI13 130 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 TTC27Q6P3X3 843 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 FAM171BQ6P995 826 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 PPWD1Q96BP3 646 aaKnown RBP9.29□□□□□ -0.92
VPS39-205ENST00000562258 BTBD1Q9H0C5 482 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 ZNF334Q9HCZ1 680 aaPredicted RBP9.29□□□□□ -0.92
VPS39-205ENST00000562258 FKBPLQ9UIM3 349 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 SLC13A4Q9UKG4 626 aa9.29□□□□□ -0.92
VPS39-205ENST00000562258 GLYATL1P3A0A0U1RQE8 302 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 GSAPA4D1B5 854 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 TRIM24O15164 1050 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 CATP04040 527 aaKnown RBP9.28□□□□□ -0.92
VPS39-205ENST00000562258 HLA-DQB2P05538 268 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 SLC35G4P0C7Q5 338 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 SERPINB8P50452 374 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 IL2P60568 153 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 SLC20A2Q08357 652 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 GALNTL6Q49A17 601 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 ANKRD22Q5VYY1 191 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 TUBGCP3Q96CW5 907 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 MRPL38Q96DV4 380 aaKnown RBP9.28□□□□□ -0.92
VPS39-205ENST00000562258 SPACA7Q96KW9 195 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 ALG9Q9H6U8 611 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 ZDHHC7Q9NXF8 308 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 BAIAP2L1Q9UHR4 511 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 TMEM59LQ9UK28 342 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 CYP8B1Q9UNU6 501 aa9.28□□□□□ -0.92
VPS39-205ENST00000562258 MEFVO15553 781 aaPredicted RBP9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms