RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 CDKN2BP42772 138 aa13.39□□□□□ -0.27
CLK3-206ENST00000562078 GABRB2P47870 512 aa13.39□□□□□ -0.27
CLK3-206ENST00000562078 PHC1P78364 1004 aa13.39□□□□□ -0.27
CLK3-206ENST00000562078 PCLAFQ15004 111 aa13.39□□□□□ -0.27
CLK3-206ENST00000562078 MAPK11Q15759 364 aa13.39□□□□□ -0.27
CLK3-206ENST00000562078 LRIT3Q3SXY7 679 aa13.39□□□□□ -0.27
CLK3-206ENST00000562078 CEP78Q5JTW2 689 aa13.39□□□□□ -0.27
CLK3-206ENST00000562078 KCNT1Q5JUK3 1230 aa13.39□□□□□ -0.27
CLK3-206ENST00000562078 PRR23BQ6ZRT6 265 aa13.39□□□□□ -0.27
CLK3-206ENST00000562078 C7orf31Q8N865 590 aa13.39□□□□□ -0.27
CLK3-206ENST00000562078 FAM110BQ8TC76 370 aa13.39□□□□□ -0.27
CLK3-206ENST00000562078 PPWD1Q96BP3 646 aaKnown RBP13.39□□□□□ -0.27
CLK3-206ENST00000562078 NXF3Q9H4D5 531 aaKnown RBP13.39□□□□□ -0.27
CLK3-206ENST00000562078 SFMBT1Q9UHJ3 866 aa13.39□□□□□ -0.27
CLK3-206ENST00000562078 IPO11Q9UI26 975 aaKnown RBP13.39□□□□□ -0.27
CLK3-206ENST00000562078 RGSL1A5PLK6 1076 aa13.39□□□□□ -0.27
CLK3-206ENST00000562078 HAS3O00219 553 aa13.39□□□□□ -0.27
CLK3-206ENST00000562078 NUAK1O60285 661 aa13.39□□□□□ -0.27
CLK3-206ENST00000562078 EEF1DP29692 281 aaKnown RBP13.39□□□□□ -0.27
CLK3-206ENST00000562078 GPD2P43304 727 aa13.39□□□□□ -0.27
CLK3-206ENST00000562078 COPZ1P61923 177 aa13.39□□□□□ -0.27
CLK3-206ENST00000562078 FAM102AQ5T9C2 384 aaPredicted RBP13.39□□□□□ -0.27
CLK3-206ENST00000562078 SMYD5Q6GMV2 418 aa13.39□□□□□ -0.27
CLK3-206ENST00000562078 NT5DC4Q86YG4 428 aa13.39□□□□□ -0.27
CLK3-206ENST00000562078 OFCC1Q8IZS5 231 aa13.39□□□□□ -0.27
CLK3-206ENST00000562078 PGAM4Q8N0Y7 254 aa13.39□□□□□ -0.27
CLK3-206ENST00000562078 ESX1Q8N693 406 aa13.39□□□□□ -0.27
CLK3-206ENST00000562078 NATD1Q8N6N6 113 aa13.39□□□□□ -0.27
CLK3-206ENST00000562078 C12orf29Q8N999 325 aa13.39□□□□□ -0.27
CLK3-206ENST00000562078 TP53INP1Q96A56 240 aa13.39□□□□□ -0.27
CLK3-206ENST00000562078 C18orf25Q96B23 403 aaPredicted RBP13.39□□□□□ -0.27
CLK3-206ENST00000562078 FBXL20Q96IG2 436 aa13.39□□□□□ -0.27
CLK3-206ENST00000562078 SLC39A3Q9BRY0 314 aa13.39□□□□□ -0.27
CLK3-206ENST00000562078 RMND5AQ9H871 391 aa13.39□□□□□ -0.27
CLK3-206ENST00000562078 TMEM9Q9P0T7 183 aa13.39□□□□□ -0.27
CLK3-206ENST00000562078 SAC3D1A6NKF1 404 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 CENPBD1B2RD01 187 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 CDK2AP1O14519 115 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 NEMP1O14524 444 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 TOR1BO14657 336 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 KPNA6O60684 536 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 VAPBO95292 243 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 MYF6P23409 242 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 IFNA8P32881 189 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 GMPRP36959 345 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 PRKCQQ04759 706 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 GRSF1Q12849 480 aaKnown RBP eCLIP13.38□□□□□ -0.27
CLK3-206ENST00000562078 STILQ15468 1287 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 UGT3A1Q6NUS8 523 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 NOTUMQ6P988 496 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 EPGNQ6UW88 154 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 CXCL17Q6UXB2 119 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 PLEKHG7Q6ZR37 379 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 SLC22A16Q86VW1 577 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 ZNF781Q8N8C0 355 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 OR13F1Q8NGS4 319 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 ZNF296Q8WUU4 475 aaPredicted RBP13.38□□□□□ -0.27
CLK3-206ENST00000562078 DNAJB3Q8WWF6 145 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 GLT1D1Q96MS3 346 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 CLSTN3Q9BQT9 956 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 NT5C1AQ9BXI3 368 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 RAD21L1Q9H4I0 556 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 WDR55Q9H6Y2 383 aaPredicted RBP13.38□□□□□ -0.27
CLK3-206ENST00000562078 ATP13A3Q9H7F0 1226 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 NEK6Q9HC98 313 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 MOV10Q9HCE1 1003 aaKnown RBP13.38□□□□□ -0.27
CLK3-206ENST00000562078 ADA2Q9NZK5 511 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 PCSK1NQ9UHG2 260 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 TSPAN16Q9UKR8 245 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 TCAF1Q9Y4C2 921 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 ZNF638Q14966 1978 aaKnown RBP13.38□□□□□ -0.27
CLK3-206ENST00000562078 C17orf102A2RUQ5 167 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 MBLAC1A4D2B0 266 aaPredicted RBP13.38□□□□□ -0.27
CLK3-206ENST00000562078 TAF4O00268 1085 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 TIPRLO75663 272 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 RECQL4O94761 1208 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 STAU1O95793 577 aaKnown RBP13.38□□□□□ -0.27
CLK3-206ENST00000562078 GNRH1P01148 92 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 DARSP14868 501 aaKnown RBP13.38□□□□□ -0.27
CLK3-206ENST00000562078 PRKAA2P54646 552 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 ABCE1P61221 599 aaKnown RBP13.38□□□□□ -0.27
CLK3-206ENST00000562078 TUBA1BP68363 451 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 CHRNEQ04844 493 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 ART3Q13508 389 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 DPYSL3Q14195 570 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 PTK2BQ14289 1009 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 ARHGEF6Q15052 776 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 TRMT10BQ6PF06 316 aaKnown RBP13.38□□□□□ -0.27
CLK3-206ENST00000562078 CYP2R1Q6VVX0 501 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 TUBA1AQ71U36 451 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 LRRC49Q8IUZ0 686 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 MINDY2Q8NBR6 621 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 FNIP1Q8TF40 1166 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 ZUFSPQ96AP4 578 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 ADI1Q9BV57 179 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 RETREG1Q9H6L5 497 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 AASDHPPTQ9NRN7 309 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 ZC3H7BQ9UGR2 993 aaKnown RBP13.38□□□□□ -0.27
CLK3-206ENST00000562078 PSME2Q9UL46 239 aa13.38□□□□□ -0.27
CLK3-206ENST00000562078 SMIM35A0A1B0GVV1 85 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms