RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 DSC2Q02487 901 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 ZBTB16Q05516 673 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 BCL2L1Q07817 233 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 ACTN3Q08043 901 aaPredicted RBP7.56□□□□□ -1.2
VPS39-204ENST00000561818 PRKAA1Q13131 559 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 MPP2Q14168 576 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 KRT72Q14CN4 511 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 ACAP2Q15057 778 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 PCSK7Q16549 785 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 TYSND1Q2T9J0 566 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 FASTKD1Q53R41 847 aaKnown RBP7.56□□□□□ -1.2
VPS39-204ENST00000561818 SIRPB2Q5JXA9 342 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 TMEM240Q5SV17 173 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 SYCP2LQ5T4T6 812 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 ARTNQ5T4W7 220 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 UBAP2Q5T6F2 1119 aaKnown RBP7.56□□□□□ -1.2
VPS39-204ENST00000561818 N4BP2L1Q5TBK1 243 aaPredicted RBP7.56□□□□□ -1.2
VPS39-204ENST00000561818 CXorf57Q6NSI4 855 aaKnown RBP7.56□□□□□ -1.2
VPS39-204ENST00000561818 METTL2BQ6P1Q9 378 aaKnown RBP7.56□□□□□ -1.2
VPS39-204ENST00000561818 ZYG11AQ6WRX3 759 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 ARHGAP36Q6ZRI8 547 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 NUDT18Q6ZVK8 323 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 USP45Q70EL2 814 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 EFL1Q7Z2Z2 1120 aaKnown RBP7.56□□□□□ -1.2
VPS39-204ENST00000561818 CLEC14AQ86T13 490 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 TMC8Q8IU68 726 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 CARNMT1Q8N4J0 409 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 NKAPQ8N5F7 415 aaKnown RBP7.56□□□□□ -1.2
VPS39-204ENST00000561818 KDM1BQ8NB78 822 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 ARMC2Q8NEN0 867 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 RHEBL1Q8TAI7 183 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 DTX3LQ8TDB6 740 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 HCAR2Q8TDS4 363 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 HEXDCQ8WVB3 486 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 RMDN1Q96DB5 314 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 ZFRQ96KR1 1074 aaKnown RBP7.56□□□□□ -1.2
VPS39-204ENST00000561818 TMEM237Q96Q45 408 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 LYSMD1Q96S90 227 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 CCT7Q99832 543 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 FEM1AQ9BSK4 669 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 OSBPL1AQ9BXW6 950 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 IL21Q9HBE4 155 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 SMYD2Q9NRG4 433 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 CATSPERZQ9NTU4 200 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 ABCB8Q9NUT2 735 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 NDFIP2Q9NV92 336 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 NLE1Q9NVX2 485 aaPredicted RBP7.56□□□□□ -1.2
VPS39-204ENST00000561818 NDE1Q9NXR1 346 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 TAS2R13Q9NYV9 303 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 MARK1Q9P0L2 795 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 KLHL42Q9P2K6 505 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 HS3ST2Q9Y278 367 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 NR2E3Q9Y5X4 410 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 RGSL1A5PLK6 1076 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 TRPC5OSA6NMA1 111 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 ANKRD66B4E2M5 251 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 GOLGA8RI6L899 631 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 EIF3FO00303 357 aaPredicted RBP7.55□□□□□ -1.2
VPS39-204ENST00000561818 STX7O15400 261 aaKnown RBP7.55□□□□□ -1.2
VPS39-204ENST00000561818 NPHS1O60500 1241 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 UNC5CO95185 931 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 ADH1CP00326 375 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 ESR1P03372 595 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 C2P06681 752 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 MMP2P08253 660 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 LTA4HP09960 611 aaKnown RBP7.55□□□□□ -1.2
VPS39-204ENST00000561818 RALBP11234 206 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 ALOX15P16050 662 aaPredicted RBP7.55□□□□□ -1.2
VPS39-204ENST00000561818 CREB1P16220 341 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 ZNF30P17039 623 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 CALB2P22676 271 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 ATP5F1P24539 256 aaPredicted RBP7.55□□□□□ -1.2
VPS39-204ENST00000561818 NMBRP28336 390 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 SLC6A4P31645 630 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 HMGCLP35914 325 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 ACVRL1P37023 503 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 SLC1A2P43004 574 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 PTGER3P43115 390 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 PGFP49763 221 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 CSRP3P50461 194 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 SCNN1BP51168 640 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 CCR3P51677 355 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 STC1P52823 247 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 LBX1P52954 281 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 RPS24P62847 133 aaKnown RBP7.55□□□□□ -1.2
VPS39-204ENST00000561818 CRADDP78560 199 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 NFKB2Q00653 900 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 OCRLQ01968 901 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 CDC16Q13042 620 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 USP4Q13107 963 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 ITGA9Q13797 1035 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 BMPR2Q13873 1038 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 EIF4HQ15056 248 aaKnown RBP7.55□□□□□ -1.2
VPS39-204ENST00000561818 RAB30Q15771 203 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 CHI3L2Q15782 390 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 CNGA3Q16281 694 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 QPCTQ16769 361 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 GPR33Q49SQ1 333 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 IER5LQ5T953 404 aa7.55□□□□□ -1.2
VPS39-204ENST00000561818 FAM117BQ6P1L5 589 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms