RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 ITGA2BP08514 1039 aa21.39■■□□□ 1.02
CLN3-209ENST00000561689 CISD3P0C7P0 127 aa21.39■■□□□ 1.02
CLN3-209ENST00000561689 LSP1P33241 339 aa21.39■■□□□ 1.02
CLN3-209ENST00000561689 RPA3P35244 121 aaPredicted RBP21.39■■□□□ 1.02
CLN3-209ENST00000561689 ARSDP51689 593 aa21.39■■□□□ 1.02
CLN3-209ENST00000561689 TMPRSS15P98073 1019 aa21.39■■□□□ 1.02
CLN3-209ENST00000561689 SULT2A1Q06520 285 aa21.39■■□□□ 1.02
CLN3-209ENST00000561689 GRIN2CQ14957 1233 aa21.39■■□□□ 1.02
CLN3-209ENST00000561689 DLG2Q15700 870 aa21.39■■□□□ 1.02
CLN3-209ENST00000561689 GRTP1Q5TC63 336 aa21.39■■□□□ 1.02
CLN3-209ENST00000561689 ARMC3Q5W041 872 aa21.39■■□□□ 1.02
CLN3-209ENST00000561689 C22orf39Q6P5X5 142 aa21.39■■□□□ 1.02
CLN3-209ENST00000561689 SH2D5Q6ZV89 423 aa21.39■■□□□ 1.02
CLN3-209ENST00000561689 DENND6AQ8IWF6 608 aa21.39■■□□□ 1.02
CLN3-209ENST00000561689 ATXN2LQ8WWM7 1075 aaKnown RBP21.39■■□□□ 1.02
CLN3-209ENST00000561689 PLA2G2FQ9BZM2 168 aa21.39■■□□□ 1.02
CLN3-209ENST00000561689 TTYH1Q9H313 450 aaPredicted RBP21.39■■□□□ 1.02
CLN3-209ENST00000561689 OBP2AQ9NY56 170 aa21.39■■□□□ 1.02
CLN3-209ENST00000561689 NKIRAS1Q9NYS0 192 aa21.39■■□□□ 1.02
CLN3-209ENST00000561689 MIA3Q5JRA6 1907 aa21.39■■□□□ 1.02
CLN3-209ENST00000561689 SPTBN5Q9NRC6 3674 aaKnown RBP21.39■■□□□ 1.02
CLN3-209ENST00000561689 CXorf51AA0A1B0GTR3 108 aa21.39■■□□□ 1.01
CLN3-209ENST00000561689 FZD6O60353 706 aa21.39■■□□□ 1.01
CLN3-209ENST00000561689 TULP3O75386 442 aa21.39■■□□□ 1.01
CLN3-209ENST00000561689 SLC4A1P02730 911 aa21.39■■□□□ 1.01
CLN3-209ENST00000561689 CA4P22748 312 aa21.39■■□□□ 1.01
CLN3-209ENST00000561689 CNTFP26441 200 aa21.39■■□□□ 1.01
CLN3-209ENST00000561689 ABL2P42684 1182 aa21.39■■□□□ 1.01
CLN3-209ENST00000561689 CSNK1DP48730 415 aa21.39■■□□□ 1.01
CLN3-209ENST00000561689 CTBP1Q13363 440 aa21.39■■□□□ 1.01
CLN3-209ENST00000561689 THOC5Q13769 683 aaKnown RBP21.39■■□□□ 1.01
CLN3-209ENST00000561689 GRM2Q14416 872 aa21.39■■□□□ 1.01
CLN3-209ENST00000561689 QPCTQ16769 361 aa21.39■■□□□ 1.01
CLN3-209ENST00000561689 NLRP9Q7RTR0 991 aa21.39■■□□□ 1.01
CLN3-209ENST00000561689 BANPQ8N9N5 519 aa21.39■■□□□ 1.01
CLN3-209ENST00000561689 TTC8Q8TAM2 541 aa21.39■■□□□ 1.01
CLN3-209ENST00000561689 CIPCQ9C0C6 399 aa21.39■■□□□ 1.01
CLN3-209ENST00000561689 ECT2Q9H8V3 914 aa21.39■■□□□ 1.01
CLN3-209ENST00000561689 LMCD1Q9NZU5 365 aa21.39■■□□□ 1.01
CLN3-209ENST00000561689 HECAQ9UBI9 543 aaPredicted RBP21.39■■□□□ 1.01
CLN3-209ENST00000561689 SMG5Q9UPR3 1016 aaKnown RBP21.39■■□□□ 1.01
CLN3-209ENST00000561689 MTCH2Q9Y6C9 303 aa21.39■■□□□ 1.01
CLN3-209ENST00000561689 EYSQ5T1H1 3165 aa21.39■■□□□ 1.01
CLN3-209ENST00000561689 MYLKQ15746 1914 aa21.38■■□□□ 1.01
CLN3-209ENST00000561689 SLC6A11P48066 632 aa21.38■■□□□ 1.01
CLN3-209ENST00000561689 EPHB1P54762 984 aa21.38■■□□□ 1.01
CLN3-209ENST00000561689 SNRPD1P62314 119 aaKnown RBP21.38■■□□□ 1.01
CLN3-209ENST00000561689 BCL2L1Q07817 233 aa21.38■■□□□ 1.01
CLN3-209ENST00000561689 MESP2Q0VG99 397 aa21.38■■□□□ 1.01
CLN3-209ENST00000561689 CTC1Q2NKJ3 1217 aa21.38■■□□□ 1.01
CLN3-209ENST00000561689 ARMC12Q5T9G4 340 aa21.38■■□□□ 1.01
CLN3-209ENST00000561689 MDGA1Q8NFP4 955 aa21.38■■□□□ 1.01
CLN3-209ENST00000561689 OR13C4Q8NGS5 318 aa21.38■■□□□ 1.01
CLN3-209ENST00000561689 PTPRN2Q92932 1015 aa21.38■■□□□ 1.01
CLN3-209ENST00000561689 HDAC10Q969S8 669 aa21.38■■□□□ 1.01
CLN3-209ENST00000561689 ISG20Q96AZ6 181 aaKnown RBP21.38■■□□□ 1.01
CLN3-209ENST00000561689 MYO19Q96H55 970 aa21.38■■□□□ 1.01
CLN3-209ENST00000561689 DNAJC1Q96KC8 554 aaKnown RBP21.38■■□□□ 1.01
CLN3-209ENST00000561689 RBBP8Q99708 897 aa21.38■■□□□ 1.01
CLN3-209ENST00000561689 KXD1Q9BQD3 176 aa21.38■■□□□ 1.01
CLN3-209ENST00000561689 RABEP2Q9H5N1 569 aa21.38■■□□□ 1.01
CLN3-209ENST00000561689 HPS4Q9NQG7 708 aa21.38■■□□□ 1.01
CLN3-209ENST00000561689 ERVW-1Q9UQF0 538 aa21.38■■□□□ 1.01
CLN3-209ENST00000561689 A0A0U1RQS6 177 aa21.37■■□□□ 1.01
CLN3-209ENST00000561689 A6NNZ2 444 aa21.37■■□□□ 1.01
CLN3-209ENST00000561689 PGLSO95336 258 aa21.37■■□□□ 1.01
CLN3-209ENST00000561689 MYLK3Q32MK0 819 aa21.37■■□□□ 1.01
CLN3-209ENST00000561689 TUBB8Q3ZCM7 444 aa21.37■■□□□ 1.01
CLN3-209ENST00000561689 ZNF470Q6ECI4 717 aa21.37■■□□□ 1.01
CLN3-209ENST00000561689 NEPROQ6NW34 567 aa21.37■■□□□ 1.01
CLN3-209ENST00000561689 GLT6D1Q7Z4J2 308 aa21.37■■□□□ 1.01
CLN3-209ENST00000561689 CNTN4Q8IWV2 1026 aa21.37■■□□□ 1.01
CLN3-209ENST00000561689 ETFBKMTQ8IXQ9 262 aa21.37■■□□□ 1.01
CLN3-209ENST00000561689 OR6P1Q8NGX9 317 aa21.37■■□□□ 1.01
CLN3-209ENST00000561689 C12orf65Q9H3J6 166 aaKnown RBP21.37■■□□□ 1.01
CLN3-209ENST00000561689 ATP13A3Q9H7F0 1226 aa21.37■■□□□ 1.01
CLN3-209ENST00000561689 SUDS3Q9H7L9 328 aaPredicted RBP21.37■■□□□ 1.01
CLN3-209ENST00000561689 SSU72Q9NP77 194 aaKnown RBP21.37■■□□□ 1.01
CLN3-209ENST00000561689 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP21.37■■□□□ 1.01
CLN3-209ENST00000561689 TRAFD1O14545 582 aaPredicted RBP21.37■■□□□ 1.01
CLN3-209ENST00000561689 ALDOAP04075 364 aaKnown RBP21.37■■□□□ 1.01
CLN3-209ENST00000561689 CTPS1P17812 591 aa21.37■■□□□ 1.01
CLN3-209ENST00000561689 SPRP35270 261 aaPredicted RBP21.37■■□□□ 1.01
CLN3-209ENST00000561689 LTBRP36941 435 aa21.37■■□□□ 1.01
CLN3-209ENST00000561689 SLC1A2P43004 574 aa21.37■■□□□ 1.01
CLN3-209ENST00000561689 MAPK8P45983 427 aa21.37■■□□□ 1.01
CLN3-209ENST00000561689 PRAMEP78395 509 aa21.37■■□□□ 1.01
CLN3-209ENST00000561689 MPP1Q00013 466 aa21.37■■□□□ 1.01
CLN3-209ENST00000561689 PDE1BQ01064 536 aa21.37■■□□□ 1.01
CLN3-209ENST00000561689 SLC18A2Q05940 514 aa21.37■■□□□ 1.01
CLN3-209ENST00000561689 LAMB3Q13751 1172 aa21.37■■□□□ 1.01
CLN3-209ENST00000561689 ADGRE1Q14246 886 aa21.37■■□□□ 1.01
CLN3-209ENST00000561689 PDGFRLQ15198 375 aa21.37■■□□□ 1.01
CLN3-209ENST00000561689 GAB4Q2WGN9 574 aa21.37■■□□□ 1.01
CLN3-209ENST00000561689 DPY19L3Q6ZPD9 716 aa21.37■■□□□ 1.01
CLN3-209ENST00000561689 Q6ZVU0 165 aa21.37■■□□□ 1.01
CLN3-209ENST00000561689 PTAR1Q7Z6K3 402 aaPredicted RBP21.37■■□□□ 1.01
CLN3-209ENST00000561689 TAX1BP1Q86VP1 789 aa21.37■■□□□ 1.01
CLN3-209ENST00000561689 PAF1Q8N7H5 531 aa21.37■■□□□ 1.01
CLN3-209ENST00000561689 GDAP1Q8TB36 358 aa21.37■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms