RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	STRN3	Q13033	797 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	SPP2	Q13103	211 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	CALCOCO2	Q13137	446 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	BMPR2	Q13873	1038 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	ABCB5	Q2M3G0	1257 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	PARP6	Q2NL67	630 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	USH1G	Q495M9	461 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	CERKL	Q49MI3	558 aa	Predicted RBP	2.57	□□□□□ -2
SPG11-223	ENST00000560858	CEP55	Q53EZ4	464 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	ODF2	Q5BJF6	829 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	DACT2	Q5SW24	774 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	ODR4	Q5SWX8	454 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	TMEM63B	Q5T3F8	832 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	HIBCH	Q6NVY1	386 aa	Predicted RBP	2.57	□□□□□ -2
SPG11-223	ENST00000560858	AADACL2	Q6P093	401 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	MIS18BP1	Q6P0N0	1132 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	SLC39A4	Q6P5W5	647 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	C15orf39	Q6ZRI6	1047 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	MON1B	Q7L1V2	547 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	ENOSF1	Q7L5Y1	443 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	SPATA21	Q7Z572	469 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	FAM160B2	Q86V87	743 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	EXOC3L1	Q86VI1	746 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	ZNF677	Q86XU0	584 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	TDRP	Q86YL5	185 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	ADGRG5	Q8IZF4	528 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	MYCT1	Q8N699	235 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	SAMD3	Q8N6K7	520 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	XXYLT1	Q8NBI6	393 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	BBOF1	Q8ND07	529 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	SMC1B	Q8NDV3	1235 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	CYP2W1	Q8TAV3	490 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	PIGO	Q8TEQ8	1089 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	AGAP11	Q8TF27	550 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	GRK7	Q8WTQ7	553 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	C10orf82	Q8WW14	230 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	N4BP2L2	Q92802	583 aa	Predicted RBP	2.57	□□□□□ -2
SPG11-223	ENST00000560858	ARHGEF2	Q92974	986 aa	Known RBP	2.57	□□□□□ -2
SPG11-223	ENST00000560858	KAT5	Q92993	513 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	RFK	Q969G6	155 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	GRAMD1A	Q96CP6	724 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	STAMBPL1	Q96FJ0	436 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	FAXDC2	Q96IV6	333 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	IFT74	Q96LB3	600 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	FAM81B	Q96LP2	452 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	RMDN2	Q96LZ7	410 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	MAGEB18	Q96M61	343 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	ZNF570	Q96NI8	536 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	ACCS	Q96QU6	501 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	CAMKK2	Q96RR4	588 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	IWS1	Q96ST2	819 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	PRMT1	Q99873	361 aa	Known RBP	2.57	□□□□□ -2
SPG11-223	ENST00000560858	CBWD1	Q9BRT8	395 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	HERPUD2	Q9BSE4	406 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	DDX23	Q9BUQ8	820 aa	Known RBP	2.57	□□□□□ -2
SPG11-223	ENST00000560858	NUP85	Q9BW27	656 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	TEKT3	Q9BXF9	490 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	TRIM31	Q9BZY9	425 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	DCLK3	Q9C098	648 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	TMEM117	Q9H0C3	514 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	LRMDA	Q9H2I8	198 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	LDAH	Q9H6V9	325 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	TLE6	Q9H808	572 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	TMEM206	Q9H813	350 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	PPCS	Q9HAB8	311 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	2.57	□□□□□ -2
SPG11-223	ENST00000560858	VEZT	Q9HBM0	779 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	TMEM8A	Q9HCN3	771 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	UBN1	Q9NPG3	1134 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	BATF3	Q9NR55	127 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	ARHGEF3	Q9NR81	526 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	FGFR1OP2	Q9NVK5	253 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	NINJ2	Q9NZG7	142 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	BCCIP	Q9P287	314 aa	Known RBP eCLIP	2.57	□□□□□ -2
SPG11-223	ENST00000560858	LARS	Q9P2J5	1176 aa	Known RBP	2.57	□□□□□ -2
SPG11-223	ENST00000560858	PI4KB	Q9UBF8	816 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	CTNNAL1	Q9UBT7	734 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	FETUB	Q9UGM5	382 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	HERC5	Q9UII4	1024 aa	Known RBP	2.57	□□□□□ -2
SPG11-223	ENST00000560858	MTUS1	Q9ULD2	1270 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	RPL26L1	Q9UNX3	145 aa	Known RBP	2.57	□□□□□ -2
SPG11-223	ENST00000560858	ARL2BP	Q9Y2Y0	163 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	TMX2	Q9Y320	296 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	MRPL11	Q9Y3B7	192 aa	Known RBP	2.57	□□□□□ -2
SPG11-223	ENST00000560858	CEP83	Q9Y592	693 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	UBIAD1	Q9Y5Z9	338 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	ZNF638	Q14966	1978 aa	Known RBP	2.57	□□□□□ -2
SPG11-223	ENST00000560858	TRIP11	Q15643	1979 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	ASTN2	O75129	1339 aa	Predicted RBP	2.57	□□□□□ -2
SPG11-223	ENST00000560858	ADGRA2	Q96PE1	1338 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	CNTNAP1	P78357	1384 aa		2.57	□□□□□ -2
SPG11-223	ENST00000560858	DICER1	Q9UPY3	1922 aa	Known RBP	2.56	□□□□□ -2
SPG11-223	ENST00000560858	LOC102724159	A0A0B4J2E5	919 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	TCRBV5S1A1T	A0A578	114 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	TLDC2	A0PJX2	215 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	EME2	A4GXA9	379 aa	Predicted RBP	2.56	□□□□□ -2
SPG11-223	ENST00000560858	FAM90A8P	A6NJQ4	464 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	CD8B2	A6NJW9	211 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	SMIM23	A6NLE4	172 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	TMEM110-MUSTN1	A8MSY1	372 aa		2.56	□□□□□ -2

Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms