RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 FGF1P05230 155 aa10.14□□□□□ -0.79
USP3-216ENST00000559873 HLA-DPA1P20036 260 aa10.14□□□□□ -0.79
USP3-216ENST00000559873 ACSL1P33121 698 aa10.14□□□□□ -0.79
USP3-216ENST00000559873 CD68P34810 354 aaPredicted RBP10.14□□□□□ -0.79
USP3-216ENST00000559873 NBL1P41271 181 aa10.14□□□□□ -0.79
USP3-216ENST00000559873 ABL2P42684 1182 aa10.14□□□□□ -0.79
USP3-216ENST00000559873 DHPSP49366 369 aaPredicted RBP10.14□□□□□ -0.79
USP3-216ENST00000559873 CCR5P51681 352 aa10.14□□□□□ -0.79
USP3-216ENST00000559873 METAP1P53582 386 aa10.14□□□□□ -0.79
USP3-216ENST00000559873 RPS21P63220 83 aaKnown RBP10.14□□□□□ -0.79
USP3-216ENST00000559873 FAM193AP78312 1265 aa10.14□□□□□ -0.79
USP3-216ENST00000559873 ARHGEF7Q14155 803 aa10.14□□□□□ -0.79
USP3-216ENST00000559873 PPP1R7Q15435 360 aa10.14□□□□□ -0.79
USP3-216ENST00000559873 PCSK7Q16549 785 aa10.14□□□□□ -0.79
USP3-216ENST00000559873 WHAMMP3Q1A5X7 153 aa10.14□□□□□ -0.79
USP3-216ENST00000559873 PLK5Q496M5 336 aa10.14□□□□□ -0.79
USP3-216ENST00000559873 LYSMD4Q5XG99 296 aa10.14□□□□□ -0.79
USP3-216ENST00000559873 KIAA0895LQ68EN5 471 aa10.14□□□□□ -0.79
USP3-216ENST00000559873 NAPEPLDQ6IQ20 393 aa10.14□□□□□ -0.79
USP3-216ENST00000559873 RABEPKQ7Z6M1 372 aa10.14□□□□□ -0.79
USP3-216ENST00000559873 PRPF39Q86UA1 669 aaKnown RBP10.14□□□□□ -0.79
USP3-216ENST00000559873 TRIM69Q86WT6 500 aa10.14□□□□□ -0.79
USP3-216ENST00000559873 HORMAD1Q86X24 394 aa10.14□□□□□ -0.79
USP3-216ENST00000559873 FAM160A2Q8N612 972 aaPredicted RBP10.14□□□□□ -0.79
USP3-216ENST00000559873 MNS1Q8NEH6 495 aa10.14□□□□□ -0.79
USP3-216ENST00000559873 SNX19Q92543 992 aa10.14□□□□□ -0.79
USP3-216ENST00000559873 LOXL4Q96JB6 756 aa10.14□□□□□ -0.79
USP3-216ENST00000559873 ZC3H10Q96K80 434 aaKnown RBP10.14□□□□□ -0.79
USP3-216ENST00000559873 DUSP15Q9H1R2 295 aaPredicted RBP10.14□□□□□ -0.79
USP3-216ENST00000559873 LRRC40Q9H9A6 602 aa10.14□□□□□ -0.79
USP3-216ENST00000559873 PCDH12Q9NPG4 1184 aa10.14□□□□□ -0.79
USP3-216ENST00000559873 SMARCAL1Q9NZC9 954 aa10.14□□□□□ -0.79
USP3-216ENST00000559873 SUSD2Q9UGT4 822 aa10.14□□□□□ -0.79
USP3-216ENST00000559873 MBD1Q9UIS9 605 aaPredicted RBP10.14□□□□□ -0.79
USP3-216ENST00000559873 CDC23Q9UJX2 597 aa10.14□□□□□ -0.79
USP3-216ENST00000559873 SMG5Q9UPR3 1016 aaKnown RBP10.14□□□□□ -0.79
USP3-216ENST00000559873 FADS3Q9Y5Q0 445 aa10.14□□□□□ -0.79
USP3-216ENST00000559873 R4GN57 208 aa10.14□□□□□ -0.79
USP3-216ENST00000559873 A0A0J9YYE9 177 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 A0A1W2PQU0 124 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 PRR23AA6NEV1 266 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 CAPN8A6NHC0 703 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 F5H423 210 aaPredicted RBP10.13□□□□□ -0.79
USP3-216ENST00000559873 PSMD11O00231 422 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 PLK4O00444 970 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 RIOK3O14730 519 aaKnown RBP10.13□□□□□ -0.79
USP3-216ENST00000559873 NDC80O14777 642 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 AREL1O15033 823 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 HRO43593 1189 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 FZD6O60353 706 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 RNGTTO60942 597 aaKnown RBP10.13□□□□□ -0.79
USP3-216ENST00000559873 FSBPO95073 299 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 MT-CYBP00156 380 aaPredicted RBP10.13□□□□□ -0.79
USP3-216ENST00000559873 TRBC1P01850 177 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 KRT14P02533 472 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 MMP2P08253 660 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 ELFN1P0C7U0 828 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 GNSP15586 552 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 TIMP2P16035 220 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 ZNF30P17039 623 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 BCKDHBP21953 392 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 VIPR1P32241 457 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 HOXD12P35452 270 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 MMP12P39900 470 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 WNT3AP56704 352 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 SRSF5Q13243 272 aaKnown RBP10.13□□□□□ -0.79
USP3-216ENST00000559873 DHX34Q14147 1143 aaKnown RBP10.13□□□□□ -0.79
USP3-216ENST00000559873 LAIR1Q6GTX8 287 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 KDELC1Q6UW63 502 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 SYDE1Q6ZW31 735 aaPredicted RBP10.13□□□□□ -0.79
USP3-216ENST00000559873 DPPA4Q7L190 304 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 CYP2U1Q7Z449 544 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 LINC00523Q86TU6 105 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 SPATA22Q8NHS9 363 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 VOPP1Q96AW1 172 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 TADA1Q96BN2 335 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 SCRN2Q96FV2 425 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 OXNAD1Q96HP4 312 aaPredicted RBP10.13□□□□□ -0.79
USP3-216ENST00000559873 HSPA12BQ96MM6 686 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 MCCC1Q96RQ3 725 aaPredicted RBP10.13□□□□□ -0.79
USP3-216ENST00000559873 DDX47Q9H0S4 455 aaKnown RBP10.13□□□□□ -0.79
USP3-216ENST00000559873 C6orf106Q9H6K1 298 aaPredicted RBP10.13□□□□□ -0.79
USP3-216ENST00000559873 RAB6BQ9NRW1 208 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 KCTD5Q9NXV2 234 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 HACD3Q9P035 362 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 B4GALT6Q9UBX8 382 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 GMEB2Q9UKD1 530 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 DMTF1Q9Y222 760 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 CHKBQ9Y259 395 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 INVSQ9Y283 1065 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 SPAG17Q6Q759 2223 aa10.13□□□□□ -0.79
USP3-216ENST00000559873 ANKRD36A6QL64 1941 aa10.12□□□□□ -0.79
USP3-216ENST00000559873 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.12□□□□□ -0.79
USP3-216ENST00000559873 METTL12A8MUP2 240 aa10.12□□□□□ -0.79
USP3-216ENST00000559873 ANKRD66B4E2M5 251 aa10.12□□□□□ -0.79
USP3-216ENST00000559873 AP3B1O00203 1094 aa10.12□□□□□ -0.79
USP3-216ENST00000559873 LZTS3O60299 673 aaPredicted RBP10.12□□□□□ -0.79
USP3-216ENST00000559873 TM7SF2O76062 418 aa10.12□□□□□ -0.79
USP3-216ENST00000559873 METTL18O95568 372 aa10.12□□□□□ -0.79
USP3-216ENST00000559873 AP2A1O95782 977 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms