RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 AOC1P19801 751 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 CPOXP36551 454 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 RPL14P50914 215 aaKnown RBP10.68□□□□□ -0.7
CUX1-217ENST00000558836 SEMA3AQ14563 771 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 TAF12Q16514 161 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 DBN1Q16643 649 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 FBXO48Q5FWF7 155 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 GPR158Q5T848 1215 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 TEX26Q8N6G2 289 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 NAT14Q8WUY8 206 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 SREK1Q8WXA9 508 aaKnown RBP10.68□□□□□ -0.7
CUX1-217ENST00000558836 SPATA17Q96L03 361 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 PRICKLE1Q96MT3 831 aaPredicted RBP10.68□□□□□ -0.7
CUX1-217ENST00000558836 LENG8Q96PV6 779 aaPredicted RBP10.68□□□□□ -0.7
CUX1-217ENST00000558836 PANX3Q96QZ0 392 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 CLSTN3Q9BQT9 956 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 DRC3Q9H069 523 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 RNF208Q9H0X6 261 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 POMKQ9H5K3 350 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 ARNT2Q9HBZ2 717 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 TNFRSF12AQ9NP84 129 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.68□□□□□ -0.73e-6■■□□□ 12.2
CUX1-217ENST00000558836 DNMT3LQ9UJW3 386 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 PCDHGC4Q9Y5F7 938 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 H7C4K7 107 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 PRAMEF11O60813 436 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 PDHA1P08559 390 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 ZDHHC11BP0C7U3 371 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 COL6A1P12109 1028 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 CORO1AP31146 461 aaKnown RBP10.68□□□□□ -0.7
CUX1-217ENST00000558836 GNA12Q03113 381 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 CDK18Q07002 472 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 CUL3Q13618 768 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 LSM12Q3MHD2 195 aaKnown RBP10.68□□□□□ -0.7
CUX1-217ENST00000558836 HECTD2Q5U5R9 776 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 FAM91A1Q658Y4 838 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 RIPOR1Q6ZS17 1223 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 TRIM67Q6ZTA4 783 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 N4BP2L2Q92802 583 aaPredicted RBP10.68□□□□□ -0.7
CUX1-217ENST00000558836 RMDN1Q96DB5 314 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 FAM167BQ9BTA0 163 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 PRKD2Q9BZL6 878 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 ALG9Q9H6U8 611 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 VPS45Q9NRW7 570 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 IGSF5Q9NSI5 407 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 GTSE1Q9NYZ3 720 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 ANKRD6Q9Y2G4 727 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 MROH6A6NGR9 719 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 MATN2O00339 956 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 GRID2O43424 1007 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 GOT2P00505 430 aaKnown RBP10.68□□□□□ -0.7
CUX1-217ENST00000558836 HOXD9P28356 352 aaPredicted RBP10.68□□□□□ -0.7
CUX1-217ENST00000558836 CA8P35219 290 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 HADHAP40939 763 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 COPAP53621 1224 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 USP41Q3LFD5 358 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 PARP15Q460N3 678 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 SH2D4BQ5SQS7 431 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 C1orf146Q5VVC0 180 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 SEL1L3Q68CR1 1132 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 SNX31Q8N9S9 440 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 PTCD2Q8WV60 388 aaKnown RBP10.68□□□□□ -0.7
CUX1-217ENST00000558836 NRG4Q8WWG1 115 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 STMN2Q93045 179 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 CATSPER2Q96P56 530 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 SLC22A12Q96S37 553 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 ZBED2Q9BTP6 218 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 MRPL46Q9H2W6 279 aaKnown RBP10.68□□□□□ -0.7
CUX1-217ENST00000558836 DCLRE1BQ9H816 532 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 TRPC7Q9HCX4 862 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 VWA7Q9Y334 891 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 SZT2Q5T011 3432 aa10.67□□□□□ -0.7
CUX1-217ENST00000558836 A0A088AWK7 358 aa10.67□□□□□ -0.7
CUX1-217ENST00000558836 LOC285095A0A1B0GVY8 99 aa10.67□□□□□ -0.7
CUX1-217ENST00000558836 CCDC162PA2VCL2 907 aa10.67□□□□□ -0.7
CUX1-217ENST00000558836 AIM2O14862 343 aa10.67□□□□□ -0.7
CUX1-217ENST00000558836 FKTNO75072 461 aa10.67□□□□□ -0.7
CUX1-217ENST00000558836 TM7SF2O76062 418 aa10.67□□□□□ -0.7
CUX1-217ENST00000558836 PSMG1O95456 288 aa10.67□□□□□ -0.7
CUX1-217ENST00000558836 S1PR4O95977 384 aa10.67□□□□□ -0.7
CUX1-217ENST00000558836 HMGA1P17096 107 aaKnown RBP10.67□□□□□ -0.7
CUX1-217ENST00000558836 CRABP2P29373 138 aa10.67□□□□□ -0.7
CUX1-217ENST00000558836 MSX2P35548 267 aaPredicted RBP10.67□□□□□ -0.7
CUX1-217ENST00000558836 MAP2K2P36507 400 aa10.67□□□□□ -0.7
CUX1-217ENST00000558836 LEPRP48357 1165 aaKnown RBP10.67□□□□□ -0.7
CUX1-217ENST00000558836 CDKN1CP49918 316 aaPredicted RBP10.67□□□□□ -0.7
CUX1-217ENST00000558836 TCHHL1Q5QJ38 904 aaPredicted RBP10.67□□□□□ -0.7
CUX1-217ENST00000558836 HECTD3Q5T447 861 aa10.67□□□□□ -0.7
CUX1-217ENST00000558836 TMCO4Q5TGY1 634 aa10.67□□□□□ -0.7
CUX1-217ENST00000558836 DEFB107AQ8IZN7 70 aa10.67□□□□□ -0.7
CUX1-217ENST00000558836 LRRC43Q8N309 656 aa10.67□□□□□ -0.7
CUX1-217ENST00000558836 TTC1Q99614 292 aa10.67□□□□□ -0.7
CUX1-217ENST00000558836 MRM3Q9HC36 420 aaKnown RBP10.67□□□□□ -0.7
CUX1-217ENST00000558836 RAP2CQ9Y3L5 183 aa10.67□□□□□ -0.7
CUX1-217ENST00000558836 SPO11Q9Y5K1 396 aa10.67□□□□□ -0.7
CUX1-217ENST00000558836 TMEM114B3SHH9 223 aa10.67□□□□□ -0.7
CUX1-217ENST00000558836 GPR39O43194 453 aa10.67□□□□□ -0.7
CUX1-217ENST00000558836 SNAP91O60641 907 aa10.67□□□□□ -0.7
CUX1-217ENST00000558836 ALOX15P16050 662 aaPredicted RBP10.67□□□□□ -0.7
CUX1-217ENST00000558836 HDCP19113 662 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms