RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 MLNP12872 115 aa11.4□□□□□ -0.58
LDLR-208ENST00000558518 GSSP48637 474 aa11.4□□□□□ -0.58
LDLR-208ENST00000558518 IST1P53990 364 aa11.4□□□□□ -0.58
LDLR-208ENST00000558518 FKBP1AP62942 108 aaKnown RBP11.4□□□□□ -0.58
LDLR-208ENST00000558518 GPR158Q5T848 1215 aa11.4□□□□□ -0.58
LDLR-208ENST00000558518 PDZD4Q76G19 769 aaPredicted RBP11.4□□□□□ -0.58
LDLR-208ENST00000558518 CNTD1Q8N815 330 aa11.4□□□□□ -0.58
LDLR-208ENST00000558518 EIF2AQ9BY44 585 aaKnown RBP11.4□□□□□ -0.58
LDLR-208ENST00000558518 MIR1-1HGQ9H1L0 117 aa11.4□□□□□ -0.58
LDLR-208ENST00000558518 NXF3Q9H4D5 531 aaKnown RBP11.4□□□□□ -0.58
LDLR-208ENST00000558518 UTP6Q9NYH9 597 aaKnown RBP11.4□□□□□ -0.58
LDLR-208ENST00000558518 STAP1Q9ULZ2 295 aa11.4□□□□□ -0.58
LDLR-208ENST00000558518 RBBP6Q7Z6E9 1792 aaKnown RBP11.4□□□□□ -0.58
LDLR-208ENST00000558518 KPNA6O60684 536 aa11.4□□□□□ -0.59
LDLR-208ENST00000558518 RSL1D1O76021 490 aaKnown RBP11.4□□□□□ -0.59
LDLR-208ENST00000558518 TKTP29401 623 aaKnown RBP11.4□□□□□ -0.59
LDLR-208ENST00000558518 SLC7A1P30825 629 aa11.4□□□□□ -0.59
LDLR-208ENST00000558518 PFKFB4Q16877 469 aa11.4□□□□□ -0.59
LDLR-208ENST00000558518 RGS21Q2M5E4 152 aa11.4□□□□□ -0.59
LDLR-208ENST00000558518 ZBED5Q49AG3 693 aa11.4□□□□□ -0.59
LDLR-208ENST00000558518 BTLAQ7Z6A9 289 aa11.4□□□□□ -0.59
LDLR-208ENST00000558518 CARM1Q86X55 608 aa11.4□□□□□ -0.59
LDLR-208ENST00000558518 PCYOX1LQ8NBM8 494 aa11.4□□□□□ -0.59
LDLR-208ENST00000558518 TRPC4APQ8TEL6 797 aa11.4□□□□□ -0.59
LDLR-208ENST00000558518 BORCS5Q969J3 196 aa11.4□□□□□ -0.59
LDLR-208ENST00000558518 ZNF597Q96LX8 424 aa11.4□□□□□ -0.59
LDLR-208ENST00000558518 OSMRQ99650 979 aa11.4□□□□□ -0.59
LDLR-208ENST00000558518 HERC2P3Q9BVR0 1158 aa11.4□□□□□ -0.59
LDLR-208ENST00000558518 RHOBTB2Q9BYZ6 727 aa11.4□□□□□ -0.59
LDLR-208ENST00000558518 ULBP1Q9BZM6 244 aa11.4□□□□□ -0.59
LDLR-208ENST00000558518 OSBPL2Q9H1P3 480 aa11.4□□□□□ -0.59
LDLR-208ENST00000558518 FZD8Q9H461 694 aa11.4□□□□□ -0.59
LDLR-208ENST00000558518 RHOJQ9H4E5 214 aa11.4□□□□□ -0.59
LDLR-208ENST00000558518 RPF2Q9H7B2 306 aaKnown RBP11.4□□□□□ -0.59
LDLR-208ENST00000558518 SEMA4BQ9NPR2 832 aaPredicted RBP11.4□□□□□ -0.59
LDLR-208ENST00000558518 SLC38A7Q9NVC3 462 aa11.4□□□□□ -0.59
LDLR-208ENST00000558518 AASSQ9UDR5 926 aa11.4□□□□□ -0.59
LDLR-208ENST00000558518 PNMA8BQ9ULN7 279 aaPredicted RBP11.4□□□□□ -0.59
LDLR-208ENST00000558518 FZD10Q9ULW2 581 aa11.4□□□□□ -0.59
LDLR-208ENST00000558518 SLC27A5Q9Y2P5 690 aa11.4□□□□□ -0.59
LDLR-208ENST00000558518 TRAF6Q9Y4K3 522 aa11.4□□□□□ -0.59
LDLR-208ENST00000558518 RAD54BQ9Y620 910 aa11.4□□□□□ -0.59
LDLR-208ENST00000558518 SCN1AP35498 2009 aa11.39□□□□□ -0.59
LDLR-208ENST00000558518 NOBOXO60393 691 aa11.39□□□□□ -0.59
LDLR-208ENST00000558518 GMNNO75496 209 aa11.39□□□□□ -0.59
LDLR-208ENST00000558518 MATKP42679 507 aa11.39□□□□□ -0.59
LDLR-208ENST00000558518 NKX2-5P52952 324 aaPredicted RBP11.39□□□□□ -0.59
LDLR-208ENST00000558518 CDH17Q12864 832 aa11.39□□□□□ -0.59
LDLR-208ENST00000558518 DPYSQ14117 519 aa11.39□□□□□ -0.59
LDLR-208ENST00000558518 MAPRE2Q15555 327 aa11.39□□□□□ -0.59
LDLR-208ENST00000558518 CROCCP3Q8IVE0 287 aa11.39□□□□□ -0.59
LDLR-208ENST00000558518 CMTR2Q8IYT2 770 aaKnown RBP11.39□□□□□ -0.59
LDLR-208ENST00000558518 MIER2Q8N344 545 aa11.39□□□□□ -0.59
LDLR-208ENST00000558518 SDCCAG3Q96C92 435 aa11.39□□□□□ -0.59
LDLR-208ENST00000558518 PABPC5Q96DU9 382 aaKnown RBP11.39□□□□□ -0.59
LDLR-208ENST00000558518 C3orf30Q96M34 536 aa11.39□□□□□ -0.59
LDLR-208ENST00000558518 GPR20Q99678 358 aa11.39□□□□□ -0.59
LDLR-208ENST00000558518 SLC25A23Q9BV35 468 aa11.39□□□□□ -0.59
LDLR-208ENST00000558518 ESRRBO95718 433 aa11.39□□□□□ -0.59
LDLR-208ENST00000558518 CCNA2P20248 432 aa11.39□□□□□ -0.59
LDLR-208ENST00000558518 IGFBP6P24592 240 aaPredicted RBP11.39□□□□□ -0.59
LDLR-208ENST00000558518 CD68P34810 354 aaPredicted RBP11.39□□□□□ -0.59
LDLR-208ENST00000558518 TNFAIP2Q03169 654 aa11.39□□□□□ -0.59
LDLR-208ENST00000558518 DMPKQ09013 629 aa11.39□□□□□ -0.59
LDLR-208ENST00000558518 LAPTM5Q13571 262 aa11.39□□□□□ -0.59
LDLR-208ENST00000558518 PTPRCAPQ14761 206 aa11.39□□□□□ -0.59
LDLR-208ENST00000558518 CCDC92Q53HC0 331 aaPredicted RBP11.39□□□□□ -0.59
LDLR-208ENST00000558518 TMEM110Q86TL2 294 aa11.39□□□□□ -0.59
LDLR-208ENST00000558518 TICAM1Q8IUC6 712 aa11.39□□□□□ -0.59
LDLR-208ENST00000558518 REPS2Q8NFH8 660 aa11.39□□□□□ -0.59
LDLR-208ENST00000558518 RANBP9Q96S59 729 aa11.39□□□□□ -0.59
LDLR-208ENST00000558518 TKTL2Q9H0I9 626 aa11.39□□□□□ -0.59
LDLR-208ENST00000558518 SARS2Q9NP81 518 aaKnown RBP11.39□□□□□ -0.59
LDLR-208ENST00000558518 DUS2Q9NX74 493 aaKnown RBP11.39□□□□□ -0.59
LDLR-208ENST00000558518 IGSF9Q9P2J2 1179 aa11.39□□□□□ -0.59
LDLR-208ENST00000558518 TMA7Q9Y2S6 64 aaKnown RBP11.39□□□□□ -0.59
LDLR-208ENST00000558518 GOLGA8CPA6NN73 597 aa11.39□□□□□ -0.59
LDLR-208ENST00000558518 HGFP14210 728 aa11.39□□□□□ -0.59
LDLR-208ENST00000558518 STXBP5Q5T5C0 1151 aa11.39□□□□□ -0.59
LDLR-208ENST00000558518 ABRAXAS1Q6UWZ7 409 aa11.39□□□□□ -0.59
LDLR-208ENST00000558518 RETREG3Q86VR2 466 aa11.39□□□□□ -0.59
LDLR-208ENST00000558518 APPL2Q8NEU8 664 aa11.39□□□□□ -0.59
LDLR-208ENST00000558518 TAMM41Q96BW9 452 aa11.39□□□□□ -0.59
LDLR-208ENST00000558518 OTUD5Q96G74 571 aa11.39□□□□□ -0.59
LDLR-208ENST00000558518 HIPK3Q9H422 1215 aa11.39□□□□□ -0.59
LDLR-208ENST00000558518 MARCH7Q9H992 704 aa11.39□□□□□ -0.59
LDLR-208ENST00000558518 OR12D3Q9UGF7 316 aa11.39□□□□□ -0.59
LDLR-208ENST00000558518 NME4O00746 187 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 CBFA2T3O75081 653 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 APOA4P06727 396 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 CPB1P15086 417 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 DPEP1P16444 411 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 MATN1P21941 496 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 GGT5P36269 586 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 MAGEA6P43360 314 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 IREB2P48200 963 aaKnown RBP11.38□□□□□ -0.59
LDLR-208ENST00000558518 CD151P48509 253 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 PCYT1AP49585 367 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 BCAP31P51572 246 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 GRB7Q14451 532 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms