RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 FEZ2Q9UHY8 353 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-227ENST00000557269 FZD4Q9ULV1 537 aa12.9□□□□□ -0.34
SHMT2-227ENST00000557269 NCKAP1Q9Y2A7 1128 aa12.9□□□□□ -0.34
SHMT2-227ENST00000557269 AAR2Q9Y312 384 aaKnown RBP12.9□□□□□ -0.34
SHMT2-227ENST00000557269 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-227ENST00000557269 NPIPB15A6NHN6 443 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-227ENST00000557269 FAM47DPA6NHR8 397 aa12.89□□□□□ -0.35
SHMT2-227ENST00000557269 C10orf142B7Z368 130 aa12.89□□□□□ -0.35
SHMT2-227ENST00000557269 RIOK3O14730 519 aaKnown RBP12.89□□□□□ -0.35
SHMT2-227ENST00000557269 SLC7A4O43246 635 aa12.89□□□□□ -0.35
SHMT2-227ENST00000557269 PLRG1O43660 514 aaKnown RBP12.89□□□□□ -0.35
SHMT2-227ENST00000557269 NDST3O95803 873 aa12.89□□□□□ -0.35
SHMT2-227ENST00000557269 GAS8O95995 478 aa12.89□□□□□ -0.35
SHMT2-227ENST00000557269 PIRTP0C851 137 aa12.89□□□□□ -0.35
SHMT2-227ENST00000557269 IVDP26440 423 aa12.89□□□□□ -0.35
SHMT2-227ENST00000557269 CD6P30203 668 aa12.89□□□□□ -0.35
SHMT2-227ENST00000557269 ACTN2P35609 894 aa12.89□□□□□ -0.35
SHMT2-227ENST00000557269 HNF1BP35680 557 aa12.89□□□□□ -0.35
SHMT2-227ENST00000557269 FDFT1P37268 417 aa12.89□□□□□ -0.35
SHMT2-227ENST00000557269 FAM193AP78312 1265 aa12.89□□□□□ -0.35
SHMT2-227ENST00000557269 RALGDSQ12967 914 aa12.89□□□□□ -0.35
SHMT2-227ENST00000557269 PPP1R7Q15435 360 aa12.89□□□□□ -0.35
SHMT2-227ENST00000557269 USP39Q53GS9 565 aaKnown RBP12.89□□□□□ -0.35
SHMT2-227ENST00000557269 ANKRD22Q5VYY1 191 aa12.89□□□□□ -0.35
SHMT2-227ENST00000557269 DENND5AQ6IQ26 1287 aa12.89□□□□□ -0.35
SHMT2-227ENST00000557269 RANBP10Q6VN20 620 aa12.89□□□□□ -0.35
SHMT2-227ENST00000557269 KBTBD6Q86V97 674 aa12.89□□□□□ -0.35
SHMT2-227ENST00000557269 PAF1Q8N7H5 531 aa12.89□□□□□ -0.35
SHMT2-227ENST00000557269 ZBTB44Q8NCP5 570 aa12.89□□□□□ -0.35
SHMT2-227ENST00000557269 IFT43Q96FT9 208 aa12.89□□□□□ -0.35
SHMT2-227ENST00000557269 HINFPQ9BQA5 517 aa12.89□□□□□ -0.35
SHMT2-227ENST00000557269 GPR174Q9BXC1 333 aa12.89□□□□□ -0.35
SHMT2-227ENST00000557269 BTBD1Q9H0C5 482 aa12.89□□□□□ -0.35
SHMT2-227ENST00000557269 C6orf106Q9H6K1 298 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-227ENST00000557269 PIH1D1Q9NWS0 290 aaKnown RBP12.89□□□□□ -0.35
SHMT2-227ENST00000557269 ZSCAN32Q9NX65 697 aa12.89□□□□□ -0.35
SHMT2-227ENST00000557269 PHTF1Q9UMS5 762 aa12.89□□□□□ -0.35
SHMT2-227ENST00000557269 PPIL1Q9Y3C6 166 aa12.89□□□□□ -0.35
SHMT2-227ENST00000557269 SPO11Q9Y5K1 396 aa12.89□□□□□ -0.35
SHMT2-227ENST00000557269 A0A0J9YYE9 177 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 CTAGE15A4D2H0 777 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 PRR23AA6NEV1 266 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 ANKRD66B4E2M5 251 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 LILRB5O75023 590 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 RPP40O75818 363 aaKnown RBP12.88□□□□□ -0.35
SHMT2-227ENST00000557269 SEMA4FO95754 770 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 AP2A1O95782 977 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 EPOP01588 193 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 TRBC1P01850 177 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 APRTP07741 180 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 CTAGE8P0CG41 777 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 LHCGRP22888 699 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 XPAP23025 273 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-227ENST00000557269 OXTRP30559 389 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 MMP12P39900 470 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 RPL26P61254 145 aaKnown RBP12.88□□□□□ -0.35
SHMT2-227ENST00000557269 PPP2CBP62714 309 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 POLR2LP62875 67 aaKnown RBP12.88□□□□□ -0.35
SHMT2-227ENST00000557269 PPP2CAP67775 309 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 BASP1P80723 227 aaKnown RBP12.88□□□□□ -0.35
SHMT2-227ENST00000557269 MSLNQ13421 630 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-227ENST00000557269 DHX34Q14147 1143 aaKnown RBP12.88□□□□□ -0.35
SHMT2-227ENST00000557269 KCNJ11Q14654 390 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 SLC1A5Q15758 541 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 CDKN3Q16667 212 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 SEL1L3Q68CR1 1132 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 C4orf22Q6V702 233 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 TSPAN33Q86UF1 283 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 CTAGE6Q86UF2 777 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 CTAGE4Q8IX94 777 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 MMGT1Q8N4V1 131 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 GAB3Q8WWW8 586 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 CPT1BQ92523 772 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 RMDN1Q96DB5 314 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 SCRN2Q96FV2 425 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 RUNDC3BQ96NL0 473 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 MCCC1Q96RQ3 725 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-227ENST00000557269 TBL1YQ9BQ87 522 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 LRRC1Q9BTT6 524 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 WRAP53Q9BUR4 548 aaKnown RBP12.88□□□□□ -0.35
SHMT2-227ENST00000557269 FSD1LQ9BXM9 530 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 ADGRE3Q9BY15 652 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 FAM126AQ9BYI3 521 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-227ENST00000557269 SGK2Q9HBY8 427 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 B4GALT6Q9UBX8 382 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 RPL26L1Q9UNX3 145 aaKnown RBP12.88□□□□□ -0.35
SHMT2-227ENST00000557269 ZFR2Q9UPR6 939 aaKnown RBP12.88□□□□□ -0.35
SHMT2-227ENST00000557269 ARIH1Q9Y4X5 557 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-227ENST00000557269 R4GN57 208 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 NUMA1Q14980 2115 aa12.88□□□□□ -0.35
SHMT2-227ENST00000557269 TBC1D3DA0A087WVF3 549 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 TBC1D3IA0A087WXS9 549 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 TBC1D3EA0A087X179 549 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 TBC1D3KA0A087X1G2 549 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 A0A1W2PQ67 120 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 TBC1D3FA6NER0 549 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-227ENST00000557269 TBC1D3LB9A6J9 549 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 E7EVH7 732 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 AURKAO14965 403 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms