RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 KATNAL2Q8IYT4 538 aa13.82□□□□□ -0.2
SHMT2-219ENST00000555563 SLC22A18ASQ8N1D0 253 aa13.82□□□□□ -0.2
SHMT2-219ENST00000555563 CCNYQ8ND76 341 aa13.82□□□□□ -0.2
SHMT2-219ENST00000555563 DENND6BQ8NEG7 585 aa13.82□□□□□ -0.2
SHMT2-219ENST00000555563 ASB12Q8WXK4 309 aa13.82□□□□□ -0.2
SHMT2-219ENST00000555563 KRT35Q92764 455 aa13.82□□□□□ -0.2
SHMT2-219ENST00000555563 FATE1Q969F0 183 aa13.82□□□□□ -0.2
SHMT2-219ENST00000555563 BMFQ96LC9 184 aa13.82□□□□□ -0.2
SHMT2-219ENST00000555563 OLFM3Q96PB7 478 aa13.82□□□□□ -0.2
SHMT2-219ENST00000555563 LENG8Q96PV6 779 aaPredicted RBP13.82□□□□□ -0.2
SHMT2-219ENST00000555563 LGMNQ99538 433 aa13.82□□□□□ -0.2
SHMT2-219ENST00000555563 SEMA3CQ99985 751 aa13.82□□□□□ -0.2
SHMT2-219ENST00000555563 MAK16Q9BXY0 300 aaKnown RBP13.82□□□□□ -0.2
SHMT2-219ENST00000555563 ERVMER34-1Q9H9K5 563 aa13.82□□□□□ -0.2
SHMT2-219ENST00000555563 GPR27Q9NS67 375 aa13.82□□□□□ -0.2
SHMT2-219ENST00000555563 COQ6Q9Y2Z9 468 aa13.82□□□□□ -0.2
SHMT2-219ENST00000555563 TTLL3Q9Y4R7 772 aa13.82□□□□□ -0.2
SHMT2-219ENST00000555563 PCDHGC4Q9Y5F7 938 aa13.82□□□□□ -0.2
SHMT2-219ENST00000555563 GOLGA6L6A8MZA4 724 aa13.81□□□□□ -0.2
SHMT2-219ENST00000555563 KCNK1O00180 336 aa13.81□□□□□ -0.2
SHMT2-219ENST00000555563 YKT6O15498 198 aa13.81□□□□□ -0.2
SHMT2-219ENST00000555563 PJA2O43164 708 aa13.81□□□□□ -0.2
SHMT2-219ENST00000555563 CPP00450 1065 aa13.81□□□□□ -0.2
SHMT2-219ENST00000555563 HLA-DQB2P05538 268 aa13.81□□□□□ -0.2
SHMT2-219ENST00000555563 KRT10P13645 584 aa13.81□□□□□ -0.2
SHMT2-219ENST00000555563 C6P13671 934 aa13.81□□□□□ -0.2
SHMT2-219ENST00000555563 CCNB1P14635 433 aa13.81□□□□□ -0.2
SHMT2-219ENST00000555563 ZFXP17010 805 aaPredicted RBP13.81□□□□□ -0.2
SHMT2-219ENST00000555563 ARRB1P49407 418 aaPredicted RBP13.81□□□□□ -0.2
SHMT2-219ENST00000555563 DSC2Q02487 901 aa13.81□□□□□ -0.2
SHMT2-219ENST00000555563 PPIDQ08752 370 aaKnown RBP13.81□□□□□ -0.2
SHMT2-219ENST00000555563 IRF4Q15306 451 aa13.81□□□□□ -0.2
SHMT2-219ENST00000555563 LLGL1Q15334 1064 aa13.81□□□□□ -0.2
SHMT2-219ENST00000555563 RALGPS1Q5JS13 557 aa13.81□□□□□ -0.2
SHMT2-219ENST00000555563 ALG1LQ6GMV1 187 aa13.81□□□□□ -0.2
SHMT2-219ENST00000555563 SPOCD1Q6ZMY3 1216 aa13.81□□□□□ -0.2
SHMT2-219ENST00000555563 Q6ZSR6 202 aa13.81□□□□□ -0.2
SHMT2-219ENST00000555563 CCDC13Q8IYE1 715 aa13.81□□□□□ -0.2
SHMT2-219ENST00000555563 OXR1Q8N573 874 aa13.81□□□□□ -0.2
SHMT2-219ENST00000555563 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.81□□□□□ -0.2
SHMT2-219ENST00000555563 TP53I13Q8NBR0 393 aaPredicted RBP13.81□□□□□ -0.2
SHMT2-219ENST00000555563 BAHD1Q8TBE0 780 aaPredicted RBP13.81□□□□□ -0.2
SHMT2-219ENST00000555563 PDCD6IPQ8WUM4 868 aaKnown RBP13.81□□□□□ -0.2
SHMT2-219ENST00000555563 SPOCK2Q92563 424 aa13.81□□□□□ -0.2
SHMT2-219ENST00000555563 CENPTQ96BT3 561 aa13.81□□□□□ -0.2
SHMT2-219ENST00000555563 C1QTNF7Q9BXJ2 289 aa13.81□□□□□ -0.2
SHMT2-219ENST00000555563 POLR1EQ9GZS1 481 aaKnown RBP13.81□□□□□ -0.2
SHMT2-219ENST00000555563 RBM22Q9NW64 420 aaKnown RBP eCLIP13.81□□□□□ -0.28e-10■■■■■ 40.7
SHMT2-219ENST00000555563 TRIM10Q9UDY6 481 aa13.81□□□□□ -0.2
SHMT2-219ENST00000555563 HS3ST3A1Q9Y663 406 aa13.81□□□□□ -0.2
SHMT2-219ENST00000555563 TPRP12270 2363 aaKnown RBP13.81□□□□□ -0.2
SHMT2-219ENST00000555563 CNOT1A5YKK6 2376 aaKnown RBP13.8□□□□□ -0.2
SHMT2-219ENST00000555563 A0A0U1RQJ8 604 aa13.8□□□□□ -0.2
SHMT2-219ENST00000555563 GRID2IPA4D2P6 1211 aa13.8□□□□□ -0.2
SHMT2-219ENST00000555563 FPGTO14772 594 aa13.8□□□□□ -0.2
SHMT2-219ENST00000555563 SDC3O75056 442 aa13.8□□□□□ -0.2
SHMT2-219ENST00000555563 PGLSO95336 258 aa13.8□□□□□ -0.2
SHMT2-219ENST00000555563 ITGAVP06756 1048 aa13.8□□□□□ -0.2
SHMT2-219ENST00000555563 PMLP29590 882 aa13.8□□□□□ -0.2
SHMT2-219ENST00000555563 CTNNA1P35221 906 aaKnown RBP13.8□□□□□ -0.2
SHMT2-219ENST00000555563 GRK6P43250 576 aa13.8□□□□□ -0.2
SHMT2-219ENST00000555563 RABIFP47224 123 aa13.8□□□□□ -0.2
SHMT2-219ENST00000555563 RXRGP48443 463 aa13.8□□□□□ -0.2
SHMT2-219ENST00000555563 LIG3P49916 1009 aa13.8□□□□□ -0.2
SHMT2-219ENST00000555563 NAP1L1P55209 391 aaKnown RBP13.8□□□□□ -0.2
SHMT2-219ENST00000555563 ITKQ08881 620 aa13.8□□□□□ -0.2
SHMT2-219ENST00000555563 ZBTB17Q13105 803 aa13.8□□□□□ -0.2
SHMT2-219ENST00000555563 SUZ12Q15022 739 aaKnown RBP13.8□□□□□ -0.2
SHMT2-219ENST00000555563 TRIP6Q15654 476 aaKnown RBP13.8□□□□□ -0.2
SHMT2-219ENST00000555563 INAVAQ3KP66 663 aa13.8□□□□□ -0.2
SHMT2-219ENST00000555563 TFDP3Q5H9I0 405 aa13.8□□□□□ -0.2
SHMT2-219ENST00000555563 KAZNQ674X7 775 aa13.8□□□□□ -0.2
SHMT2-219ENST00000555563 DPPA4Q7L190 304 aa13.8□□□□□ -0.2
SHMT2-219ENST00000555563 CCDC50Q8IVM0 306 aa13.8□□□□□ -0.2
SHMT2-219ENST00000555563 FAM174AQ8TBP5 190 aa13.8□□□□□ -0.2
SHMT2-219ENST00000555563 SAP25Q8TEE9 199 aa13.8□□□□□ -0.2
SHMT2-219ENST00000555563 RBM41Q96IZ5 413 aaKnown RBP13.8□□□□□ -0.2
SHMT2-219ENST00000555563 CAAP1Q9H8G2 361 aa13.8□□□□□ -0.2
SHMT2-219ENST00000555563 MBNL1Q9NR56 388 aaKnown RBP13.8□□□□□ -0.2
SHMT2-219ENST00000555563 B4GALT6Q9UBX8 382 aa13.8□□□□□ -0.2
SHMT2-219ENST00000555563 AMACRQ9UHK6 382 aa13.8□□□□□ -0.2
SHMT2-219ENST00000555563 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.8□□□□□ -0.2
SHMT2-219ENST00000555563 PCDHB9Q9Y5E1 797 aa13.8□□□□□ -0.2
SHMT2-219ENST00000555563 SPTBN2O15020 2390 aa13.8□□□□□ -0.2
SHMT2-219ENST00000555563 COL5A1P20908 1838 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-219ENST00000555563 hCG_1818297A0A087WSY0 165 aa13.79□□□□□ -0.2
SHMT2-219ENST00000555563 A0A1W2PQ67 120 aa13.79□□□□□ -0.2
SHMT2-219ENST00000555563 MACROD2A1Z1Q3 448 aa13.79□□□□□ -0.2
SHMT2-219ENST00000555563 PPP1R12AO14974 1030 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-219ENST00000555563 CST8O60676 142 aa13.79□□□□□ -0.2
SHMT2-219ENST00000555563 NEBLO76041 1014 aa13.79□□□□□ -0.2
SHMT2-219ENST00000555563 ZRANB2O95218 330 aaKnown RBP eCLIP13.79□□□□□ -0.2
SHMT2-219ENST00000555563 ELFN1P0C7U0 828 aa13.79□□□□□ -0.2
SHMT2-219ENST00000555563 PECAM1P16284 738 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-219ENST00000555563 GSDMDP57764 484 aa13.79□□□□□ -0.2
SHMT2-219ENST00000555563 PFN3P60673 137 aa13.79□□□□□ -0.2
SHMT2-219ENST00000555563 POLR2LP62875 67 aaKnown RBP13.79□□□□□ -0.2
SHMT2-219ENST00000555563 IFI35P80217 286 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-219ENST00000555563 ADCY2Q08462 1091 aa13.79□□□□□ -0.2
SHMT2-219ENST00000555563 NIPAL4Q0D2K0 466 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms