RNA–Protein interactions for RNA: ENST00000554310.5

SHMT2-211, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 579 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-211ENST00000554310 GARSP41250 739 aaKnown RBP13.17□□□□□ -0.3
SHMT2-211ENST00000554310 MMP13P45452 471 aa13.17□□□□□ -0.3
SHMT2-211ENST00000554310 RABIFP47224 123 aa13.17□□□□□ -0.3
SHMT2-211ENST00000554310 SCNN1BP51168 640 aa13.17□□□□□ -0.3
SHMT2-211ENST00000554310 HADHBP55084 474 aaKnown RBP13.17□□□□□ -0.3
SHMT2-211ENST00000554310 CLDN2P57739 230 aa13.17□□□□□ -0.3
SHMT2-211ENST00000554310 TMEM52BQ4KMG9 183 aa13.17□□□□□ -0.3
SHMT2-211ENST00000554310 PRAMEF14Q5SWL7 426 aa13.17□□□□□ -0.3
SHMT2-211ENST00000554310 MARC1Q5VT66 337 aa13.17□□□□□ -0.3
SHMT2-211ENST00000554310 TIGD7Q6NT04 549 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-211ENST00000554310 CAMK1DQ8IU85 385 aa13.17□□□□□ -0.3
SHMT2-211ENST00000554310 SLC22A18ASQ8N1D0 253 aa13.17□□□□□ -0.3
SHMT2-211ENST00000554310 PAF1Q8N7H5 531 aa13.17□□□□□ -0.3
SHMT2-211ENST00000554310 FATE1Q969F0 183 aa13.17□□□□□ -0.3
SHMT2-211ENST00000554310 IFT43Q96FT9 208 aa13.17□□□□□ -0.3
SHMT2-211ENST00000554310 NUDCD1Q96RS6 583 aa13.17□□□□□ -0.3
SHMT2-211ENST00000554310 PCDH12Q9NPG4 1184 aa13.17□□□□□ -0.3
SHMT2-211ENST00000554310 HAUS2Q9NVX0 235 aa13.17□□□□□ -0.3
SHMT2-211ENST00000554310 FTSJ1Q9UET6 329 aa13.17□□□□□ -0.3
SHMT2-211ENST00000554310 APOBEC2Q9Y235 224 aaKnown RBP13.17□□□□□ -0.3
SHMT2-211ENST00000554310 EPN1Q9Y6I3 576 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-211ENST00000554310 USP24Q9UPU5 2620 aa13.16□□□□□ -0.3
SHMT2-211ENST00000554310 ARID1BQ8NFD5 2236 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-211ENST00000554310 TRAFD1O14545 582 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-211ENST00000554310 TOR1BO14657 336 aa13.16□□□□□ -0.3
SHMT2-211ENST00000554310 TNFSF14O43557 240 aa13.16□□□□□ -0.3
SHMT2-211ENST00000554310 NDUFA10O95299 355 aa13.16□□□□□ -0.3
SHMT2-211ENST00000554310 KDELR1P24390 212 aa13.16□□□□□ -0.3
SHMT2-211ENST00000554310 MAGEA1P43355 309 aa13.16□□□□□ -0.3
SHMT2-211ENST00000554310 POLR2LP62875 67 aaKnown RBP13.16□□□□□ -0.3
SHMT2-211ENST00000554310 SPA17Q15506 151 aa13.16□□□□□ -0.3
SHMT2-211ENST00000554310 IFI16Q16666 785 aaKnown RBP13.16□□□□□ -0.3
SHMT2-211ENST00000554310 ZNF662Q6ZS27 426 aa13.16□□□□□ -0.3
SHMT2-211ENST00000554310 Q6ZSR6 202 aa13.16□□□□□ -0.3
SHMT2-211ENST00000554310 ZSWIM9Q86XI8 627 aa13.16□□□□□ -0.3
SHMT2-211ENST00000554310 GATAD2AQ86YP4 633 aa13.16□□□□□ -0.3
SHMT2-211ENST00000554310 PQLC3Q8N755 202 aa13.16□□□□□ -0.3
SHMT2-211ENST00000554310 RAPGEF5Q92565 580 aa13.16□□□□□ -0.3
SHMT2-211ENST00000554310 WRAP53Q9BUR4 548 aaKnown RBP13.16□□□□□ -0.3
SHMT2-211ENST00000554310 SCUBE2Q9NQ36 999 aa13.16□□□□□ -0.3
SHMT2-211ENST00000554310 WASF3Q9UPY6 502 aa13.16□□□□□ -0.3
SHMT2-211ENST00000554310 A0A0A6YYK5 440 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-211ENST00000554310 SPTY2D1-AS1A0A0U1RR47 76 aa13.15□□□□□ -0.3
SHMT2-211ENST00000554310 CFAP69A5D8W1 941 aa13.15□□□□□ -0.3
SHMT2-211ENST00000554310 POM121BA6NF01 834 aa13.15□□□□□ -0.3
SHMT2-211ENST00000554310 HTRA2O43464 458 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-211ENST00000554310 PSTPIP1O43586 416 aa13.15□□□□□ -0.3
SHMT2-211ENST00000554310 SPOPO43791 374 aa13.15□□□□□ -0.3
SHMT2-211ENST00000554310 MMP20O60882 483 aa13.15□□□□□ -0.3
SHMT2-211ENST00000554310 IPO7O95373 1038 aaKnown RBP13.15□□□□□ -0.3
SHMT2-211ENST00000554310 SLU7O95391 586 aaKnown RBP13.15□□□□□ -0.3
SHMT2-211ENST00000554310 KRT1P04264 644 aa13.15□□□□□ -0.3
SHMT2-211ENST00000554310 C6P13671 934 aa13.15□□□□□ -0.3
SHMT2-211ENST00000554310 NFKBIAP25963 317 aa13.15□□□□□ -0.3
SHMT2-211ENST00000554310 CASQ1P31415 396 aa13.15□□□□□ -0.3
SHMT2-211ENST00000554310 IGFALSP35858 605 aa13.15□□□□□ -0.3
SHMT2-211ENST00000554310 PFN3P60673 137 aa13.15□□□□□ -0.3
SHMT2-211ENST00000554310 GNG11P61952 73 aa13.15□□□□□ -0.3
SHMT2-211ENST00000554310 GBE1Q04446 702 aa13.15□□□□□ -0.3
SHMT2-211ENST00000554310 AGERQ15109 404 aa13.15□□□□□ -0.3
SHMT2-211ENST00000554310 ODF2Q5BJF6 829 aa13.15□□□□□ -0.3
SHMT2-211ENST00000554310 DPPA4Q7L190 304 aa13.15□□□□□ -0.3
SHMT2-211ENST00000554310 KANSL1Q7Z3B3 1105 aa13.15□□□□□ -0.3
SHMT2-211ENST00000554310 RAB44Q7Z6P3 723 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-211ENST00000554310 PARGQ86W56 976 aa13.15□□□□□ -0.3
SHMT2-211ENST00000554310 RHOT1Q8IXI2 618 aa13.15□□□□□ -0.3
SHMT2-211ENST00000554310 PGBD5Q8N414 524 aa13.15□□□□□ -0.3
SHMT2-211ENST00000554310 TEX26Q8N6G2 289 aa13.15□□□□□ -0.3
SHMT2-211ENST00000554310 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-211ENST00000554310 ADAMTS14Q8WXS8 1223 aa13.15□□□□□ -0.3
SHMT2-211ENST00000554310 MAML1Q92585 1016 aa13.15□□□□□ -0.3
SHMT2-211ENST00000554310 CENPTQ96BT3 561 aa13.15□□□□□ -0.3
SHMT2-211ENST00000554310 HDAC11Q96DB2 347 aa13.15□□□□□ -0.3
SHMT2-211ENST00000554310 BMFQ96LC9 184 aa13.15□□□□□ -0.3
SHMT2-211ENST00000554310 TSGA13Q96PP4 275 aa13.15□□□□□ -0.3
SHMT2-211ENST00000554310 RNF157Q96PX1 679 aa13.15□□□□□ -0.3
SHMT2-211ENST00000554310 POLR1EQ9GZS1 481 aaKnown RBP13.15□□□□□ -0.3
SHMT2-211ENST00000554310 DDX56Q9NY93 547 aaKnown RBP13.15□□□□□ -0.3
SHMT2-211ENST00000554310 AMACRQ9UHK6 382 aa13.15□□□□□ -0.3
SHMT2-211ENST00000554310 NEUROG3Q9Y4Z2 214 aa13.15□□□□□ -0.3
SHMT2-211ENST00000554310 C3orf70A6NLC5 250 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-211ENST00000554310 MATN3O15232 486 aa13.14□□□□□ -0.31
SHMT2-211ENST00000554310 HYAL3O43820 417 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-211ENST00000554310 KIF5CO60282 957 aa13.14□□□□□ -0.31
SHMT2-211ENST00000554310 DKK1O94907 266 aa13.14□□□□□ -0.31
SHMT2-211ENST00000554310 CPP00450 1065 aa13.14□□□□□ -0.31
SHMT2-211ENST00000554310 NME1P15531 152 aaKnown RBP13.14□□□□□ -0.31
SHMT2-211ENST00000554310 ITIH2P19823 946 aa13.14□□□□□ -0.31
SHMT2-211ENST00000554310 COMTP21964 271 aa13.14□□□□□ -0.31
SHMT2-211ENST00000554310 CCNCP24863 283 aa13.14□□□□□ -0.31
SHMT2-211ENST00000554310 NOP2P46087 812 aaKnown RBP13.14□□□□□ -0.31
SHMT2-211ENST00000554310 THOP1P52888 689 aa13.14□□□□□ -0.31
SHMT2-211ENST00000554310 PDE1CQ14123 709 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-211ENST00000554310 FZD2Q14332 565 aa13.14□□□□□ -0.31
SHMT2-211ENST00000554310 IRF4Q15306 451 aa13.14□□□□□ -0.31
SHMT2-211ENST00000554310 SLC9A4Q6AI14 798 aa13.14□□□□□ -0.31
SHMT2-211ENST00000554310 ALG1LQ6GMV1 187 aa13.14□□□□□ -0.31
SHMT2-211ENST00000554310 C11orf63Q6NUN7 778 aa13.14□□□□□ -0.31
SHMT2-211ENST00000554310 PLD5Q8N7P1 536 aa13.14□□□□□ -0.31
SHMT2-211ENST00000554310 TP53I13Q8NBR0 393 aaPredicted RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms