RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 STRA8Q7Z7C7 330 aa12.34□□□□□ -0.43
SHMT2-207ENST00000553837 MRPL10Q7Z7H8 261 aaKnown RBP12.34□□□□□ -0.43
SHMT2-207ENST00000553837 SERINC5Q86VE9 423 aa12.34□□□□□ -0.43
SHMT2-207ENST00000553837 TNS4Q8IZW8 715 aa12.34□□□□□ -0.43
SHMT2-207ENST00000553837 USP33Q8TEY7 942 aa12.34□□□□□ -0.43
SHMT2-207ENST00000553837 PLEKHA8Q96JA3 519 aa12.34□□□□□ -0.43
SHMT2-207ENST00000553837 ZNF512Q96ME7 567 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-207ENST00000553837 RBBP8Q99708 897 aa12.34□□□□□ -0.43
SHMT2-207ENST00000553837 TMEM79Q9BSE2 394 aa12.34□□□□□ -0.43
SHMT2-207ENST00000553837 MTG1Q9BT17 334 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-207ENST00000553837 CCDC68Q9H2F9 335 aa12.34□□□□□ -0.43
SHMT2-207ENST00000553837 PARVBQ9HBI1 364 aa12.34□□□□□ -0.43
SHMT2-207ENST00000553837 OLAHQ9NV23 265 aa12.34□□□□□ -0.43
SHMT2-207ENST00000553837 GIT1Q9Y2X7 761 aa12.34□□□□□ -0.43
SHMT2-207ENST00000553837 A0A087WXM4 84 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 CCDC78A2IDD5 438 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 C7orf72A4D263 438 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 TNPO2O14787 897 aaKnown RBP12.33□□□□□ -0.44
SHMT2-207ENST00000553837 KLHL41O60662 606 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 NMBRP28336 390 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 SERPINB5P36952 375 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 ZNF157P51786 506 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-207ENST00000553837 MS4A2Q01362 244 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 NRF1Q16656 503 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 INSCQ1MX18 579 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 GRTP1Q5TC63 336 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 FSTL4Q6MZW2 842 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 NIPAL1Q6NVV3 410 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 SETD3Q86TU7 594 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-207ENST00000553837 DNAAF3Q8N9W5 541 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 ISL2Q96A47 359 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 C12orf43Q96C57 262 aaKnown RBP12.33□□□□□ -0.44
SHMT2-207ENST00000553837 CNDP1Q96KN2 507 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 CPNE1Q99829 537 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 GPATCH1Q9BRR8 931 aaKnown RBP12.33□□□□□ -0.44
SHMT2-207ENST00000553837 MCMBPQ9BTE3 642 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 ARHGAP39Q9C0H5 1083 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 LRRC40Q9H9A6 602 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 TRPC7Q9HCX4 862 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 CHST12Q9NRB3 414 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 EBF1Q9UH73 591 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 PADI3Q9ULW8 664 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 DOLKQ9UPQ8 538 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 TRIM17Q9Y577 477 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 HTTP42858 3142 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 PSMD12O00232 456 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-207ENST00000553837 SLC22A2O15244 555 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 B3GAT3O94766 335 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 TPPPO94811 219 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 GLDCP23378 1020 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 PIK3R1P27986 724 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 EPHA3P29320 983 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 NUMBP49757 651 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 EIF4EBP2Q13542 120 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-207ENST00000553837 CEACAM7Q14002 265 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 ARL13BQ3SXY8 428 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 INTS6LQ5JSJ4 861 aaKnown RBP12.33□□□□□ -0.44
SHMT2-207ENST00000553837 PDZD4Q76G19 769 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-207ENST00000553837 SNX32Q86XE0 403 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 PGAM4Q8N0Y7 254 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 CENPSQ8N2Z9 138 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 SPATA22Q8NHS9 363 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 MOCOSQ96EN8 888 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 TEKT5Q96M29 485 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 NEURL2Q9BR09 285 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 CDH19Q9H159 772 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 COQ10BQ9H8M1 238 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 PALMDQ9NP74 551 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 BFARQ9NZS9 450 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 COPG2Q9UBF2 871 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 ITM2BQ9Y287 266 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 AP4S1Q9Y587 144 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 RAD54BQ9Y620 910 aa12.33□□□□□ -0.44
SHMT2-207ENST00000553837 NCAM2O15394 837 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 CFLARO15519 480 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 ADAM23O75077 832 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 RNASEH2AO75792 299 aaKnown RBP12.32□□□□□ -0.44
SHMT2-207ENST00000553837 IGLV3-25P01717 112 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 MX2P20592 715 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 CDH3P22223 829 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 PCSK1P29120 753 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 RPL9P32969 192 aaKnown RBP12.32□□□□□ -0.44
SHMT2-207ENST00000553837 MSX2P35548 267 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-207ENST00000553837 LIMK2P53671 638 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 IKBKEQ14164 716 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 NDUFA5Q16718 116 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 NAPRTQ6XQN6 538 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 IFNL1Q8IU54 200 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 LRRC49Q8IUZ0 686 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 ARHGAP12Q8IWW6 846 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 ANKK1Q8NFD2 765 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 GRIN3AQ8TCU5 1115 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 CHPT1Q8WUD6 406 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 TRIB2Q92519 343 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 SIK2Q9H0K1 926 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 TPK1Q9H3S4 243 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 ACSS2Q9NR19 701 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 MAN1C1Q9NR34 630 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 NDFIP2Q9NV92 336 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 PTBP2Q9UKA9 531 aaKnown RBP12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms