RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 LYSMD4Q5XG99 296 aa13.86□□□□□ -0.19
PTCH1-213ENST00000546820 KIAA1161Q6NSJ0 714 aa13.86□□□□□ -0.19
PTCH1-213ENST00000546820 USP45Q70EL2 814 aa13.86□□□□□ -0.19
PTCH1-213ENST00000546820 TRIM69Q86WT6 500 aa13.86□□□□□ -0.19
PTCH1-213ENST00000546820 CREG2Q8IUH2 290 aa13.86□□□□□ -0.19
PTCH1-213ENST00000546820 SPATA22Q8NHS9 363 aa13.86□□□□□ -0.19
PTCH1-213ENST00000546820 CXorf40AQ8TE69 158 aa13.86□□□□□ -0.19
PTCH1-213ENST00000546820 RTP4Q96DX8 246 aa13.86□□□□□ -0.19
PTCH1-213ENST00000546820 SCRN2Q96FV2 425 aa13.86□□□□□ -0.19
PTCH1-213ENST00000546820 CAPZA3Q96KX2 299 aa13.86□□□□□ -0.19
PTCH1-213ENST00000546820 NSMCE3Q96MG7 304 aa13.86□□□□□ -0.19
PTCH1-213ENST00000546820 HSPA12BQ96MM6 686 aa13.86□□□□□ -0.19
PTCH1-213ENST00000546820 TDRD1Q9BXT4 1180 aaKnown RBP13.86□□□□□ -0.19
PTCH1-213ENST00000546820 C6orf106Q9H6K1 298 aaPredicted RBP13.86□□□□□ -0.19
PTCH1-213ENST00000546820 PCDH12Q9NPG4 1184 aa13.86□□□□□ -0.19
PTCH1-213ENST00000546820 UBP1Q9NZI7 540 aa13.86□□□□□ -0.19
PTCH1-213ENST00000546820 SMG5Q9UPR3 1016 aaKnown RBP13.86□□□□□ -0.19
PTCH1-213ENST00000546820 CHKBQ9Y259 395 aa13.86□□□□□ -0.19
PTCH1-213ENST00000546820 PPIL1Q9Y3C6 166 aa13.86□□□□□ -0.19
PTCH1-213ENST00000546820 FANCMQ8IYD8 2048 aa13.85□□□□□ -0.19
PTCH1-213ENST00000546820 PROB1E7EW31 1015 aa13.85□□□□□ -0.19
PTCH1-213ENST00000546820 AREL1O15033 823 aa13.85□□□□□ -0.19
PTCH1-213ENST00000546820 FZD6O60353 706 aa13.85□□□□□ -0.19
PTCH1-213ENST00000546820 PMPCBO75439 489 aa13.85□□□□□ -0.19
PTCH1-213ENST00000546820 MT-CYBP00156 380 aaPredicted RBP13.85□□□□□ -0.19
PTCH1-213ENST00000546820 PDHA1P08559 390 aa13.85□□□□□ -0.19
PTCH1-213ENST00000546820 CYP2A6P11509 494 aaPredicted RBP13.85□□□□□ -0.19
PTCH1-213ENST00000546820 GNSP15586 552 aa13.85□□□□□ -0.19
PTCH1-213ENST00000546820 ABL2P42684 1182 aa13.85□□□□□ -0.19
PTCH1-213ENST00000546820 PCSK7Q16549 785 aa13.85□□□□□ -0.19
PTCH1-213ENST00000546820 LPAL2Q16609 132 aa13.85□□□□□ -0.19
PTCH1-213ENST00000546820 CYP1B1Q16678 543 aa13.85□□□□□ -0.19
PTCH1-213ENST00000546820 TMEM52BQ4KMG9 183 aa13.85□□□□□ -0.19
PTCH1-213ENST00000546820 HORMAD1Q86X24 394 aa13.85□□□□□ -0.19
PTCH1-213ENST00000546820 GRK7Q8WTQ7 553 aa13.85□□□□□ -0.19
PTCH1-213ENST00000546820 PIH1D2Q8WWB5 315 aa13.85□□□□□ -0.19
PTCH1-213ENST00000546820 SNX19Q92543 992 aa13.85□□□□□ -0.19
PTCH1-213ENST00000546820 TADA1Q96BN2 335 aa13.85□□□□□ -0.19
PTCH1-213ENST00000546820 BIRC7Q96CA5 298 aa13.85□□□□□ -0.19
PTCH1-213ENST00000546820 RMDN1Q96DB5 314 aa13.85□□□□□ -0.19
PTCH1-213ENST00000546820 SRPK1Q96SB4 655 aaKnown RBP13.85□□□□□ -0.19
PTCH1-213ENST00000546820 MLPHQ9BV36 600 aaPredicted RBP13.85□□□□□ -0.19
PTCH1-213ENST00000546820 FSD1LQ9BXM9 530 aa13.85□□□□□ -0.19
PTCH1-213ENST00000546820 PAK5Q9P286 719 aa13.85□□□□□ -0.19
PTCH1-213ENST00000546820 GMEB2Q9UKD1 530 aa13.85□□□□□ -0.19
PTCH1-213ENST00000546820 DMTF1Q9Y222 760 aa13.85□□□□□ -0.19
PTCH1-213ENST00000546820 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.85□□□□□ -0.19
PTCH1-213ENST00000546820 PCDHGA5Q9Y5G8 931 aa13.85□□□□□ -0.19
PTCH1-213ENST00000546820 ABCA7Q8IZY2 2146 aa13.85□□□□□ -0.19
PTCH1-213ENST00000546820 THADAQ6YHU6 1953 aa13.85□□□□□ -0.19
PTCH1-213ENST00000546820 A0A1W2PQU0 124 aa13.84□□□□□ -0.19
PTCH1-213ENST00000546820 ANKRD66B4E2M5 251 aa13.84□□□□□ -0.19
PTCH1-213ENST00000546820 PHF2O75151 1096 aa13.84□□□□□ -0.19
PTCH1-213ENST00000546820 RETP07949 1114 aa13.84□□□□□ -0.19
PTCH1-213ENST00000546820 CD27P26842 260 aa13.84□□□□□ -0.19
PTCH1-213ENST00000546820 PSMB4P28070 264 aa13.84□□□□□ -0.19
PTCH1-213ENST00000546820 FDFT1P37268 417 aa13.84□□□□□ -0.19
PTCH1-213ENST00000546820 COILP38432 576 aaPredicted RBP13.84□□□□□ -0.19
PTCH1-213ENST00000546820 PTGER3P43115 390 aa13.84□□□□□ -0.19
PTCH1-213ENST00000546820 KCNJ1P48048 391 aa13.84□□□□□ -0.19
PTCH1-213ENST00000546820 GRIA4P48058 902 aa13.84□□□□□ -0.19
PTCH1-213ENST00000546820 GDF10P55107 478 aa13.84□□□□□ -0.19
PTCH1-213ENST00000546820 WNT3AP56704 352 aa13.84□□□□□ -0.19
PTCH1-213ENST00000546820 CREB5Q02930 508 aa13.84□□□□□ -0.19
PTCH1-213ENST00000546820 TUBB2AQ13885 445 aa13.84□□□□□ -0.19
PTCH1-213ENST00000546820 ARHGEF7Q14155 803 aa13.84□□□□□ -0.19
PTCH1-213ENST00000546820 SETMARQ53H47 684 aaPredicted RBP13.84□□□□□ -0.19
PTCH1-213ENST00000546820 CCDC137Q6PK04 289 aaKnown RBP13.84□□□□□ -0.19
PTCH1-213ENST00000546820 DPPA4Q7L190 304 aa13.84□□□□□ -0.19
PTCH1-213ENST00000546820 ARMCX6Q7L4S7 300 aa13.84□□□□□ -0.19
PTCH1-213ENST00000546820 CYP2U1Q7Z449 544 aa13.84□□□□□ -0.19
PTCH1-213ENST00000546820 KDELC2Q7Z4H8 507 aa13.84□□□□□ -0.19
PTCH1-213ENST00000546820 RABEPKQ7Z6M1 372 aa13.84□□□□□ -0.19
PTCH1-213ENST00000546820 ZSWIM9Q86XI8 627 aa13.84□□□□□ -0.19
PTCH1-213ENST00000546820 SLC41A1Q8IVJ1 513 aa13.84□□□□□ -0.19
PTCH1-213ENST00000546820 C12orf50Q8NA57 414 aaPredicted RBP13.84□□□□□ -0.19
PTCH1-213ENST00000546820 SUMF1Q8NBK3 374 aa13.84□□□□□ -0.19
PTCH1-213ENST00000546820 LPCAT1Q8NF37 534 aa13.84□□□□□ -0.19
PTCH1-213ENST00000546820 DNASE2BQ8WZ79 361 aa13.84□□□□□ -0.19
PTCH1-213ENST00000546820 ZNF592Q92610 1267 aa13.84□□□□□ -0.19
PTCH1-213ENST00000546820 RUNDC3BQ96NL0 473 aa13.84□□□□□ -0.19
PTCH1-213ENST00000546820 TUBB2BQ9BVA1 445 aa13.84□□□□□ -0.19
PTCH1-213ENST00000546820 C1QTNF7Q9BXJ2 289 aa13.84□□□□□ -0.19
PTCH1-213ENST00000546820 SLC17A9Q9BYT1 436 aa13.84□□□□□ -0.19
PTCH1-213ENST00000546820 KCTD5Q9NXV2 234 aa13.84□□□□□ -0.19
PTCH1-213ENST00000546820 SUSD2Q9UGT4 822 aa13.84□□□□□ -0.19
PTCH1-213ENST00000546820 ANKRD36A6QL64 1941 aa13.84□□□□□ -0.19
PTCH1-213ENST00000546820 A0A0J9YYE9 177 aa13.83□□□□□ -0.2
PTCH1-213ENST00000546820 LOC285095A0A1B0GVY8 99 aa13.83□□□□□ -0.2
PTCH1-213ENST00000546820 A0A1W2PPC4 97 aa13.83□□□□□ -0.2
PTCH1-213ENST00000546820 PRR5-ARHGAP8B1AHC4 643 aa13.83□□□□□ -0.2
PTCH1-213ENST00000546820 E7EVH7 732 aa13.83□□□□□ -0.2
PTCH1-213ENST00000546820 CCDC188H7C350 402 aa13.83□□□□□ -0.2
PTCH1-213ENST00000546820 LATO43561 262 aa13.83□□□□□ -0.2
PTCH1-213ENST00000546820 MMP20O60882 483 aa13.83□□□□□ -0.2
PTCH1-213ENST00000546820 TM7SF2O76062 418 aa13.83□□□□□ -0.2
PTCH1-213ENST00000546820 NDST3O95803 873 aa13.83□□□□□ -0.2
PTCH1-213ENST00000546820 GAS8O95995 478 aa13.83□□□□□ -0.2
PTCH1-213ENST00000546820 PRLP01236 227 aa13.83□□□□□ -0.2
PTCH1-213ENST00000546820 TRBC1P01850 177 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms