RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 CACNA1IQ9P0X4 2223 aa17.24■□□□□ 0.35
LIG1-204ENST00000542460 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP17.23■□□□□ 0.35
LIG1-204ENST00000542460 IGHV1OR15-9A0A0B4J2B8 117 aa17.23■□□□□ 0.35
LIG1-204ENST00000542460 ERI2A8K979 691 aaKnown RBP17.23■□□□□ 0.35
LIG1-204ENST00000542460 CD6P30203 668 aa17.23■□□□□ 0.35
LIG1-204ENST00000542460 HOXD11P31277 338 aaPredicted RBP17.23■□□□□ 0.35
LIG1-204ENST00000542460 VPS41P49754 854 aa17.23■□□□□ 0.35
LIG1-204ENST00000542460 PTPN5P54829 565 aa17.23■□□□□ 0.35
LIG1-204ENST00000542460 PTK6Q13882 451 aa17.23■□□□□ 0.35
LIG1-204ENST00000542460 KCTD11Q693B1 232 aa17.23■□□□□ 0.35
LIG1-204ENST00000542460 ERAP2Q6P179 960 aa17.23■□□□□ 0.35
LIG1-204ENST00000542460 JAMLQ86YT9 394 aa17.23■□□□□ 0.35
LIG1-204ENST00000542460 PDCD7Q8N8D1 485 aaKnown RBP17.23■□□□□ 0.35
LIG1-204ENST00000542460 OR14C36Q8NHC7 312 aa17.23■□□□□ 0.35
LIG1-204ENST00000542460 RMDN1Q96DB5 314 aa17.23■□□□□ 0.35
LIG1-204ENST00000542460 TOE1Q96GM8 510 aaKnown RBP17.23■□□□□ 0.35
LIG1-204ENST00000542460 KDM4CQ9H3R0 1056 aa17.23■□□□□ 0.35
LIG1-204ENST00000542460 LRRC40Q9H9A6 602 aa17.23■□□□□ 0.35
LIG1-204ENST00000542460 PPIL1Q9Y3C6 166 aa17.23■□□□□ 0.35
LIG1-204ENST00000542460 ANKRD66B4E2M5 251 aa17.22■□□□□ 0.35
LIG1-204ENST00000542460 TTI1O43156 1089 aa17.22■□□□□ 0.35
LIG1-204ENST00000542460 PLRG1O43660 514 aaKnown RBP17.22■□□□□ 0.35
LIG1-204ENST00000542460 AP1G1O43747 822 aa17.22■□□□□ 0.35
LIG1-204ENST00000542460 AP2A1O95782 977 aa17.22■□□□□ 0.35
LIG1-204ENST00000542460 NDST3O95803 873 aa17.22■□□□□ 0.35
LIG1-204ENST00000542460 ACSL1P33121 698 aa17.22■□□□□ 0.35
LIG1-204ENST00000542460 CNR2P34972 360 aa17.22■□□□□ 0.35
LIG1-204ENST00000542460 ADRA1AP35348 466 aa17.22■□□□□ 0.35
LIG1-204ENST00000542460 ABL2P42684 1182 aa17.22■□□□□ 0.35
LIG1-204ENST00000542460 GRIA4P48058 902 aa17.22■□□□□ 0.35
LIG1-204ENST00000542460 LMAN1P49257 510 aa17.22■□□□□ 0.35
LIG1-204ENST00000542460 ADPRHP54922 357 aa17.22■□□□□ 0.35
LIG1-204ENST00000542460 TAS2R38P59533 333 aa17.22■□□□□ 0.35
LIG1-204ENST00000542460 BASP1P80723 227 aaKnown RBP17.22■□□□□ 0.35
LIG1-204ENST00000542460 ELP6Q0PNE2 266 aa17.22■□□□□ 0.35
LIG1-204ENST00000542460 KCTD19Q17RG1 926 aaPredicted RBP17.22■□□□□ 0.35
LIG1-204ENST00000542460 RANBP10Q6VN20 620 aa17.22■□□□□ 0.35
LIG1-204ENST00000542460 FAM160A2Q8N612 972 aaPredicted RBP17.22■□□□□ 0.35
LIG1-204ENST00000542460 FRMD1Q8N878 549 aa17.22■□□□□ 0.35
LIG1-204ENST00000542460 ZBTB44Q8NCP5 570 aa17.22■□□□□ 0.35
LIG1-204ENST00000542460 LPCAT1Q8NF37 534 aa17.22■□□□□ 0.35
LIG1-204ENST00000542460 SCRN2Q96FV2 425 aa17.22■□□□□ 0.35
LIG1-204ENST00000542460 L2HGDHQ9H9P8 463 aa17.22■□□□□ 0.35
LIG1-204ENST00000542460 PCDH12Q9NPG4 1184 aa17.22■□□□□ 0.35
LIG1-204ENST00000542460 INVSQ9Y283 1065 aa17.22■□□□□ 0.35
LIG1-204ENST00000542460 PCDHGA2Q9Y5H1 932 aa17.22■□□□□ 0.35
LIG1-204ENST00000542460 FADS3Q9Y5Q0 445 aa17.22■□□□□ 0.35
LIG1-204ENST00000542460 A0A0J9YYE9 177 aa17.21■□□□□ 0.35
LIG1-204ENST00000542460 LRRC72A6NJI9 287 aa17.21■□□□□ 0.35
LIG1-204ENST00000542460 RIOK3O14730 519 aaKnown RBP17.21■□□□□ 0.35
LIG1-204ENST00000542460 AREL1O15033 823 aa17.21■□□□□ 0.35
LIG1-204ENST00000542460 AGTP01019 485 aa17.21■□□□□ 0.35
LIG1-204ENST00000542460 TRBC1P01850 177 aa17.21■□□□□ 0.35
LIG1-204ENST00000542460 APRTP07741 180 aa17.21■□□□□ 0.35
LIG1-204ENST00000542460 HLA-DPA1P20036 260 aa17.21■□□□□ 0.35
LIG1-204ENST00000542460 ADCY8P40145 1251 aa17.21■□□□□ 0.35
LIG1-204ENST00000542460 FAM193AP78312 1265 aa17.21■□□□□ 0.35
LIG1-204ENST00000542460 TCF15Q12870 199 aa17.21■□□□□ 0.35
LIG1-204ENST00000542460 SLC1A5Q15758 541 aa17.21■□□□□ 0.35
LIG1-204ENST00000542460 LRRC73Q5JTD7 316 aa17.21■□□□□ 0.35
LIG1-204ENST00000542460 NAPEPLDQ6IQ20 393 aa17.21■□□□□ 0.35
LIG1-204ENST00000542460 SLC36A4Q6YBV0 504 aa17.21■□□□□ 0.35
LIG1-204ENST00000542460 USP45Q70EL2 814 aa17.21■□□□□ 0.35
LIG1-204ENST00000542460 ALYREFQ86V81 257 aaKnown RBP17.21■□□□□ 0.35
LIG1-204ENST00000542460 C11orf74Q86VG3 221 aa17.21■□□□□ 0.35
LIG1-204ENST00000542460 TBL1YQ9BQ87 522 aa17.21■□□□□ 0.35
LIG1-204ENST00000542460 FICDQ9BVA6 458 aa17.21■□□□□ 0.35
LIG1-204ENST00000542460 PREBQ9HCU5 417 aa17.21■□□□□ 0.35
LIG1-204ENST00000542460 ASIC3Q9UHC3 531 aa17.21■□□□□ 0.35
LIG1-204ENST00000542460 TBC1D3DA0A087WVF3 549 aa17.21■□□□□ 0.34
LIG1-204ENST00000542460 TBC1D3IA0A087WXS9 549 aa17.21■□□□□ 0.34
LIG1-204ENST00000542460 TBC1D3EA0A087X179 549 aa17.21■□□□□ 0.34
LIG1-204ENST00000542460 TBC1D3KA0A087X1G2 549 aa17.21■□□□□ 0.34
LIG1-204ENST00000542460 TBC1D3FA6NER0 549 aaPredicted RBP17.21■□□□□ 0.34
LIG1-204ENST00000542460 FAM187AA6NFU0 413 aa17.21■□□□□ 0.34
LIG1-204ENST00000542460 TBC1D3LB9A6J9 549 aa17.21■□□□□ 0.34
LIG1-204ENST00000542460 NEMP1O14524 444 aa17.21■□□□□ 0.34
LIG1-204ENST00000542460 MAP3K13O43283 966 aa17.21■□□□□ 0.34
LIG1-204ENST00000542460 TSPAN6O43657 245 aa17.21■□□□□ 0.34
LIG1-204ENST00000542460 NDUFS2O75306 463 aa17.21■□□□□ 0.34
LIG1-204ENST00000542460 RPP40O75818 363 aaKnown RBP17.21■□□□□ 0.34
LIG1-204ENST00000542460 SUN1O94901 812 aa17.21■□□□□ 0.34
LIG1-204ENST00000542460 SEMA4FO95754 770 aa17.21■□□□□ 0.34
LIG1-204ENST00000542460 ATXN1LP0C7T5 689 aaKnown RBP17.21■□□□□ 0.34
LIG1-204ENST00000542460 TBC1D3HP0C7X1 549 aa17.21■□□□□ 0.34
LIG1-204ENST00000542460 GALNT3Q14435 633 aa17.21■□□□□ 0.34
LIG1-204ENST00000542460 QPCTQ16769 361 aa17.21■□□□□ 0.34
LIG1-204ENST00000542460 SYCP2LQ5T4T6 812 aa17.21■□□□□ 0.34
LIG1-204ENST00000542460 TBC1D3GQ6DHY5 549 aa17.21■□□□□ 0.34
LIG1-204ENST00000542460 TBC1D3CQ6IPX1 549 aa17.21■□□□□ 0.34
LIG1-204ENST00000542460 NEK5Q6P3R8 708 aa17.21■□□□□ 0.34
LIG1-204ENST00000542460 LINC00523Q86TU6 105 aa17.21■□□□□ 0.34
LIG1-204ENST00000542460 TBC1D3Q8IZP1 549 aaPredicted RBP17.21■□□□□ 0.34
LIG1-204ENST00000542460 MMGT1Q8N4V1 131 aa17.21■□□□□ 0.34
LIG1-204ENST00000542460 OR2T34Q8NGX1 318 aa17.21■□□□□ 0.34
LIG1-204ENST00000542460 GAB3Q8WWW8 586 aa17.21■□□□□ 0.34
LIG1-204ENST00000542460 MCCC1Q96RQ3 725 aaPredicted RBP17.21■□□□□ 0.34
LIG1-204ENST00000542460 CARD6Q9BX69 1037 aa17.21■□□□□ 0.34
LIG1-204ENST00000542460 EIF2B3Q9NR50 452 aaKnown RBP17.21■□□□□ 0.34
LIG1-204ENST00000542460 MBD1Q9UIS9 605 aaPredicted RBP17.21■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms