RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 CATSPER1Q8NEC5 780 aa12.61□□□□□ -0.39
RNF4-222ENST00000541204 RAET1EQ8TD07 263 aa12.61□□□□□ -0.39
RNF4-222ENST00000541204 SMOC2Q9H3U7 446 aa12.61□□□□□ -0.39
RNF4-222ENST00000541204 RBM22Q9NW64 420 aaKnown RBP eCLIP12.61□□□□□ -0.391e-9■■■■■ 27.3
RNF4-222ENST00000541204 ADA2Q9NZK5 511 aa12.61□□□□□ -0.39
RNF4-222ENST00000541204 ACOT9Q9Y305 439 aa12.61□□□□□ -0.39
RNF4-222ENST00000541204 RAD54BQ9Y620 910 aa12.61□□□□□ -0.39
RNF4-222ENST00000541204 SLCO1B7G3V0H7 640 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 MAFKO60675 156 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 TYMPP19971 482 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 MAXP61244 160 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 ITKQ08881 620 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 PTK2BQ14289 1009 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 MYLK3Q32MK0 819 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 CTXN3Q4LDR2 81 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 VARS2Q5ST30 1063 aaKnown RBP12.6□□□□□ -0.39
RNF4-222ENST00000541204 NAPEPLDQ6IQ20 393 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 PTAR1Q7Z6K3 402 aaPredicted RBP12.6□□□□□ -0.39
RNF4-222ENST00000541204 TMEM126BQ8IUX1 230 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 COLGALT2Q8IYK4 626 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 PCDH20Q8N6Y1 951 aaKnown RBP12.6□□□□□ -0.39
RNF4-222ENST00000541204 KDM1BQ8NB78 822 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 ZFP28Q8NHY6 868 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 ATP6V1E2Q96A05 226 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 KIFC1Q9BW19 673 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 MRPS26Q9BYN8 205 aaKnown RBP12.6□□□□□ -0.39
RNF4-222ENST00000541204 BRD8Q9H0E9 1235 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 STARD7Q9NQZ5 370 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 KCNU1A8MYU2 1149 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 RPLP2P05387 115 aaKnown RBP12.6□□□□□ -0.39
RNF4-222ENST00000541204 HLA-DQB2P05538 268 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 HNRNPLP14866 589 aaKnown RBP eCLIP12.6□□□□□ -0.39
RNF4-222ENST00000541204 CST5P28325 142 aaPredicted RBP12.6□□□□□ -0.39
RNF4-222ENST00000541204 ADSLP30566 484 aaPredicted RBP12.6□□□□□ -0.39
RNF4-222ENST00000541204 PRKAA2P54646 552 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 COG7P83436 770 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 SEPT6Q14141 434 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 HERC3Q15034 1050 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 PSMD5Q16401 504 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 NRF1Q16656 503 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 PIK3R6Q5UE93 754 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 IL23RQ5VWK5 629 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 CIR1Q86X95 450 aaPredicted RBP12.6□□□□□ -0.39
RNF4-222ENST00000541204 ABI1Q8IZP0 508 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 AHI1Q8N157 1196 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 TMEM102Q8N9M5 508 aaPredicted RBP12.6□□□□□ -0.39
RNF4-222ENST00000541204 DLG3Q92796 817 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 DTNBP1Q96EV8 351 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 GPR78Q96P69 363 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 KLHL5Q96PQ7 755 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 VAT1Q99536 393 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 SEPT5Q99719 369 aaPredicted RBP12.6□□□□□ -0.39
RNF4-222ENST00000541204 GPR62Q9BZJ7 368 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 SEMA6AQ9H2E6 1030 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 PTTG2Q9NZH5 202 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 SLC2A6Q9UGQ3 507 aa12.6□□□□□ -0.39
RNF4-222ENST00000541204 NEMP2A6NFY4 417 aa12.59□□□□□ -0.39
RNF4-222ENST00000541204 ASLP04424 464 aa12.59□□□□□ -0.39
RNF4-222ENST00000541204 FAM58BPP0C7Q3 252 aa12.59□□□□□ -0.39
RNF4-222ENST00000541204 RAB10P61026 200 aa12.59□□□□□ -0.39
RNF4-222ENST00000541204 FAM26DQ5JW98 314 aa12.59□□□□□ -0.39
RNF4-222ENST00000541204 ESRP1Q6NXG1 681 aaKnown RBP12.59□□□□□ -0.39
RNF4-222ENST00000541204 TRAF7Q6Q0C0 670 aa12.59□□□□□ -0.39
RNF4-222ENST00000541204 NUP93Q8N1F7 819 aa12.59□□□□□ -0.39
RNF4-222ENST00000541204 TBL1YQ9BQ87 522 aa12.59□□□□□ -0.39
RNF4-222ENST00000541204 FSD1LQ9BXM9 530 aa12.59□□□□□ -0.39
RNF4-222ENST00000541204 PCDHAC1Q9H158 963 aa12.59□□□□□ -0.39
RNF4-222ENST00000541204 CATSPERBQ9H7T0 1116 aa12.59□□□□□ -0.39
RNF4-222ENST00000541204 ZNF696Q9H7X3 374 aa12.59□□□□□ -0.39
RNF4-222ENST00000541204 DDX18Q9NVP1 670 aaKnown RBP12.59□□□□□ -0.39
RNF4-222ENST00000541204 NSMCE4AQ9NXX6 385 aa12.59□□□□□ -0.39
RNF4-222ENST00000541204 GTSE1Q9NYZ3 720 aa12.59□□□□□ -0.39
RNF4-222ENST00000541204 A0A1B0GTW7 788 aa12.59□□□□□ -0.39
RNF4-222ENST00000541204 FAM95CA0A1B0GW59 222 aa12.59□□□□□ -0.39
RNF4-222ENST00000541204 A0A1W2PQ45 241 aaPredicted RBP12.59□□□□□ -0.39
RNF4-222ENST00000541204 A0A1W2PQY0 241 aa12.59□□□□□ -0.39
RNF4-222ENST00000541204 SDHDO14521 159 aa12.59□□□□□ -0.39
RNF4-222ENST00000541204 CNTN5O94779 1100 aa12.59□□□□□ -0.39
RNF4-222ENST00000541204 CPB1P15086 417 aa12.59□□□□□ -0.39
RNF4-222ENST00000541204 STMN1P16949 149 aa12.59□□□□□ -0.39
RNF4-222ENST00000541204 SH3BGRP55822 239 aaPredicted RBP12.59□□□□□ -0.39
RNF4-222ENST00000541204 NKX3-2P78367 333 aa12.59□□□□□ -0.39
RNF4-222ENST00000541204 DSC1Q08554 894 aa12.59□□□□□ -0.39
RNF4-222ENST00000541204 EIF4EBP2Q13542 120 aaPredicted RBP12.59□□□□□ -0.39
RNF4-222ENST00000541204 LRRC23Q53EV4 343 aaPredicted RBP12.59□□□□□ -0.39
RNF4-222ENST00000541204 BRMS1LQ5PSV4 323 aa12.59□□□□□ -0.39
RNF4-222ENST00000541204 ZNF280DQ6N043 979 aa12.59□□□□□ -0.39
RNF4-222ENST00000541204 B3GNT6Q6ZMB0 384 aa12.59□□□□□ -0.39
RNF4-222ENST00000541204 DCP1BQ8IZD4 617 aaKnown RBP12.59□□□□□ -0.39
RNF4-222ENST00000541204 TXNDC5Q8NBS9 432 aaKnown RBP12.59□□□□□ -0.39
RNF4-222ENST00000541204 DPF3Q92784 378 aa12.59□□□□□ -0.39
RNF4-222ENST00000541204 PABPC5Q96DU9 382 aaKnown RBP12.59□□□□□ -0.39
RNF4-222ENST00000541204 ZFRQ96KR1 1074 aaKnown RBP12.59□□□□□ -0.39
RNF4-222ENST00000541204 TRIM62Q9BVG3 475 aa12.59□□□□□ -0.39
RNF4-222ENST00000541204 RBM38Q9H0Z9 239 aaKnown RBP12.59□□□□□ -0.39
RNF4-222ENST00000541204 GLOD4Q9HC38 313 aa12.59□□□□□ -0.39
RNF4-222ENST00000541204 SRRDQ9UH36 339 aa12.59□□□□□ -0.39
RNF4-222ENST00000541204 J3KR12 359 aa12.58□□□□□ -0.39
RNF4-222ENST00000541204 ALDH1A1P00352 501 aa12.58□□□□□ -0.39
RNF4-222ENST00000541204 HDCP19113 662 aa12.58□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms