RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 COPAP53621 1224 aa19.05■□□□□ 0.64
TNFRSF1A-213ENST00000540022 CDH17Q12864 832 aa19.05■□□□□ 0.64
TNFRSF1A-213ENST00000540022 STARD3Q14849 445 aa19.05■□□□□ 0.64
TNFRSF1A-213ENST00000540022 LRRC8BQ6P9F7 803 aa19.05■□□□□ 0.64
TNFRSF1A-213ENST00000540022 TMEM92Q6UXU6 159 aa19.05■□□□□ 0.64
TNFRSF1A-213ENST00000540022 MMAAQ8IVH4 418 aaKnown RBP19.05■□□□□ 0.64
TNFRSF1A-213ENST00000540022 PIP4K2CQ8TBX8 421 aa19.05■□□□□ 0.64
TNFRSF1A-213ENST00000540022 PIH1D2Q8WWB5 315 aa19.05■□□□□ 0.64
TNFRSF1A-213ENST00000540022 OSBPL1AQ9BXW6 950 aa19.05■□□□□ 0.64
TNFRSF1A-213ENST00000540022 OSBPL6Q9BZF3 934 aa19.05■□□□□ 0.64
TNFRSF1A-213ENST00000540022 RSPH9Q9H1X1 276 aaPredicted RBP19.05■□□□□ 0.64
TNFRSF1A-213ENST00000540022 ARNT2Q9HBZ2 717 aa19.05■□□□□ 0.64
TNFRSF1A-213ENST00000540022 CHURC1-FNTBB4DL54 471 aa19.05■□□□□ 0.64
TNFRSF1A-213ENST00000540022 IL1BP01584 269 aa19.05■□□□□ 0.64
TNFRSF1A-213ENST00000540022 MLNP12872 115 aa19.05■□□□□ 0.64
TNFRSF1A-213ENST00000540022 HLA-DPA1P20036 260 aa19.05■□□□□ 0.64
TNFRSF1A-213ENST00000540022 SLC8A1P32418 973 aa19.05■□□□□ 0.64
TNFRSF1A-213ENST00000540022 MAGEA3P43357 314 aa19.05■□□□□ 0.64
TNFRSF1A-213ENST00000540022 POM121L1PQ3SYA9 428 aa19.05■□□□□ 0.64
TNFRSF1A-213ENST00000540022 MSS51Q4VC12 460 aa19.05■□□□□ 0.64
TNFRSF1A-213ENST00000540022 DSG4Q86SJ6 1040 aa19.05■□□□□ 0.64
TNFRSF1A-213ENST00000540022 DNAAF3Q8N9W5 541 aa19.05■□□□□ 0.64
TNFRSF1A-213ENST00000540022 OR2T3Q8NH03 318 aa19.05■□□□□ 0.64
TNFRSF1A-213ENST00000540022 RMDN1Q96DB5 314 aa19.05■□□□□ 0.64
TNFRSF1A-213ENST00000540022 SMIM14Q96QK8 99 aa19.05■□□□□ 0.64
TNFRSF1A-213ENST00000540022 FMO2Q99518 471 aa19.05■□□□□ 0.64
TNFRSF1A-213ENST00000540022 FRMD8Q9BZ67 464 aaPredicted RBP19.05■□□□□ 0.64
TNFRSF1A-213ENST00000540022 XAB2Q9HCS7 855 aaKnown RBP19.05■□□□□ 0.64
TNFRSF1A-213ENST00000540022 FAM86C1Q9NVL1 165 aa19.05■□□□□ 0.64
TNFRSF1A-213ENST00000540022 MTRF1LQ9UGC7 380 aaKnown RBP19.05■□□□□ 0.64
TNFRSF1A-213ENST00000540022 KPNA3O00505 521 aaPredicted RBP19.04■□□□□ 0.64
TNFRSF1A-213ENST00000540022 BANF1O75531 89 aa19.04■□□□□ 0.64
TNFRSF1A-213ENST00000540022 FGF1P05230 155 aa19.04■□□□□ 0.64
TNFRSF1A-213ENST00000540022 TUBBP07437 444 aa19.04■□□□□ 0.64
TNFRSF1A-213ENST00000540022 FAM153BP0C7A2 387 aa19.04■□□□□ 0.64
TNFRSF1A-213ENST00000540022 TPH1P17752 444 aa19.04■□□□□ 0.64
TNFRSF1A-213ENST00000540022 TNNT3P45378 269 aaPredicted RBP19.04■□□□□ 0.64
TNFRSF1A-213ENST00000540022 ARL4CP56559 192 aa19.04■□□□□ 0.64
TNFRSF1A-213ENST00000540022 SESN2P58004 480 aaPredicted RBP19.04■□□□□ 0.64
TNFRSF1A-213ENST00000540022 SATB1Q01826 763 aa19.04■□□□□ 0.64
TNFRSF1A-213ENST00000540022 CRY1Q16526 586 aa19.04■□□□□ 0.64
TNFRSF1A-213ENST00000540022 HIF1AQ16665 826 aa19.04■□□□□ 0.64
TNFRSF1A-213ENST00000540022 QPCTQ16769 361 aa19.04■□□□□ 0.64
TNFRSF1A-213ENST00000540022 FAM153CQ494X1 144 aa19.04■□□□□ 0.64
TNFRSF1A-213ENST00000540022 ZNF805Q5CZA5 627 aa19.04■□□□□ 0.64
TNFRSF1A-213ENST00000540022 AGGF1Q8N302 714 aaeCLIP19.04■□□□□ 0.64
TNFRSF1A-213ENST00000540022 PAF1Q8N7H5 531 aa19.04■□□□□ 0.64
TNFRSF1A-213ENST00000540022 SPOCK2Q92563 424 aa19.04■□□□□ 0.64
TNFRSF1A-213ENST00000540022 ARRDC3Q96B67 414 aa19.04■□□□□ 0.64
TNFRSF1A-213ENST00000540022 ADGRE3Q9BY15 652 aa19.04■□□□□ 0.64
TNFRSF1A-213ENST00000540022 MKRN2Q9H000 416 aaKnown RBP19.04■□□□□ 0.64
TNFRSF1A-213ENST00000540022 IRF2BPLQ9H1B7 796 aa19.04■□□□□ 0.64
TNFRSF1A-213ENST00000540022 MYO18AQ92614 2054 aaKnown RBP19.03■□□□□ 0.64
TNFRSF1A-213ENST00000540022 TSPAN11A1L157 253 aa19.03■□□□□ 0.64
TNFRSF1A-213ENST00000540022 ANKRD66B4E2M5 251 aa19.03■□□□□ 0.64
TNFRSF1A-213ENST00000540022 PPFIA2O75334 1257 aa19.03■□□□□ 0.64
TNFRSF1A-213ENST00000540022 CPP00450 1065 aa19.03■□□□□ 0.64
TNFRSF1A-213ENST00000540022 MCM3P25205 808 aa19.03■□□□□ 0.64
TNFRSF1A-213ENST00000540022 PSMD8P48556 350 aa19.03■□□□□ 0.64
TNFRSF1A-213ENST00000540022 RPL26P61254 145 aaKnown RBP19.03■□□□□ 0.64
TNFRSF1A-213ENST00000540022 MSLNQ13421 630 aaPredicted RBP19.03■□□□□ 0.64
TNFRSF1A-213ENST00000540022 PTPRRQ15256 657 aa19.03■□□□□ 0.64
TNFRSF1A-213ENST00000540022 CERCAMQ5T4B2 595 aa19.03■□□□□ 0.64
TNFRSF1A-213ENST00000540022 CFAP58Q5T655 872 aa19.03■□□□□ 0.64
TNFRSF1A-213ENST00000540022 CACUL1Q86Y37 369 aa19.03■□□□□ 0.64
TNFRSF1A-213ENST00000540022 PDIK1LQ8N165 341 aa19.03■□□□□ 0.64
TNFRSF1A-213ENST00000540022 ATOH1Q92858 354 aaPredicted RBP19.03■□□□□ 0.64
TNFRSF1A-213ENST00000540022 FOXP3Q9BZS1 431 aa19.03■□□□□ 0.64
TNFRSF1A-213ENST00000540022 SLC6A17Q9H1V8 727 aa19.03■□□□□ 0.64
TNFRSF1A-213ENST00000540022 DKK3Q9UBP4 350 aa19.03■□□□□ 0.64
TNFRSF1A-213ENST00000540022 RPL26L1Q9UNX3 145 aaKnown RBP19.03■□□□□ 0.64
TNFRSF1A-213ENST00000540022 ATG2BQ96BY7 2078 aa19.02■□□□□ 0.64
TNFRSF1A-213ENST00000540022 UQCRHLA0A096LP55 91 aa19.02■□□□□ 0.64
TNFRSF1A-213ENST00000540022 C16orf96A6NNT2 1141 aa19.02■□□□□ 0.64
TNFRSF1A-213ENST00000540022 E7ESA3 106 aa19.02■□□□□ 0.64
TNFRSF1A-213ENST00000540022 C1QTNF3-AMACRE9PGA6 284 aa19.02■□□□□ 0.64
TNFRSF1A-213ENST00000540022 RNASEH1O60930 286 aaKnown RBP19.02■□□□□ 0.64
TNFRSF1A-213ENST00000540022 PRKCGP05129 697 aa19.02■□□□□ 0.64
TNFRSF1A-213ENST00000540022 UQCRHP07919 91 aa19.02■□□□□ 0.64
TNFRSF1A-213ENST00000540022 PIRTP0C851 137 aa19.02■□□□□ 0.64
TNFRSF1A-213ENST00000540022 MGAT1P26572 445 aa19.02■□□□□ 0.64
TNFRSF1A-213ENST00000540022 EPHB1P54762 984 aa19.02■□□□□ 0.64
TNFRSF1A-213ENST00000540022 RPS14P62263 151 aaKnown RBP19.02■□□□□ 0.64
TNFRSF1A-213ENST00000540022 DHX9Q08211 1270 aaKnown RBP19.02■□□□□ 0.64
TNFRSF1A-213ENST00000540022 ANGPT1Q15389 498 aa19.02■□□□□ 0.64
TNFRSF1A-213ENST00000540022 CST6Q15828 149 aa19.02■□□□□ 0.64
TNFRSF1A-213ENST00000540022 BBS9Q3SYG4 887 aa19.02■□□□□ 0.64
TNFRSF1A-213ENST00000540022 BRAT1Q6PJG6 821 aa19.02■□□□□ 0.64
TNFRSF1A-213ENST00000540022 PARS2Q7L3T8 475 aaKnown RBP19.02■□□□□ 0.64
TNFRSF1A-213ENST00000540022 SYT13Q7L8C5 426 aa19.02■□□□□ 0.64
TNFRSF1A-213ENST00000540022 ALYREFQ86V81 257 aaKnown RBP19.02■□□□□ 0.64
TNFRSF1A-213ENST00000540022 CCDC25Q86WR0 208 aa19.02■□□□□ 0.64
TNFRSF1A-213ENST00000540022 HCAR2Q8TDS4 363 aa19.02■□□□□ 0.64
TNFRSF1A-213ENST00000540022 SIGLEC10Q96LC7 697 aa19.02■□□□□ 0.64
TNFRSF1A-213ENST00000540022 CHRDQ9H2X0 955 aa19.02■□□□□ 0.64
TNFRSF1A-213ENST00000540022 FBRSQ9HAH7 460 aa19.02■□□□□ 0.64
TNFRSF1A-213ENST00000540022 PHTF1Q9UMS5 762 aa19.02■□□□□ 0.64
TNFRSF1A-213ENST00000540022 A0A1W2PQ67 120 aa19.01■□□□□ 0.63
TNFRSF1A-213ENST00000540022 AP3B1O00203 1094 aa19.01■□□□□ 0.63
TNFRSF1A-213ENST00000540022 PLK4O00444 970 aa19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms