RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 RIOK3O14730 519 aaKnown RBP15.15■□□□□ 0.02
CPSF1-208ENST00000532560 MAGEC1O60732 1142 aa15.15■□□□□ 0.02
CPSF1-208ENST00000532560 NEBLO76041 1014 aa15.15■□□□□ 0.02
CPSF1-208ENST00000532560 CCDC175P0C221 793 aa15.15■□□□□ 0.02
CPSF1-208ENST00000532560 PECAM1P16284 738 aaPredicted RBP15.15■□□□□ 0.02
CPSF1-208ENST00000532560 PEX5P50542 639 aa15.15■□□□□ 0.02
CPSF1-208ENST00000532560 NXPH1P58417 271 aa15.15■□□□□ 0.02
CPSF1-208ENST00000532560 POLR2LP62875 67 aaKnown RBP15.15■□□□□ 0.02
CPSF1-208ENST00000532560 ADCY2Q08462 1091 aa15.15■□□□□ 0.02
CPSF1-208ENST00000532560 TRAF2Q12933 501 aa15.15■□□□□ 0.02
CPSF1-208ENST00000532560 ZBTB17Q13105 803 aa15.15■□□□□ 0.02
CPSF1-208ENST00000532560 SLC14A1Q13336 389 aa15.15■□□□□ 0.02
CPSF1-208ENST00000532560 STAT4Q14765 748 aa15.15■□□□□ 0.02
CPSF1-208ENST00000532560 PRKD1Q15139 912 aaPredicted RBP15.15■□□□□ 0.02
CPSF1-208ENST00000532560 ZNF423Q2M1K9 1284 aa15.15■□□□□ 0.02
CPSF1-208ENST00000532560 HLA-BQ31612 363 aa15.15■□□□□ 0.02
CPSF1-208ENST00000532560 ZNF662Q6ZS27 426 aa15.15■□□□□ 0.02
CPSF1-208ENST00000532560 BBS12Q6ZW61 710 aa15.15■□□□□ 0.02
CPSF1-208ENST00000532560 PEX26Q7Z412 305 aa15.15■□□□□ 0.02
CPSF1-208ENST00000532560 DENND6BQ8NEG7 585 aa15.15■□□□□ 0.02
CPSF1-208ENST00000532560 MYRIPQ8NFW9 859 aa15.15■□□□□ 0.02
CPSF1-208ENST00000532560 FAM174AQ8TBP5 190 aa15.15■□□□□ 0.02
CPSF1-208ENST00000532560 CXorf40AQ8TE69 158 aa15.15■□□□□ 0.02
CPSF1-208ENST00000532560 LRRN4Q8WUT4 740 aa15.15■□□□□ 0.02
CPSF1-208ENST00000532560 LENG8Q96PV6 779 aaPredicted RBP15.15■□□□□ 0.02
CPSF1-208ENST00000532560 IL12RB2Q99665 862 aa15.15■□□□□ 0.02
CPSF1-208ENST00000532560 SEMA3CQ99985 751 aa15.15■□□□□ 0.02
CPSF1-208ENST00000532560 GAREM1Q9H706 876 aa15.15■□□□□ 0.02
CPSF1-208ENST00000532560 FZD3Q9NPG1 666 aa15.15■□□□□ 0.02
CPSF1-208ENST00000532560 FNDC3AQ9Y2H6 1198 aaKnown RBP15.15■□□□□ 0.02
CPSF1-208ENST00000532560 CAPN6Q9Y6Q1 641 aa15.15■□□□□ 0.02
CPSF1-208ENST00000532560 TLR4O00206 839 aa15.14■□□□□ 0.01
CPSF1-208ENST00000532560 DFNA5O60443 496 aa15.14■□□□□ 0.01
CPSF1-208ENST00000532560 PGLSO95336 258 aa15.14■□□□□ 0.01
CPSF1-208ENST00000532560 CPP00450 1065 aa15.14■□□□□ 0.01
CPSF1-208ENST00000532560 JCHAINP01591 159 aa15.14■□□□□ 0.01
CPSF1-208ENST00000532560 ITIH2P19823 946 aa15.14■□□□□ 0.01
CPSF1-208ENST00000532560 DSC2Q02487 901 aa15.14■□□□□ 0.01
CPSF1-208ENST00000532560 ITKQ08881 620 aa15.14■□□□□ 0.01
CPSF1-208ENST00000532560 AP1B1Q10567 949 aa15.14■□□□□ 0.01
CPSF1-208ENST00000532560 SGCGQ13326 291 aa15.14■□□□□ 0.01
CPSF1-208ENST00000532560 LLGL1Q15334 1064 aa15.14■□□□□ 0.01
CPSF1-208ENST00000532560 UAP1L1Q3KQV9 507 aa15.14■□□□□ 0.01
CPSF1-208ENST00000532560 GCNT7Q6ZNI0 430 aa15.14■□□□□ 0.01
CPSF1-208ENST00000532560 ABI3BPQ7Z7G0 1075 aa15.14■□□□□ 0.01
CPSF1-208ENST00000532560 UBL4BQ8N7F7 174 aa15.14■□□□□ 0.01
CPSF1-208ENST00000532560 UBE2Q2Q8WVN8 375 aa15.14■□□□□ 0.01
CPSF1-208ENST00000532560 P3H4Q92791 437 aa15.14■□□□□ 0.01
CPSF1-208ENST00000532560 KLF6Q99612 283 aaPredicted RBP15.14■□□□□ 0.01
CPSF1-208ENST00000532560 MYOCQ99972 504 aa15.14■□□□□ 0.01
CPSF1-208ENST00000532560 KCNF1Q9H3M0 494 aa15.14■□□□□ 0.01
CPSF1-208ENST00000532560 IL21RQ9HBE5 538 aa15.14■□□□□ 0.01
CPSF1-208ENST00000532560 GDF3Q9NR23 364 aa15.14■□□□□ 0.01
CPSF1-208ENST00000532560 SAE1Q9UBE0 346 aaPredicted RBP15.14■□□□□ 0.01
CPSF1-208ENST00000532560 CA5BQ9Y2D0 317 aa15.14■□□□□ 0.01
CPSF1-208ENST00000532560 TTLL3Q9Y4R7 772 aa15.14■□□□□ 0.01
CPSF1-208ENST00000532560 PCDHGC4Q9Y5F7 938 aa15.14■□□□□ 0.01
CPSF1-208ENST00000532560 HS3ST3A1Q9Y663 406 aa15.14■□□□□ 0.01
CPSF1-208ENST00000532560 ASCC3Q8N3C0 2202 aaKnown RBP15.14■□□□□ 0.01
CPSF1-208ENST00000532560 TMEM131Q92545 1883 aa15.14■□□□□ 0.01
CPSF1-208ENST00000532560 DCHS1Q96JQ0 3298 aa15.13■□□□□ 0.01
CPSF1-208ENST00000532560 UQCRHLA0A096LP55 91 aa15.13■□□□□ 0.01
CPSF1-208ENST00000532560 DCDC2BA2VCK2 349 aa15.13■□□□□ 0.01
CPSF1-208ENST00000532560 CFAP69A5D8W1 941 aa15.13■□□□□ 0.01
CPSF1-208ENST00000532560 A6NNZ2 444 aa15.13■□□□□ 0.01
CPSF1-208ENST00000532560 APOC4-APOC2K7ER74 178 aa15.13■□□□□ 0.01
CPSF1-208ENST00000532560 RAD51BO15315 384 aa15.13■□□□□ 0.01
CPSF1-208ENST00000532560 MMP20O60882 483 aa15.13■□□□□ 0.01
CPSF1-208ENST00000532560 TM7SF2O76062 418 aa15.13■□□□□ 0.01
CPSF1-208ENST00000532560 FTCDO95954 541 aa15.13■□□□□ 0.01
CPSF1-208ENST00000532560 APOC2P02655 101 aa15.13■□□□□ 0.01
CPSF1-208ENST00000532560 UQCRHP07919 91 aa15.13■□□□□ 0.01
CPSF1-208ENST00000532560 NFKBIAP25963 317 aa15.13■□□□□ 0.01
CPSF1-208ENST00000532560 CETN2P41208 172 aa15.13■□□□□ 0.01
CPSF1-208ENST00000532560 CCT8P50990 548 aa15.13■□□□□ 0.01
CPSF1-208ENST00000532560 RALGDSQ12967 914 aa15.13■□□□□ 0.01
CPSF1-208ENST00000532560 ARMC12Q5T9G4 340 aa15.13■□□□□ 0.01
CPSF1-208ENST00000532560 KYAT3Q6YP21 454 aaKnown RBP15.13■□□□□ 0.01
CPSF1-208ENST00000532560 DPPA4Q7L190 304 aa15.13■□□□□ 0.01
CPSF1-208ENST00000532560 DGLUCYQ7Z3D6 616 aa15.13■□□□□ 0.01
CPSF1-208ENST00000532560 PAF1Q8N7H5 531 aa15.13■□□□□ 0.01
CPSF1-208ENST00000532560 ARRDC2Q8TBH0 407 aa15.13■□□□□ 0.01
CPSF1-208ENST00000532560 TFB1MQ8WVM0 346 aaKnown RBP15.13■□□□□ 0.01
CPSF1-208ENST00000532560 WRAP53Q9BUR4 548 aaKnown RBP15.13■□□□□ 0.01
CPSF1-208ENST00000532560 C1QTNF7Q9BXJ2 289 aa15.13■□□□□ 0.01
CPSF1-208ENST00000532560 HEMGNQ9BXL5 484 aa15.13■□□□□ 0.01
CPSF1-208ENST00000532560 OSBPL8Q9BZF1 889 aa15.13■□□□□ 0.01
CPSF1-208ENST00000532560 ERVMER34-1Q9H9K5 563 aa15.13■□□□□ 0.01
CPSF1-208ENST00000532560 GPR27Q9NS67 375 aa15.13■□□□□ 0.01
CPSF1-208ENST00000532560 PHTF1Q9UMS5 762 aa15.13■□□□□ 0.01
CPSF1-208ENST00000532560 GUCA1BQ9UMX6 200 aa15.13■□□□□ 0.01
CPSF1-208ENST00000532560 PCDHGB2Q9Y5G2 931 aa15.13■□□□□ 0.01
CPSF1-208ENST00000532560 RAI2Q9Y5P3 530 aa15.13■□□□□ 0.01
CPSF1-208ENST00000532560 HACD1B0YJ81 288 aa15.12■□□□□ 0.01
CPSF1-208ENST00000532560 H0Y8X5 98 aa15.12■□□□□ 0.01
CPSF1-208ENST00000532560 YKT6O15498 198 aa15.12■□□□□ 0.01
CPSF1-208ENST00000532560 DDX3YO15523 660 aaKnown RBP15.12■□□□□ 0.01
CPSF1-208ENST00000532560 MTSS1O43312 755 aa15.12■□□□□ 0.01
CPSF1-208ENST00000532560 FZD6O60353 706 aa15.12■□□□□ 0.01
CPSF1-208ENST00000532560 PAK4O96013 591 aaPredicted RBP15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms