RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 ARHGAP12Q8IWW6 846 aa16.96■□□□□ 0.31
CPSF1-207ENST00000531727 SLC35F3Q8IY50 421 aa16.96■□□□□ 0.31
CPSF1-207ENST00000531727 LSMEM2Q8N112 164 aa16.96■□□□□ 0.31
CPSF1-207ENST00000531727 FSTL5Q8N475 847 aaPredicted RBP16.96■□□□□ 0.31
CPSF1-207ENST00000531727 CLPBQ9H078 707 aa16.96■□□□□ 0.31
CPSF1-207ENST00000531727 ATP13A3Q9H7F0 1226 aa16.96■□□□□ 0.31
CPSF1-207ENST00000531727 POLR1BQ9H9Y6 1135 aa16.96■□□□□ 0.31
CPSF1-207ENST00000531727 ATP8A1Q9Y2Q0 1164 aa16.96■□□□□ 0.31
CPSF1-207ENST00000531727 RAI2Q9Y5P3 530 aa16.96■□□□□ 0.31
CPSF1-207ENST00000531727 LRP4O75096 1905 aa16.96■□□□□ 0.3
CPSF1-207ENST00000531727 DDX3XO00571 662 aaKnown RBP eCLIP16.95■□□□□ 0.3
CPSF1-207ENST00000531727 PRPSAP2O60256 369 aa16.95■□□□□ 0.3
CPSF1-207ENST00000531727 LRCH4O75427 683 aa16.95■□□□□ 0.3
CPSF1-207ENST00000531727 PALMO75781 387 aa16.95■□□□□ 0.3
CPSF1-207ENST00000531727 SERPINA4P29622 427 aa16.95■□□□□ 0.3
CPSF1-207ENST00000531727 HK3P52790 923 aa16.95■□□□□ 0.3
CPSF1-207ENST00000531727 PCBP4P57723 403 aaKnown RBP16.95■□□□□ 0.3
CPSF1-207ENST00000531727 IL10RBQ08334 325 aa16.95■□□□□ 0.3
CPSF1-207ENST00000531727 KLHL30Q0D2K2 578 aa16.95■□□□□ 0.3
CPSF1-207ENST00000531727 RFTN1Q14699 578 aaPredicted RBP16.95■□□□□ 0.3
CPSF1-207ENST00000531727 NFATC4Q14934 902 aa16.95■□□□□ 0.3
CPSF1-207ENST00000531727 PPP6R3Q5H9R7 873 aaPredicted RBP16.95■□□□□ 0.3
CPSF1-207ENST00000531727 PERM1Q5SV97 790 aa16.95■□□□□ 0.3
CPSF1-207ENST00000531727 NPWQ8N729 165 aa16.95■□□□□ 0.3
CPSF1-207ENST00000531727 ZNF248Q8NDW4 579 aa16.95■□□□□ 0.3
CPSF1-207ENST00000531727 NAT6Q93015 286 aa16.95■□□□□ 0.3
CPSF1-207ENST00000531727 GRAMD1AQ96CP6 724 aa16.95■□□□□ 0.3
CPSF1-207ENST00000531727 UBL7Q96S82 380 aaPredicted RBP16.95■□□□□ 0.3
CPSF1-207ENST00000531727 LGMNQ99538 433 aa16.95■□□□□ 0.3
CPSF1-207ENST00000531727 APOOQ9BUR5 198 aa16.95■□□□□ 0.3
CPSF1-207ENST00000531727 CINPQ9BW66 212 aaPredicted RBP16.95■□□□□ 0.3
CPSF1-207ENST00000531727 SP110Q9HB58 689 aa16.95■□□□□ 0.3
CPSF1-207ENST00000531727 CNOT8Q9UFF9 292 aaKnown RBP16.95■□□□□ 0.3
CPSF1-207ENST00000531727 SCINQ9Y6U3 715 aa16.95■□□□□ 0.3
CPSF1-207ENST00000531727 A0A1B0GTH6 734 aa16.94■□□□□ 0.3
CPSF1-207ENST00000531727 CFAP69A5D8W1 941 aa16.94■□□□□ 0.3
CPSF1-207ENST00000531727 DFFAO00273 331 aa16.94■□□□□ 0.3
CPSF1-207ENST00000531727 TCEA3O75764 348 aa16.94■□□□□ 0.3
CPSF1-207ENST00000531727 PRKCGP05129 697 aa16.94■□□□□ 0.3
CPSF1-207ENST00000531727 CELA2BP08218 269 aaPredicted RBP16.94■□□□□ 0.3
CPSF1-207ENST00000531727 HTR1BP28222 390 aa16.94■□□□□ 0.3
CPSF1-207ENST00000531727 HCAR3P49019 387 aa16.94■□□□□ 0.3
CPSF1-207ENST00000531727 ERVPABLB-1P60509 514 aa16.94■□□□□ 0.3
CPSF1-207ENST00000531727 TLE3Q04726 772 aa16.94■□□□□ 0.3
CPSF1-207ENST00000531727 NSUN2Q08J23 767 aaKnown RBP eCLIP16.94■□□□□ 0.3
CPSF1-207ENST00000531727 INPP5AQ14642 412 aa16.94■□□□□ 0.3
CPSF1-207ENST00000531727 ELOCQ15369 112 aa16.94■□□□□ 0.3
CPSF1-207ENST00000531727 ALG11Q2TAA5 492 aa16.94■□□□□ 0.3
CPSF1-207ENST00000531727 ESRP1Q6NXG1 681 aaKnown RBP16.94■□□□□ 0.3
CPSF1-207ENST00000531727 CRTC1Q6UUV9 634 aa16.94■□□□□ 0.3
CPSF1-207ENST00000531727 RBM44Q6ZP01 1051 aaKnown RBP16.94■□□□□ 0.3
CPSF1-207ENST00000531727 ARHGAP36Q6ZRI8 547 aa16.94■□□□□ 0.3
CPSF1-207ENST00000531727 HID1Q8IV36 788 aa16.94■□□□□ 0.3
CPSF1-207ENST00000531727 SPACA3Q8IXA5 215 aa16.94■□□□□ 0.3
CPSF1-207ENST00000531727 TSACCQ96A04 125 aaPredicted RBP16.94■□□□□ 0.3
CPSF1-207ENST00000531727 ZNF653Q96CK0 615 aa16.94■□□□□ 0.3
CPSF1-207ENST00000531727 ECHDC3Q96DC8 303 aa16.94■□□□□ 0.3
CPSF1-207ENST00000531727 TRIM11Q96F44 468 aa16.94■□□□□ 0.3
CPSF1-207ENST00000531727 HIC2Q96JB3 615 aa16.94■□□□□ 0.3
CPSF1-207ENST00000531727 NAP1L5Q96NT1 182 aaPredicted RBP16.94■□□□□ 0.3
CPSF1-207ENST00000531727 FCRL3Q96P31 734 aaPredicted RBP16.94■□□□□ 0.3
CPSF1-207ENST00000531727 EDEM3Q9BZQ6 932 aa16.94■□□□□ 0.3
CPSF1-207ENST00000531727 CWC15Q9P013 229 aaKnown RBP16.94■□□□□ 0.3
CPSF1-207ENST00000531727 SMG1Q96Q15 3661 aaKnown RBP16.94■□□□□ 0.3
CPSF1-207ENST00000531727 EIF4E1BA6NMX2 242 aaKnown RBP16.93■□□□□ 0.3
CPSF1-207ENST00000531727 RASGRP1O95267 797 aa16.93■□□□□ 0.3
CPSF1-207ENST00000531727 PCCBP05166 539 aa16.93■□□□□ 0.3
CPSF1-207ENST00000531727 ALPIP09923 528 aa16.93■□□□□ 0.3
CPSF1-207ENST00000531727 CTSEP14091 401 aa16.93■□□□□ 0.3
CPSF1-207ENST00000531727 BCL2L1Q07817 233 aa16.93■□□□□ 0.3
CPSF1-207ENST00000531727 MTM1Q13496 603 aa16.93■□□□□ 0.3
CPSF1-207ENST00000531727 DPYSQ14117 519 aa16.93■□□□□ 0.3
CPSF1-207ENST00000531727 LVRNQ6Q4G3 990 aa16.93■□□□□ 0.3
CPSF1-207ENST00000531727 IGF2-ASQ6U949 168 aa16.93■□□□□ 0.3
CPSF1-207ENST00000531727 ENPP7Q6UWV6 458 aa16.93■□□□□ 0.3
CPSF1-207ENST00000531727 SDR16C5Q8N3Y7 309 aa16.93■□□□□ 0.3
CPSF1-207ENST00000531727 LZTR1Q8N653 840 aa16.93■□□□□ 0.3
CPSF1-207ENST00000531727 ATL2Q8NHH9 583 aa16.93■□□□□ 0.3
CPSF1-207ENST00000531727 WDR48Q8TAF3 677 aa16.93■□□□□ 0.3
CPSF1-207ENST00000531727 SCG3Q8WXD2 468 aaKnown RBP16.93■□□□□ 0.3
CPSF1-207ENST00000531727 CCDC3Q9BQI4 270 aa16.93■□□□□ 0.3
CPSF1-207ENST00000531727 MRPL47Q9HD33 250 aaKnown RBP16.93■□□□□ 0.3
CPSF1-207ENST00000531727 ASCL3Q9NQ33 180 aa16.93■□□□□ 0.3
CPSF1-207ENST00000531727 MYO1AQ9UBC5 1043 aa16.93■□□□□ 0.3
CPSF1-207ENST00000531727 PADI4Q9UM07 663 aa16.93■□□□□ 0.3
CPSF1-207ENST00000531727 DOLKQ9UPQ8 538 aa16.93■□□□□ 0.3
CPSF1-207ENST00000531727 SATB2Q9UPW6 733 aa16.93■□□□□ 0.3
CPSF1-207ENST00000531727 OR1A2Q9Y585 309 aa16.93■□□□□ 0.3
CPSF1-207ENST00000531727 ENTPD2Q9Y5L3 495 aa16.93■□□□□ 0.3
CPSF1-207ENST00000531727 ATRXP46100 2492 aa16.92■□□□□ 0.3
CPSF1-207ENST00000531727 MYBL1P10243 752 aa16.92■□□□□ 0.3
CPSF1-207ENST00000531727 PCK1P35558 622 aa16.92■□□□□ 0.3
CPSF1-207ENST00000531727 ZNF165P49910 485 aa16.92■□□□□ 0.3
CPSF1-207ENST00000531727 SRP54P61011 504 aaKnown RBP16.92■□□□□ 0.3
CPSF1-207ENST00000531727 RALGDSQ12967 914 aa16.92■□□□□ 0.3
CPSF1-207ENST00000531727 LBRQ14739 615 aaKnown RBP16.92■□□□□ 0.3
CPSF1-207ENST00000531727 C3orf38Q5JPI3 329 aa16.92■□□□□ 0.3
CPSF1-207ENST00000531727 RD3Q7Z3Z2 195 aa16.92■□□□□ 0.3
CPSF1-207ENST00000531727 PAF1Q8N7H5 531 aa16.92■□□□□ 0.3
CPSF1-207ENST00000531727 ARL10Q8N8L6 244 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms