RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 ZFATQ9P243 1243 aa21.36■■□□□ 1.01
VPS28-212ENST00000530836 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP21.35■■□□□ 1.01
VPS28-212ENST00000530836 TTC24A2A3L6 582 aaPredicted RBP21.35■■□□□ 1.01
VPS28-212ENST00000530836 SHISA7A6NL88 538 aa21.35■■□□□ 1.01
VPS28-212ENST00000530836 SPECC1L-ADORA2AF8WAN1 911 aa21.35■■□□□ 1.01
VPS28-212ENST00000530836 KRT38O76015 456 aa21.35■■□□□ 1.01
VPS28-212ENST00000530836 CTHP32929 405 aa21.35■■□□□ 1.01
VPS28-212ENST00000530836 CHRNA4P43681 627 aa21.35■■□□□ 1.01
VPS28-212ENST00000530836 PDPK2PQ6A1A2 396 aa21.35■■□□□ 1.01
VPS28-212ENST00000530836 TPRG1Q6ZUI0 275 aa21.35■■□□□ 1.01
VPS28-212ENST00000530836 SRLQ86TD4 932 aa21.35■■□□□ 1.01
VPS28-212ENST00000530836 TRABD2AQ86V40 505 aa21.35■■□□□ 1.01
VPS28-212ENST00000530836 CYP4X1Q8N118 509 aa21.35■■□□□ 1.01
VPS28-212ENST00000530836 GABPB2Q8TAK5 448 aaPredicted RBP21.35■■□□□ 1.01
VPS28-212ENST00000530836 WFIKKN2Q8TEU8 576 aa21.35■■□□□ 1.01
VPS28-212ENST00000530836 FCRL3Q96P31 734 aaPredicted RBP21.35■■□□□ 1.01
VPS28-212ENST00000530836 FCF1Q9Y324 198 aaKnown RBP21.35■■□□□ 1.01
VPS28-212ENST00000530836 KIF26AQ9ULI4 1882 aaPredicted RBP21.35■■□□□ 1.01
VPS28-212ENST00000530836 CUL9Q8IWT3 2517 aa21.34■■□□□ 1.01
VPS28-212ENST00000530836 TMEM221A6NGB7 291 aa21.34■■□□□ 1.01
VPS28-212ENST00000530836 M0R296 226 aa21.34■■□□□ 1.01
VPS28-212ENST00000530836 MAN2B1O00754 1011 aa21.34■■□□□ 1.01
VPS28-212ENST00000530836 MT-CO1P00395 513 aa21.34■■□□□ 1.01
VPS28-212ENST00000530836 GAB4Q2WGN9 574 aa21.34■■□□□ 1.01
VPS28-212ENST00000530836 MRRFQ96E11 262 aaKnown RBP21.34■■□□□ 1.01
VPS28-212ENST00000530836 CHFRQ96EP1 664 aa21.34■■□□□ 1.01
VPS28-212ENST00000530836 MFSD3Q96ES6 412 aa21.34■■□□□ 1.01
VPS28-212ENST00000530836 EXOC2Q96KP1 924 aa21.34■■□□□ 1.01
VPS28-212ENST00000530836 TXNDC16Q9P2K2 825 aa21.34■■□□□ 1.01
VPS28-212ENST00000530836 RIMKLBQ9ULI2 386 aa21.34■■□□□ 1.01
VPS28-212ENST00000530836 CXorf49A8MYA2 514 aaPredicted RBP21.33■■□□□ 1.01
VPS28-212ENST00000530836 DLL1O00548 723 aa21.33■■□□□ 1.01
VPS28-212ENST00000530836 IGSF6O95976 241 aa21.33■■□□□ 1.01
VPS28-212ENST00000530836 VASPP50552 380 aaPredicted RBP21.33■■□□□ 1.01
VPS28-212ENST00000530836 SNRPD1P62314 119 aaKnown RBP21.33■■□□□ 1.01
VPS28-212ENST00000530836 ECT2LQ008S8 904 aa21.33■■□□□ 1.01
VPS28-212ENST00000530836 MSLNQ13421 630 aaPredicted RBP21.33■■□□□ 1.01
VPS28-212ENST00000530836 ZNF852Q6ZMS4 543 aa21.33■■□□□ 1.01
VPS28-212ENST00000530836 RASSF3Q86WH2 238 aa21.33■■□□□ 1.01
VPS28-212ENST00000530836 BRSK1Q8TDC3 778 aa21.33■■□□□ 1.01
VPS28-212ENST00000530836 SMYD2Q9NRG4 433 aa21.33■■□□□ 1.01
VPS28-212ENST00000530836 SLC27A6Q9Y2P4 619 aa21.33■■□□□ 1.01
VPS28-212ENST00000530836 RAI2Q9Y5P3 530 aa21.33■■□□□ 1.01
VPS28-212ENST00000530836 GJB3O75712 270 aa21.33■■□□□ 1
VPS28-212ENST00000530836 SNRPAP09012 282 aaKnown RBP21.33■■□□□ 1
VPS28-212ENST00000530836 SRCP12931 536 aa21.33■■□□□ 1
VPS28-212ENST00000530836 POLR2EP19388 210 aaKnown RBP21.33■■□□□ 1
VPS28-212ENST00000530836 NMBRP28336 390 aa21.33■■□□□ 1
VPS28-212ENST00000530836 GYS2P54840 703 aa21.33■■□□□ 1
VPS28-212ENST00000530836 DNAJC3Q13217 504 aa21.33■■□□□ 1
VPS28-212ENST00000530836 ASTLQ6HA08 431 aaPredicted RBP21.33■■□□□ 1
VPS28-212ENST00000530836 KIAA0930Q6ICG6 404 aaPredicted RBP21.33■■□□□ 1
VPS28-212ENST00000530836 TXNDC11Q6PKC3 985 aa21.33■■□□□ 1
VPS28-212ENST00000530836 CES3Q6UWW8 571 aa21.33■■□□□ 1
VPS28-212ENST00000530836 KCNMB4Q86W47 210 aa21.33■■□□□ 1
VPS28-212ENST00000530836 PLPP6Q8IY26 295 aa21.33■■□□□ 1
VPS28-212ENST00000530836 SRRM1Q8IYB3 904 aaKnown RBP21.33■■□□□ 1
VPS28-212ENST00000530836 PCDH20Q8N6Y1 951 aaKnown RBP21.33■■□□□ 1
VPS28-212ENST00000530836 OR2AP1Q8NGE2 309 aa21.33■■□□□ 1
VPS28-212ENST00000530836 FAM3CQ92520 227 aa21.33■■□□□ 1
VPS28-212ENST00000530836 ALKBH8Q96BT7 664 aaKnown RBP21.33■■□□□ 1
VPS28-212ENST00000530836 SMC6Q96SB8 1091 aa21.33■■□□□ 1
VPS28-212ENST00000530836 CPNE1Q99829 537 aa21.33■■□□□ 1
VPS28-212ENST00000530836 SSU72Q9NP77 194 aaKnown RBP21.33■■□□□ 1
VPS28-212ENST00000530836 TREX1Q9NSU2 369 aa21.33■■□□□ 1
VPS28-212ENST00000530836 C20orf96Q9NUD7 363 aaPredicted RBP21.33■■□□□ 1
VPS28-212ENST00000530836 MIA3Q5JRA6 1907 aa21.32■■□□□ 1
VPS28-212ENST00000530836 MROH6A6NGR9 719 aa21.32■■□□□ 1
VPS28-212ENST00000530836 K7ERQ8 282 aa21.32■■□□□ 1
VPS28-212ENST00000530836 SOCS5O75159 536 aa21.32■■□□□ 1
VPS28-212ENST00000530836 FAM155BO75949 473 aa21.32■■□□□ 1
VPS28-212ENST00000530836 GSRP00390 522 aa21.32■■□□□ 1
VPS28-212ENST00000530836 ASLP04424 464 aa21.32■■□□□ 1
VPS28-212ENST00000530836 CD72P21854 359 aa21.32■■□□□ 1
VPS28-212ENST00000530836 NNMTP40261 264 aa21.32■■□□□ 1
VPS28-212ENST00000530836 DGKGP49619 791 aa21.32■■□□□ 1
VPS28-212ENST00000530836 RPL26P61254 145 aaKnown RBP21.32■■□□□ 1
VPS28-212ENST00000530836 GABPB1Q06547 395 aaPredicted RBP21.32■■□□□ 1
VPS28-212ENST00000530836 SEPT6Q14141 434 aa21.32■■□□□ 1
VPS28-212ENST00000530836 GRM3Q14832 879 aa21.32■■□□□ 1
VPS28-212ENST00000530836 TSTD2Q5T7W7 516 aa21.32■■□□□ 1
VPS28-212ENST00000530836 MBLAC2Q68D91 279 aa21.32■■□□□ 1
VPS28-212ENST00000530836 ADIPOR2Q86V24 386 aa21.32■■□□□ 1
VPS28-212ENST00000530836 RMDN1Q96DB5 314 aa21.32■■□□□ 1
VPS28-212ENST00000530836 TUBGCP5Q96RT8 1024 aa21.32■■□□□ 1
VPS28-212ENST00000530836 PSD3Q9NYI0 1048 aa21.32■■□□□ 1
VPS28-212ENST00000530836 RPL26L1Q9UNX3 145 aaKnown RBP21.32■■□□□ 1
VPS28-212ENST00000530836 SLC8A2Q9UPR5 921 aa21.32■■□□□ 1
VPS28-212ENST00000530836 CHKBQ9Y259 395 aa21.32■■□□□ 1
VPS28-212ENST00000530836 TECTAO75443 2155 aa21.31■■□□□ 1
VPS28-212ENST00000530836 F5P12259 2224 aa21.31■■□□□ 1
VPS28-212ENST00000530836 KANSL1LA0AUZ9 987 aa21.31■■□□□ 1
VPS28-212ENST00000530836 SMAD6O43541 496 aaKnown RBP21.31■■□□□ 1
VPS28-212ENST00000530836 CRTAMO95727 393 aa21.31■■□□□ 1
VPS28-212ENST00000530836 ATP5BP06576 529 aaKnown RBP21.31■■□□□ 1
VPS28-212ENST00000530836 ERVK-10P10266 1014 aa21.31■■□□□ 1
VPS28-212ENST00000530836 BRAFP15056 766 aa21.31■■□□□ 1
VPS28-212ENST00000530836 SLC18A1P54219 525 aa21.31■■□□□ 1
VPS28-212ENST00000530836 GRTP1Q5TC63 336 aa21.31■■□□□ 1
VPS28-212ENST00000530836 SRPK1Q96SB4 655 aaKnown RBP21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms