RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 FTCDO95954 541 aa16.5■□□□□ 0.23
SF3A1-209ENST00000496189 PEX11BO96011 259 aa16.5■□□□□ 0.23
SF3A1-209ENST00000496189 CPP00450 1065 aa16.5■□□□□ 0.23
SF3A1-209ENST00000496189 THEGLP0DJG4 465 aa16.5■□□□□ 0.23
SF3A1-209ENST00000496189 TGM2P21980 687 aa16.5■□□□□ 0.23
SF3A1-209ENST00000496189 MARCKSL1P49006 195 aa16.5■□□□□ 0.23
SF3A1-209ENST00000496189 NXPH1P58417 271 aa16.5■□□□□ 0.23
SF3A1-209ENST00000496189 MAXP61244 160 aa16.5■□□□□ 0.23
SF3A1-209ENST00000496189 PPP2R5EQ16537 467 aa16.5■□□□□ 0.23
SF3A1-209ENST00000496189 TAZQ16635 292 aa16.5■□□□□ 0.23
SF3A1-209ENST00000496189 ZNF423Q2M1K9 1284 aa16.5■□□□□ 0.23
SF3A1-209ENST00000496189 PSAPL1Q6NUJ1 521 aa16.5■□□□□ 0.23
SF3A1-209ENST00000496189 PTAR1Q7Z6K3 402 aaPredicted RBP16.5■□□□□ 0.23
SF3A1-209ENST00000496189 PLD5Q8N7P1 536 aa16.5■□□□□ 0.23
SF3A1-209ENST00000496189 P3H4Q92791 437 aa16.5■□□□□ 0.23
SF3A1-209ENST00000496189 ELF4Q99607 663 aaPredicted RBP16.5■□□□□ 0.23
SF3A1-209ENST00000496189 FERMT1Q9BQL6 677 aa16.5■□□□□ 0.23
SF3A1-209ENST00000496189 WRAP53Q9BUR4 548 aaKnown RBP16.5■□□□□ 0.23
SF3A1-209ENST00000496189 C1QTNF2Q9BXJ5 285 aa16.5■□□□□ 0.23
SF3A1-209ENST00000496189 KCNF1Q9H3M0 494 aa16.5■□□□□ 0.23
SF3A1-209ENST00000496189 FZD3Q9NPG1 666 aa16.5■□□□□ 0.23
SF3A1-209ENST00000496189 PCDH12Q9NPG4 1184 aa16.5■□□□□ 0.23
SF3A1-209ENST00000496189 EFR3BQ9Y2G0 817 aa16.5■□□□□ 0.23
SF3A1-209ENST00000496189 FNDC3AQ9Y2H6 1198 aaKnown RBP16.5■□□□□ 0.23
SF3A1-209ENST00000496189 CACNA1EQ15878 2313 aa16.5■□□□□ 0.23
SF3A1-209ENST00000496189 H0Y8X5 98 aa16.49■□□□□ 0.23
SF3A1-209ENST00000496189 TM4SF5O14894 197 aa16.49■□□□□ 0.23
SF3A1-209ENST00000496189 LZTS3O60299 673 aaPredicted RBP16.49■□□□□ 0.23
SF3A1-209ENST00000496189 CST8O60676 142 aa16.49■□□□□ 0.23
SF3A1-209ENST00000496189 MMP20O60882 483 aa16.49■□□□□ 0.23
SF3A1-209ENST00000496189 WNT1P04628 370 aa16.49■□□□□ 0.23
SF3A1-209ENST00000496189 ELFN1P0C7U0 828 aa16.49■□□□□ 0.23
SF3A1-209ENST00000496189 CYP2A6P11509 494 aaPredicted RBP16.49■□□□□ 0.23
SF3A1-209ENST00000496189 MSNP26038 577 aaKnown RBP16.49■□□□□ 0.23
SF3A1-209ENST00000496189 RABIFP47224 123 aa16.49■□□□□ 0.23
SF3A1-209ENST00000496189 EPHB1P54762 984 aa16.49■□□□□ 0.23
SF3A1-209ENST00000496189 BNC1Q01954 994 aa16.49■□□□□ 0.23
SF3A1-209ENST00000496189 PPIDQ08752 370 aaKnown RBP16.49■□□□□ 0.23
SF3A1-209ENST00000496189 TMEM52BQ4KMG9 183 aa16.49■□□□□ 0.23
SF3A1-209ENST00000496189 ARMC12Q5T9G4 340 aa16.49■□□□□ 0.23
SF3A1-209ENST00000496189 NAXDQ8IW45 347 aa16.49■□□□□ 0.23
SF3A1-209ENST00000496189 TEX26Q8N6G2 289 aa16.49■□□□□ 0.23
SF3A1-209ENST00000496189 TMEM145Q8NBT3 493 aa16.49■□□□□ 0.23
SF3A1-209ENST00000496189 DEFB124Q8NES8 71 aa16.49■□□□□ 0.23
SF3A1-209ENST00000496189 MAML1Q92585 1016 aa16.49■□□□□ 0.23
SF3A1-209ENST00000496189 ECHDC3Q96DC8 303 aa16.49■□□□□ 0.23
SF3A1-209ENST00000496189 LENG8Q96PV6 779 aaPredicted RBP16.49■□□□□ 0.23
SF3A1-209ENST00000496189 SEMA3CQ99985 751 aa16.49■□□□□ 0.23
SF3A1-209ENST00000496189 ERVMER34-1Q9H9K5 563 aa16.49■□□□□ 0.23
SF3A1-209ENST00000496189 IL21RQ9HBE5 538 aa16.49■□□□□ 0.23
SF3A1-209ENST00000496189 NOD2Q9HC29 1040 aa16.49■□□□□ 0.23
SF3A1-209ENST00000496189 SEPT10Q9P0V9 454 aa16.49■□□□□ 0.23
SF3A1-209ENST00000496189 GGT7Q9UJ14 662 aa16.49■□□□□ 0.23
SF3A1-209ENST00000496189 PCDHGC4Q9Y5F7 938 aa16.49■□□□□ 0.23
SF3A1-209ENST00000496189 SHROOM3Q8TF72 1996 aa16.49■□□□□ 0.23
SF3A1-209ENST00000496189 hCG_1818297A0A087WSY0 165 aa16.48■□□□□ 0.23
SF3A1-209ENST00000496189 GOLGA6L9A6NEM1 432 aa16.48■□□□□ 0.23
SF3A1-209ENST00000496189 TOR1BO14657 336 aa16.48■□□□□ 0.23
SF3A1-209ENST00000496189 RIOK3O14730 519 aaKnown RBP16.48■□□□□ 0.23
SF3A1-209ENST00000496189 WNT9AO14904 365 aa16.48■□□□□ 0.23
SF3A1-209ENST00000496189 MTSS1O43312 755 aa16.48■□□□□ 0.23
SF3A1-209ENST00000496189 GJB3O75712 270 aa16.48■□□□□ 0.23
SF3A1-209ENST00000496189 ITGAVP06756 1048 aa16.48■□□□□ 0.23
SF3A1-209ENST00000496189 CR2P20023 1033 aa16.48■□□□□ 0.23
SF3A1-209ENST00000496189 MMP12P39900 470 aa16.48■□□□□ 0.23
SF3A1-209ENST00000496189 PEX5P50542 639 aa16.48■□□□□ 0.23
SF3A1-209ENST00000496189 THOP1P52888 689 aa16.48■□□□□ 0.23
SF3A1-209ENST00000496189 RPS6KA1Q15418 735 aa16.48■□□□□ 0.23
SF3A1-209ENST00000496189 HS1BP3Q53T59 392 aa16.48■□□□□ 0.23
SF3A1-209ENST00000496189 KYAT3Q6YP21 454 aaKnown RBP16.48■□□□□ 0.23
SF3A1-209ENST00000496189 USP45Q70EL2 814 aa16.48■□□□□ 0.23
SF3A1-209ENST00000496189 PGBD5Q8N414 524 aa16.48■□□□□ 0.23
SF3A1-209ENST00000496189 HES6Q96HZ4 224 aa16.48■□□□□ 0.23
SF3A1-209ENST00000496189 LGMNQ99538 433 aa16.48■□□□□ 0.23
SF3A1-209ENST00000496189 KCTD5Q9NXV2 234 aa16.48■□□□□ 0.23
SF3A1-209ENST00000496189 PHTF1Q9UMS5 762 aa16.48■□□□□ 0.23
SF3A1-209ENST00000496189 LAMA1P25391 3075 aa16.47■□□□□ 0.23
SF3A1-209ENST00000496189 A0A1B0GTQ1 180 aa16.47■□□□□ 0.23
SF3A1-209ENST00000496189 CFAP69A5D8W1 941 aa16.47■□□□□ 0.23
SF3A1-209ENST00000496189 TRAFD1O14545 582 aaPredicted RBP16.47■□□□□ 0.23
SF3A1-209ENST00000496189 KCNK3O14649 394 aa16.47■□□□□ 0.23
SF3A1-209ENST00000496189 HTRA2O43464 458 aaPredicted RBP16.47■□□□□ 0.23
SF3A1-209ENST00000496189 PCDHGA12O60330 932 aa16.47■□□□□ 0.23
SF3A1-209ENST00000496189 TJP3O95049 919 aa16.47■□□□□ 0.23
SF3A1-209ENST00000496189 JCHAINP01591 159 aa16.47■□□□□ 0.23
SF3A1-209ENST00000496189 CD59P13987 128 aa16.47■□□□□ 0.23
SF3A1-209ENST00000496189 PTPN7P35236 360 aa16.47■□□□□ 0.23
SF3A1-209ENST00000496189 GRK6P43250 576 aa16.47■□□□□ 0.23
SF3A1-209ENST00000496189 TNNT3P45378 269 aaPredicted RBP16.47■□□□□ 0.23
SF3A1-209ENST00000496189 LIG3P49916 1009 aa16.47■□□□□ 0.23
SF3A1-209ENST00000496189 SLC10A2Q12908 348 aaPredicted RBP16.47■□□□□ 0.23
SF3A1-209ENST00000496189 ARHGEF7Q14155 803 aa16.47■□□□□ 0.23
SF3A1-209ENST00000496189 PTK2BQ14289 1009 aa16.47■□□□□ 0.23
SF3A1-209ENST00000496189 LRRC14Q15048 493 aa16.47■□□□□ 0.23
SF3A1-209ENST00000496189 GCNT7Q6ZNI0 430 aa16.47■□□□□ 0.23
SF3A1-209ENST00000496189 Q6ZSR6 202 aa16.47■□□□□ 0.23
SF3A1-209ENST00000496189 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.47■□□□□ 0.23
SF3A1-209ENST00000496189 RHBDD1Q8TEB9 315 aa16.47■□□□□ 0.23
SF3A1-209ENST00000496189 TFB1MQ8WVM0 346 aaKnown RBP16.47■□□□□ 0.23
SF3A1-209ENST00000496189 CDC6Q99741 560 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 206.2 ms