RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 LYSMD4Q5XG99 296 aa17.22■□□□□ 0.35
HDAC6-235ENST00000495515 LAIR1Q6GTX8 287 aa17.22■□□□□ 0.35
HDAC6-235ENST00000495515 KIAA1161Q6NSJ0 714 aa17.22■□□□□ 0.35
HDAC6-235ENST00000495515 C4orf22Q6V702 233 aa17.22■□□□□ 0.35
HDAC6-235ENST00000495515 USP45Q70EL2 814 aa17.22■□□□□ 0.35
HDAC6-235ENST00000495515 TRIM69Q86WT6 500 aa17.22■□□□□ 0.35
HDAC6-235ENST00000495515 CREG2Q8IUH2 290 aa17.22■□□□□ 0.35
HDAC6-235ENST00000495515 C12orf50Q8NA57 414 aaPredicted RBP17.22■□□□□ 0.35
HDAC6-235ENST00000495515 ATL2Q8NHH9 583 aa17.22■□□□□ 0.35
HDAC6-235ENST00000495515 SPATA22Q8NHS9 363 aa17.22■□□□□ 0.35
HDAC6-235ENST00000495515 TADA1Q96BN2 335 aa17.22■□□□□ 0.35
HDAC6-235ENST00000495515 HSPA12BQ96MM6 686 aa17.22■□□□□ 0.35
HDAC6-235ENST00000495515 C6orf106Q9H6K1 298 aaPredicted RBP17.22■□□□□ 0.35
HDAC6-235ENST00000495515 PCDH12Q9NPG4 1184 aa17.22■□□□□ 0.35
HDAC6-235ENST00000495515 CHKBQ9Y259 395 aa17.22■□□□□ 0.35
HDAC6-235ENST00000495515 RIOK3O14730 519 aaKnown RBP17.21■□□□□ 0.35
HDAC6-235ENST00000495515 FZD6O60353 706 aa17.21■□□□□ 0.35
HDAC6-235ENST00000495515 RNGTTO60942 597 aaKnown RBP17.21■□□□□ 0.35
HDAC6-235ENST00000495515 PMPCBO75439 489 aa17.21■□□□□ 0.35
HDAC6-235ENST00000495515 MT-CYBP00156 380 aaPredicted RBP17.21■□□□□ 0.35
HDAC6-235ENST00000495515 EPOP01588 193 aa17.21■□□□□ 0.35
HDAC6-235ENST00000495515 GDF10P55107 478 aa17.21■□□□□ 0.35
HDAC6-235ENST00000495515 RPS21P63220 83 aaKnown RBP17.21■□□□□ 0.35
HDAC6-235ENST00000495515 FAM193AP78312 1265 aa17.21■□□□□ 0.35
HDAC6-235ENST00000495515 CDK18Q07002 472 aa17.21■□□□□ 0.35
HDAC6-235ENST00000495515 LPAL2Q16609 132 aa17.21■□□□□ 0.35
HDAC6-235ENST00000495515 CYP1B1Q16678 543 aa17.21■□□□□ 0.35
HDAC6-235ENST00000495515 HORMAD1Q86X24 394 aa17.21■□□□□ 0.35
HDAC6-235ENST00000495515 ZSWIM9Q86XI8 627 aa17.21■□□□□ 0.35
HDAC6-235ENST00000495515 RGL4Q8IZJ4 473 aa17.21■□□□□ 0.35
HDAC6-235ENST00000495515 DEFB119Q8N690 84 aa17.21■□□□□ 0.35
HDAC6-235ENST00000495515 CXorf40AQ8TE69 158 aa17.21■□□□□ 0.35
HDAC6-235ENST00000495515 GRK7Q8WTQ7 553 aa17.21■□□□□ 0.35
HDAC6-235ENST00000495515 SNX19Q92543 992 aa17.21■□□□□ 0.35
HDAC6-235ENST00000495515 FSD1LQ9BXM9 530 aa17.21■□□□□ 0.35
HDAC6-235ENST00000495515 SMARCAL1Q9NZC9 954 aa17.21■□□□□ 0.35
HDAC6-235ENST00000495515 PAK5Q9P286 719 aa17.21■□□□□ 0.35
HDAC6-235ENST00000495515 GMEB2Q9UKD1 530 aa17.21■□□□□ 0.35
HDAC6-235ENST00000495515 ZBTB32Q9Y2Y4 487 aaPredicted RBP17.21■□□□□ 0.35
HDAC6-235ENST00000495515 PCDHGA5Q9Y5G8 931 aa17.21■□□□□ 0.35
HDAC6-235ENST00000495515 A0A1W2PQU0 124 aa17.2■□□□□ 0.34
HDAC6-235ENST00000495515 PROB1E7EW31 1015 aa17.2■□□□□ 0.34
HDAC6-235ENST00000495515 FANCGO15287 622 aa17.2■□□□□ 0.34
HDAC6-235ENST00000495515 PSMD3O43242 534 aa17.2■□□□□ 0.34
HDAC6-235ENST00000495515 PHF2O75151 1096 aa17.2■□□□□ 0.34
HDAC6-235ENST00000495515 PSMB4P28070 264 aa17.2■□□□□ 0.34
HDAC6-235ENST00000495515 PTGER3P43115 390 aa17.2■□□□□ 0.34
HDAC6-235ENST00000495515 GRIA4P48058 902 aa17.2■□□□□ 0.34
HDAC6-235ENST00000495515 FNTAP49354 379 aa17.2■□□□□ 0.34
HDAC6-235ENST00000495515 WNT3AP56704 352 aa17.2■□□□□ 0.34
HDAC6-235ENST00000495515 PCSK7Q16549 785 aa17.2■□□□□ 0.34
HDAC6-235ENST00000495515 TMEM52BQ4KMG9 183 aa17.2■□□□□ 0.34
HDAC6-235ENST00000495515 SETMARQ53H47 684 aaPredicted RBP17.2■□□□□ 0.34
HDAC6-235ENST00000495515 LRRC73Q5JTD7 316 aa17.2■□□□□ 0.34
HDAC6-235ENST00000495515 ARMCX6Q7L4S7 300 aa17.2■□□□□ 0.34
HDAC6-235ENST00000495515 CYP2U1Q7Z449 544 aa17.2■□□□□ 0.34
HDAC6-235ENST00000495515 LPCAT1Q8NF37 534 aa17.2■□□□□ 0.34
HDAC6-235ENST00000495515 PIH1D2Q8WWB5 315 aa17.2■□□□□ 0.34
HDAC6-235ENST00000495515 BIRC7Q96CA5 298 aa17.2■□□□□ 0.34
HDAC6-235ENST00000495515 RMDN1Q96DB5 314 aa17.2■□□□□ 0.34
HDAC6-235ENST00000495515 SCRN2Q96FV2 425 aa17.2■□□□□ 0.34
HDAC6-235ENST00000495515 SRPK1Q96SB4 655 aaKnown RBP17.2■□□□□ 0.34
HDAC6-235ENST00000495515 UBP1Q9NZI7 540 aa17.2■□□□□ 0.34
HDAC6-235ENST00000495515 PPIL1Q9Y3C6 166 aa17.2■□□□□ 0.34
HDAC6-235ENST00000495515 F5H423 210 aaPredicted RBP17.19■□□□□ 0.34
HDAC6-235ENST00000495515 CCDC188H7C350 402 aa17.19■□□□□ 0.34
HDAC6-235ENST00000495515 NDST3O95803 873 aa17.19■□□□□ 0.34
HDAC6-235ENST00000495515 PDHA1P08559 390 aa17.19■□□□□ 0.34
HDAC6-235ENST00000495515 GNSP15586 552 aa17.19■□□□□ 0.34
HDAC6-235ENST00000495515 CD27P26842 260 aa17.19■□□□□ 0.34
HDAC6-235ENST00000495515 HOXD12P35452 270 aa17.19■□□□□ 0.34
HDAC6-235ENST00000495515 FDFT1P37268 417 aa17.19■□□□□ 0.34
HDAC6-235ENST00000495515 COILP38432 576 aaPredicted RBP17.19■□□□□ 0.34
HDAC6-235ENST00000495515 MMP12P39900 470 aa17.19■□□□□ 0.34
HDAC6-235ENST00000495515 KCNJ1P48048 391 aa17.19■□□□□ 0.34
HDAC6-235ENST00000495515 CREB5Q02930 508 aa17.19■□□□□ 0.34
HDAC6-235ENST00000495515 SGCGQ13326 291 aa17.19■□□□□ 0.34
HDAC6-235ENST00000495515 ARHGEF7Q14155 803 aa17.19■□□□□ 0.34
HDAC6-235ENST00000495515 IHHQ14623 411 aa17.19■□□□□ 0.34
HDAC6-235ENST00000495515 FAM182AQ5T1J6 154 aa17.19■□□□□ 0.34
HDAC6-235ENST00000495515 CCDC137Q6PK04 289 aaKnown RBP17.19■□□□□ 0.34
HDAC6-235ENST00000495515 KDELC1Q6UW63 502 aa17.19■□□□□ 0.34
HDAC6-235ENST00000495515 DPPA4Q7L190 304 aa17.19■□□□□ 0.34
HDAC6-235ENST00000495515 RABEPKQ7Z6M1 372 aa17.19■□□□□ 0.34
HDAC6-235ENST00000495515 SLC41A1Q8IVJ1 513 aa17.19■□□□□ 0.34
HDAC6-235ENST00000495515 SUMF1Q8NBK3 374 aa17.19■□□□□ 0.34
HDAC6-235ENST00000495515 IPMKQ8NFU5 416 aa17.19■□□□□ 0.34
HDAC6-235ENST00000495515 DNASE2BQ8WZ79 361 aa17.19■□□□□ 0.34
HDAC6-235ENST00000495515 ZNF592Q92610 1267 aa17.19■□□□□ 0.34
HDAC6-235ENST00000495515 OXNAD1Q96HP4 312 aaPredicted RBP17.19■□□□□ 0.34
HDAC6-235ENST00000495515 RUNDC3BQ96NL0 473 aa17.19■□□□□ 0.34
HDAC6-235ENST00000495515 MCCC1Q96RQ3 725 aaPredicted RBP17.19■□□□□ 0.34
HDAC6-235ENST00000495515 MLPHQ9BV36 600 aaPredicted RBP17.19■□□□□ 0.34
HDAC6-235ENST00000495515 C1QTNF7Q9BXJ2 289 aa17.19■□□□□ 0.34
HDAC6-235ENST00000495515 SUSD2Q9UGT4 822 aa17.19■□□□□ 0.34
HDAC6-235ENST00000495515 DMTF1Q9Y222 760 aa17.19■□□□□ 0.34
HDAC6-235ENST00000495515 ITM2BQ9Y287 266 aa17.19■□□□□ 0.34
HDAC6-235ENST00000495515 A0A0J9YYE9 177 aa17.18■□□□□ 0.34
HDAC6-235ENST00000495515 ERI2A8K979 691 aaKnown RBP17.18■□□□□ 0.34
HDAC6-235ENST00000495515 ANKRD66B4E2M5 251 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms