RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 SNX15Q9NRS6 342 aa16.4■□□□□ 0.22
CCDC88B-209ENST00000494080 LTBP3Q9NS15 1303 aa16.39■□□□□ 0.21
CCDC88B-209ENST00000494080 ARL5CA6NH57 179 aa16.39■□□□□ 0.21
CCDC88B-209ENST00000494080 OAS1P00973 400 aaKnown RBP16.39■□□□□ 0.21
CCDC88B-209ENST00000494080 MPSTP25325 297 aa16.39■□□□□ 0.21
CCDC88B-209ENST00000494080 FMO4P31512 558 aa16.39■□□□□ 0.21
CCDC88B-209ENST00000494080 CCNG1P51959 295 aa16.39■□□□□ 0.21
CCDC88B-209ENST00000494080 RALGDSQ12967 914 aa16.39■□□□□ 0.21
CCDC88B-209ENST00000494080 NOGQ13253 232 aa16.39■□□□□ 0.21
CCDC88B-209ENST00000494080 OTOP3Q7RTS5 596 aa16.39■□□□□ 0.21
CCDC88B-209ENST00000494080 DENND1CQ8IV53 801 aa16.39■□□□□ 0.21
CCDC88B-209ENST00000494080 MCRS1Q96EZ8 462 aa16.39■□□□□ 0.21
CCDC88B-209ENST00000494080 UROC1Q96N76 676 aa16.39■□□□□ 0.21
CCDC88B-209ENST00000494080 TAS2R13Q9NYV9 303 aa16.39■□□□□ 0.21
CCDC88B-209ENST00000494080 EGFL7Q9UHF1 273 aa16.39■□□□□ 0.21
CCDC88B-209ENST00000494080 PRRC2BQ5JSZ5 2229 aaKnown RBP16.39■□□□□ 0.21
CCDC88B-209ENST00000494080 TMEM247A6NEH6 219 aa16.39■□□□□ 0.21
CCDC88B-209ENST00000494080 PTPN9P43378 593 aa16.39■□□□□ 0.21
CCDC88B-209ENST00000494080 PPP3CCP48454 512 aa16.39■□□□□ 0.21
CCDC88B-209ENST00000494080 DGUOKQ16854 277 aa16.39■□□□□ 0.21
CCDC88B-209ENST00000494080 HORMAD1Q86X24 394 aa16.39■□□□□ 0.21
CCDC88B-209ENST00000494080 DQX1Q8TE96 717 aaKnown RBP16.39■□□□□ 0.21
CCDC88B-209ENST00000494080 HNRNPABQ99729 332 aaKnown RBP16.39■□□□□ 0.21
CCDC88B-209ENST00000494080 CEP44Q9C0F1 390 aa16.39■□□□□ 0.21
CCDC88B-209ENST00000494080 EPB41L4BQ9H329 900 aa16.39■□□□□ 0.21
CCDC88B-209ENST00000494080 POMKQ9H5K3 350 aa16.39■□□□□ 0.21
CCDC88B-209ENST00000494080 SIX4Q9UIU6 781 aa16.39■□□□□ 0.21
CCDC88B-209ENST00000494080 MYO9BQ13459 2157 aa16.39■□□□□ 0.21
CCDC88B-209ENST00000494080 ATP6AP2A0A1C7CYW4 349 aa16.39■□□□□ 0.21
CCDC88B-209ENST00000494080 CNOT3O75175 753 aaKnown RBP16.39■□□□□ 0.21
CCDC88B-209ENST00000494080 ATP6AP2O75787 350 aa16.39■□□□□ 0.21
CCDC88B-209ENST00000494080 LRRC8DQ7L1W4 858 aa16.39■□□□□ 0.21
CCDC88B-209ENST00000494080 TREML1Q86YW5 311 aa16.39■□□□□ 0.21
CCDC88B-209ENST00000494080 CFAP52Q8N1V2 620 aa16.39■□□□□ 0.21
CCDC88B-209ENST00000494080 ALG9Q9H6U8 611 aa16.39■□□□□ 0.21
CCDC88B-209ENST00000494080 MID1IP1Q9NPA3 183 aa16.39■□□□□ 0.21
CCDC88B-209ENST00000494080 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.39■□□□□ 0.21
CCDC88B-209ENST00000494080 A0A1W2PQH9 124 aa16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 TRAFD1O14545 582 aaPredicted RBP16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 LRIG2O94898 1065 aa16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 ATG7O95352 703 aa16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 SNRPB2P08579 225 aaKnown RBP16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 SLC7A2P52569 658 aa16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 PRKAA2P54646 552 aa16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 FRG1Q14331 258 aaKnown RBP16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 MON1AQ86VX9 555 aa16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 OR7A2PQ8NGA2 310 aa16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 REXO4Q9GZR2 422 aaKnown RBP16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 ABCB10Q9NRK6 738 aa16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 KATNA1O75449 491 aa16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 ALOX12P18054 663 aa16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 TSPAN8P19075 237 aa16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 WNT3AP56704 352 aa16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 GAD2Q05329 585 aa16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 ADGRE1Q14246 886 aa16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 TEX44Q53QW1 395 aa16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 BROXQ5VW32 411 aa16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 EFL1Q7Z2Z2 1120 aaKnown RBP16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 OR8H2Q8N162 312 aa16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 FBXO39Q8N4B4 442 aa16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 CDK5RAP1Q96SZ6 601 aaKnown RBP16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 GPATCH1Q9BRR8 931 aaKnown RBP16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 TUBA8Q9NY65 449 aaPredicted RBP16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 FBXO5Q9UKT4 447 aa16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 PCDHB12Q9Y5F1 795 aa16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 URB1O60287 2271 aaKnown RBP16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 OR1D2P34982 312 aa16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 GPX6P59796 221 aa16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 TAF10Q12962 218 aa16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 LSAMPQ13449 338 aa16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 NAB1Q13506 487 aa16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 PLCL1Q15111 1095 aa16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 TARBP2Q15633 366 aaKnown RBP16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 ATP6AP1LQ52LC2 224 aa16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 HECTD3Q5T447 861 aa16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 SDCBP2Q9H190 292 aa16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 BCLAF3A2AJT9 711 aaKnown RBP16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 TYROBPO43914 113 aa16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 IDH3AP50213 366 aa16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 RBBP8Q99708 897 aa16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 COQ7Q99807 217 aa16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 CHRAC1Q9NRG0 131 aa16.38■□□□□ 0.21
CCDC88B-209ENST00000494080 DLDP09622 509 aaKnown RBP16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 PABPC4LP0CB38 370 aaKnown RBP16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 GM2AP17900 193 aa16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 KLRC2P26717 231 aa16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 GRK4P32298 578 aa16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 KRR1Q13601 381 aaKnown RBP16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 GALNT18Q6P9A2 607 aa16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 SLC22A9Q8IVM8 553 aa16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 BPIFB6Q8NFQ5 453 aa16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 DCAKDQ8WVC6 231 aa16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 PPP1R14BQ96C90 147 aa16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 MFSD3Q96ES6 412 aa16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 PRR11Q96HE9 360 aaPredicted RBP16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 UXTQ9UBK9 157 aaPredicted RBP16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 DHRS12A0PJE2 317 aa16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 BTN3A1O00481 513 aa16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 PLIN3O60664 434 aa16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 T-ENOLP0DO92 83 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms