RNA–Protein interactions for RNA: ENST00000493940.2

HSPG2-212, Transcript of heparan sulfate proteoglycan 2, humanhuman

TSL 5

Gene HSPG2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2-212ENST00000493940 PROSER1Q86XN7 944 aa12.71□□□□□ -0.37
HSPG2-212ENST00000493940 OXR1Q8N573 874 aa12.71□□□□□ -0.37
HSPG2-212ENST00000493940 PQLC3Q8N755 202 aa12.71□□□□□ -0.37
HSPG2-212ENST00000493940 IQCDQ96DY2 449 aa12.71□□□□□ -0.37
HSPG2-212ENST00000493940 PSKH2Q96QS6 385 aa12.71□□□□□ -0.37
HSPG2-212ENST00000493940 CINPQ9BW66 212 aaPredicted RBP12.71□□□□□ -0.37
HSPG2-212ENST00000493940 NOD2Q9HC29 1040 aa12.71□□□□□ -0.37
HSPG2-212ENST00000493940 ABHD10Q9NUJ1 306 aa12.71□□□□□ -0.37
HSPG2-212ENST00000493940 DNAJC28Q9NX36 388 aa12.71□□□□□ -0.37
HSPG2-212ENST00000493940 TRABD2BA6NFA1 517 aa12.7□□□□□ -0.38
HSPG2-212ENST00000493940 K7ESM1 405 aa12.7□□□□□ -0.38
HSPG2-212ENST00000493940 SCAMP1O15126 338 aa12.7□□□□□ -0.38
HSPG2-212ENST00000493940 YKT6O15498 198 aa12.7□□□□□ -0.38
HSPG2-212ENST00000493940 MFSD11O43934 449 aa12.7□□□□□ -0.38
HSPG2-212ENST00000493940 MFAP3LO75121 409 aa12.7□□□□□ -0.38
HSPG2-212ENST00000493940 CSF2P04141 144 aa12.7□□□□□ -0.38
HSPG2-212ENST00000493940 CKMT2P17540 419 aa12.7□□□□□ -0.38
HSPG2-212ENST00000493940 GJC1P36383 396 aa12.7□□□□□ -0.38
HSPG2-212ENST00000493940 ARL4AP40617 200 aa12.7□□□□□ -0.38
HSPG2-212ENST00000493940 LIG3P49916 1009 aa12.7□□□□□ -0.38
HSPG2-212ENST00000493940 TMCO3Q6UWJ1 677 aa12.7□□□□□ -0.38
HSPG2-212ENST00000493940 LIPIQ6XZB0 460 aa12.7□□□□□ -0.38
HSPG2-212ENST00000493940 LZTR1Q8N653 840 aa12.7□□□□□ -0.38
HSPG2-212ENST00000493940 OR4C6Q8NH72 309 aa12.7□□□□□ -0.38
HSPG2-212ENST00000493940 SLC35G2Q8TBE7 412 aa12.7□□□□□ -0.38
HSPG2-212ENST00000493940 HCAR2Q8TDS4 363 aa12.7□□□□□ -0.38
HSPG2-212ENST00000493940 CXorf40AQ8TE69 158 aa12.7□□□□□ -0.38
HSPG2-212ENST00000493940 RAPGEF5Q92565 580 aa12.7□□□□□ -0.38
HSPG2-212ENST00000493940 ZNF641Q96N77 438 aaPredicted RBP12.7□□□□□ -0.38
HSPG2-212ENST00000493940 NCAPGQ9BPX3 1015 aa12.7□□□□□ -0.38
HSPG2-212ENST00000493940 CLPBQ9H078 707 aa12.7□□□□□ -0.38
HSPG2-212ENST00000493940 CTTNBP2NLQ9P2B4 639 aa12.7□□□□□ -0.38
HSPG2-212ENST00000493940 TFR2Q9UP52 801 aa12.7□□□□□ -0.38
HSPG2-212ENST00000493940 LOC400499M0QZD8 3231 aa12.69□□□□□ -0.38
HSPG2-212ENST00000493940 SSU72P8A0A1W2PR75 194 aa12.69□□□□□ -0.38
HSPG2-212ENST00000493940 C3orf70A6NLC5 250 aaPredicted RBP12.69□□□□□ -0.38
HSPG2-212ENST00000493940 TMEM110-MUSTN1A8MSY1 372 aa12.69□□□□□ -0.38
HSPG2-212ENST00000493940 HTRA2O43464 458 aaPredicted RBP12.69□□□□□ -0.38
HSPG2-212ENST00000493940 RFPL3O75679 317 aa12.69□□□□□ -0.38
HSPG2-212ENST00000493940 H2AFZP0C0S5 128 aa12.69□□□□□ -0.38
HSPG2-212ENST00000493940 NME1P15531 152 aaKnown RBP12.69□□□□□ -0.38
HSPG2-212ENST00000493940 JUNDP17535 347 aa12.69□□□□□ -0.38
HSPG2-212ENST00000493940 ACP1P24666 158 aa12.69□□□□□ -0.38
HSPG2-212ENST00000493940 SSR1P43307 286 aaKnown RBP12.69□□□□□ -0.38
HSPG2-212ENST00000493940 RABIFP47224 123 aa12.69□□□□□ -0.38
HSPG2-212ENST00000493940 ZNF135P52742 658 aaPredicted RBP12.69□□□□□ -0.38
HSPG2-212ENST00000493940 INSM1Q01101 510 aaPredicted RBP12.69□□□□□ -0.38
HSPG2-212ENST00000493940 TRAF2Q12933 501 aa12.69□□□□□ -0.38
HSPG2-212ENST00000493940 ZNF211Q13398 564 aaPredicted RBP12.69□□□□□ -0.38
HSPG2-212ENST00000493940 INPP5AQ14642 412 aa12.69□□□□□ -0.38
HSPG2-212ENST00000493940 MESDQ14696 234 aa12.69□□□□□ -0.38
HSPG2-212ENST00000493940 RFTN1Q14699 578 aaPredicted RBP12.69□□□□□ -0.38
HSPG2-212ENST00000493940 PAFAH1B3Q15102 231 aaKnown RBP12.69□□□□□ -0.38
HSPG2-212ENST00000493940 ANKRD20A8PQ5CZ79 823 aa12.69□□□□□ -0.38
HSPG2-212ENST00000493940 TMCO4Q5TGY1 634 aa12.69□□□□□ -0.38
HSPG2-212ENST00000493940 RFLNAQ6ZTI6 216 aa12.69□□□□□ -0.38
HSPG2-212ENST00000493940 H2AFVQ71UI9 128 aa12.69□□□□□ -0.38
HSPG2-212ENST00000493940 DCP2Q8IU60 420 aaKnown RBP12.69□□□□□ -0.38
HSPG2-212ENST00000493940 CBARPQ8N350 705 aaPredicted RBP12.69□□□□□ -0.38
HSPG2-212ENST00000493940 TEX26Q8N6G2 289 aa12.69□□□□□ -0.38
HSPG2-212ENST00000493940 DENND6BQ8NEG7 585 aa12.69□□□□□ -0.38
HSPG2-212ENST00000493940 ZNF548Q8NEK5 533 aaPredicted RBP12.69□□□□□ -0.38
HSPG2-212ENST00000493940 TSACCQ96A04 125 aaPredicted RBP12.69□□□□□ -0.38
HSPG2-212ENST00000493940 IFT43Q96FT9 208 aa12.69□□□□□ -0.38
HSPG2-212ENST00000493940 APOLD1Q96LR9 279 aa12.69□□□□□ -0.38
HSPG2-212ENST00000493940 TUBGCP5Q96RT8 1024 aa12.69□□□□□ -0.38
HSPG2-212ENST00000493940 ATP13A3Q9H7F0 1226 aa12.69□□□□□ -0.38
HSPG2-212ENST00000493940 NHEJ1Q9H9Q4 299 aaPredicted RBP12.69□□□□□ -0.38
HSPG2-212ENST00000493940 SEPT3Q9UH03 358 aa12.69□□□□□ -0.38
HSPG2-212ENST00000493940 ATP8A1Q9Y2Q0 1164 aa12.69□□□□□ -0.38
HSPG2-212ENST00000493940 GPSM3Q9Y4H4 160 aa12.69□□□□□ -0.38
HSPG2-212ENST00000493940 HYOU1Q9Y4L1 999 aa12.69□□□□□ -0.38
HSPG2-212ENST00000493940 OR1A2Q9Y585 309 aa12.69□□□□□ -0.38
HSPG2-212ENST00000493940 PCDHGA1Q9Y5H4 931 aa12.69□□□□□ -0.38
HSPG2-212ENST00000493940 FASNP49327 2511 aaKnown RBP12.69□□□□□ -0.38
HSPG2-212ENST00000493940 SCN8AQ9UQD0 1980 aa12.69□□□□□ -0.38
HSPG2-212ENST00000493940 PDHA1P08559 390 aa12.68□□□□□ -0.38
HSPG2-212ENST00000493940 TMEM253P0C7T8 217 aa12.68□□□□□ -0.38
HSPG2-212ENST00000493940 KDELR1P24390 212 aa12.68□□□□□ -0.38
HSPG2-212ENST00000493940 GBE1Q04446 702 aa12.68□□□□□ -0.38
HSPG2-212ENST00000493940 BCL2L1Q07817 233 aa12.68□□□□□ -0.38
HSPG2-212ENST00000493940 CYP4F3Q08477 520 aa12.68□□□□□ -0.38
HSPG2-212ENST00000493940 TARDBPQ13148 414 aaKnown RBP eCLIP12.68□□□□□ -0.38
HSPG2-212ENST00000493940 KRT81Q14533 505 aa12.68□□□□□ -0.38
HSPG2-212ENST00000493940 TCEA2Q15560 299 aa12.68□□□□□ -0.38
HSPG2-212ENST00000493940 DEFB133Q30KQ1 61 aa12.68□□□□□ -0.38
HSPG2-212ENST00000493940 INAVAQ3KP66 663 aa12.68□□□□□ -0.38
HSPG2-212ENST00000493940 HES3Q5TGS1 186 aa12.68□□□□□ -0.38
HSPG2-212ENST00000493940 BRAT1Q6PJG6 821 aa12.68□□□□□ -0.38
HSPG2-212ENST00000493940 PARGQ86W56 976 aa12.68□□□□□ -0.38
HSPG2-212ENST00000493940 SFTPA2Q8IWL1 248 aa12.68□□□□□ -0.38
HSPG2-212ENST00000493940 TC2NQ8N9U0 490 aa12.68□□□□□ -0.38
HSPG2-212ENST00000493940 LMX1AQ8TE12 382 aa12.68□□□□□ -0.38
HSPG2-212ENST00000493940 FAF2Q96CS3 445 aa12.68□□□□□ -0.38
HSPG2-212ENST00000493940 ZNF599Q96NL3 588 aa12.68□□□□□ -0.38
HSPG2-212ENST00000493940 NUDCD1Q96RS6 583 aa12.68□□□□□ -0.38
HSPG2-212ENST00000493940 MGME1Q9BQP7 344 aa12.68□□□□□ -0.38
HSPG2-212ENST00000493940 APOOQ9BUR5 198 aa12.68□□□□□ -0.38
HSPG2-212ENST00000493940 LGR4Q9BXB1 951 aa12.68□□□□□ -0.38
HSPG2-212ENST00000493940 DONSONQ9NYP3 566 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms