RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 RNPEPL1Q9HAU8 725 aa21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 ILVBLA1L0T0 632 aa21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 RHOCP08134 193 aa21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 EZRP15311 586 aaKnown RBP21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 LAMB3Q13751 1172 aa21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 TAF12Q16514 161 aa21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 SLC9B1Q4ZJI4 515 aa21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 ARL13AQ5H913 290 aaPredicted RBP21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 ADGRF1Q5T601 910 aa21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 HECTD2Q5U5R9 776 aa21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 SPNS2Q8IVW8 549 aa21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 AGR3Q8TD06 166 aa21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 TOP1MTQ969P6 601 aa21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 ZNF689Q96CS4 500 aaPredicted RBP21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 TSPAN17Q96FV3 270 aa21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 TMEM169Q96HH4 297 aa21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 DNAJC1Q96KC8 554 aaKnown RBP21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 TBATAQ96M53 351 aa21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 NSMCE3Q96MG7 304 aa21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 EBF2Q9HAK2 575 aa21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 NKX1-2Q9UD57 310 aaPredicted RBP21.22■□□□□ 0.99
CCDC88B-208ENST00000492980 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP21.21■□□□□ 0.99
CCDC88B-208ENST00000492980 ENTPD5O75356 428 aa21.21■□□□□ 0.99
CCDC88B-208ENST00000492980 PIGNO95427 931 aa21.21■□□□□ 0.99
CCDC88B-208ENST00000492980 NDST3O95803 873 aa21.21■□□□□ 0.99
CCDC88B-208ENST00000492980 ZNF177Q13360 481 aaPredicted RBP21.21■□□□□ 0.99
CCDC88B-208ENST00000492980 CSHL1Q14406 222 aa21.21■□□□□ 0.99
CCDC88B-208ENST00000492980 TMC7Q7Z402 723 aa21.21■□□□□ 0.99
CCDC88B-208ENST00000492980 BRSK1Q8TDC3 778 aa21.21■□□□□ 0.99
CCDC88B-208ENST00000492980 SUDS3Q9H7L9 328 aaPredicted RBP21.21■□□□□ 0.99
CCDC88B-208ENST00000492980 PLA2G4CQ9UP65 541 aa21.21■□□□□ 0.99
CCDC88B-208ENST00000492980 EPB41L3Q9Y2J2 1087 aaPredicted RBP21.21■□□□□ 0.99
CCDC88B-208ENST00000492980 PLXNA4Q9HCM2 1894 aa21.21■□□□□ 0.99
CCDC88B-208ENST00000492980 A0A1B0GVM2 712 aa21.2■□□□□ 0.98
CCDC88B-208ENST00000492980 TCAF2A6NFQ2 919 aa21.2■□□□□ 0.98
CCDC88B-208ENST00000492980 MATN2O00339 956 aa21.2■□□□□ 0.98
CCDC88B-208ENST00000492980 BUD23O43709 281 aaKnown RBP21.2■□□□□ 0.98
CCDC88B-208ENST00000492980 TSPAN3O60637 253 aa21.2■□□□□ 0.98
CCDC88B-208ENST00000492980 PIRTP0C851 137 aa21.2■□□□□ 0.98
CCDC88B-208ENST00000492980 PGM1P36871 562 aa21.2■□□□□ 0.98
CCDC88B-208ENST00000492980 PTPRCAPQ14761 206 aa21.2■□□□□ 0.98
CCDC88B-208ENST00000492980 VEPH1Q14D04 833 aa21.2■□□□□ 0.98
CCDC88B-208ENST00000492980 TECRLQ5HYJ1 363 aa21.2■□□□□ 0.98
CCDC88B-208ENST00000492980 SETD3Q86TU7 594 aaPredicted RBP21.2■□□□□ 0.98
CCDC88B-208ENST00000492980 LSMEM2Q8N112 164 aa21.2■□□□□ 0.98
CCDC88B-208ENST00000492980 TXNDC5Q8NBS9 432 aaKnown RBP21.2■□□□□ 0.98
CCDC88B-208ENST00000492980 NUDCD1Q96RS6 583 aa21.2■□□□□ 0.98
CCDC88B-208ENST00000492980 RC3H2Q9HBD1 1191 aaKnown RBP21.2■□□□□ 0.98
CCDC88B-208ENST00000492980 NOP53Q9NZM5 478 aaKnown RBP21.2■□□□□ 0.98
CCDC88B-208ENST00000492980 TBC1D30Q9Y2I9 924 aa21.2■□□□□ 0.98
CCDC88B-208ENST00000492980 GOT2P00505 430 aaKnown RBP21.2■□□□□ 0.98
CCDC88B-208ENST00000492980 CR2P20023 1033 aa21.2■□□□□ 0.98
CCDC88B-208ENST00000492980 RPL14P50914 215 aaKnown RBP21.2■□□□□ 0.98
CCDC88B-208ENST00000492980 TWF1Q12792 350 aa21.2■□□□□ 0.98
CCDC88B-208ENST00000492980 PRKAA1Q13131 559 aa21.2■□□□□ 0.98
CCDC88B-208ENST00000492980 RAB33AQ14088 237 aa21.2■□□□□ 0.98
CCDC88B-208ENST00000492980 RFTN1Q14699 578 aaPredicted RBP21.2■□□□□ 0.98
CCDC88B-208ENST00000492980 FAM83EQ2M2I3 478 aa21.2■□□□□ 0.98
CCDC88B-208ENST00000492980 FAM117BQ6P1L5 589 aa21.2■□□□□ 0.98
CCDC88B-208ENST00000492980 VWA7Q9Y334 891 aa21.2■□□□□ 0.98
CCDC88B-208ENST00000492980 MAGEC1O60732 1142 aa21.19■□□□□ 0.98
CCDC88B-208ENST00000492980 RPP40O75818 363 aaKnown RBP21.19■□□□□ 0.98
CCDC88B-208ENST00000492980 WISP3O95389 354 aaPredicted RBP21.19■□□□□ 0.98
CCDC88B-208ENST00000492980 ANP32DO95626 131 aa21.19■□□□□ 0.98
CCDC88B-208ENST00000492980 HK2P52789 917 aa21.19■□□□□ 0.98
CCDC88B-208ENST00000492980 CDKN2DP55273 166 aa21.19■□□□□ 0.98
CCDC88B-208ENST00000492980 ASPHQ12797 758 aa21.19■□□□□ 0.98
CCDC88B-208ENST00000492980 C1orf53Q5VUE5 145 aa21.19■□□□□ 0.98
CCDC88B-208ENST00000492980 C16orf59Q7L2K0 433 aa21.19■□□□□ 0.98
CCDC88B-208ENST00000492980 ARHGAP24Q8N264 748 aa21.19■□□□□ 0.98
CCDC88B-208ENST00000492980 OR13C4Q8NGS5 318 aa21.19■□□□□ 0.98
CCDC88B-208ENST00000492980 SGF29Q96ES7 293 aa21.19■□□□□ 0.98
CCDC88B-208ENST00000492980 EXOC2Q96KP1 924 aa21.19■□□□□ 0.98
CCDC88B-208ENST00000492980 C1orf21Q9H246 121 aa21.19■□□□□ 0.98
CCDC88B-208ENST00000492980 GPAMQ9HCL2 828 aa21.19■□□□□ 0.98
CCDC88B-208ENST00000492980 MAN1C1Q9NR34 630 aa21.19■□□□□ 0.98
CCDC88B-208ENST00000492980 RIMKLBQ9ULI2 386 aa21.19■□□□□ 0.98
CCDC88B-208ENST00000492980 ATP11BQ9Y2G3 1177 aa21.19■□□□□ 0.98
CCDC88B-208ENST00000492980 CCDC162PA2VCL2 907 aa21.19■□□□□ 0.98
CCDC88B-208ENST00000492980 INSIG1O15503 277 aa21.19■□□□□ 0.98
CCDC88B-208ENST00000492980 LTA4HP09960 611 aaKnown RBP21.19■□□□□ 0.98
CCDC88B-208ENST00000492980 RAP1GDS1P52306 607 aa21.19■□□□□ 0.98
CCDC88B-208ENST00000492980 DEFB103AP81534 67 aa21.19■□□□□ 0.98
CCDC88B-208ENST00000492980 CYTH1Q15438 398 aa21.19■□□□□ 0.98
CCDC88B-208ENST00000492980 ACCSLQ4AC99 568 aa21.19■□□□□ 0.98
CCDC88B-208ENST00000492980 DNAL1Q4LDG9 190 aa21.19■□□□□ 0.98
CCDC88B-208ENST00000492980 AGAP9Q5VTM2 703 aa21.19■□□□□ 0.98
CCDC88B-208ENST00000492980 CXorf57Q6NSI4 855 aaKnown RBP21.19■□□□□ 0.98
CCDC88B-208ENST00000492980 TMEM150AQ86TG1 271 aa21.19■□□□□ 0.98
CCDC88B-208ENST00000492980 ENDOVQ8N8Q3 282 aaKnown RBP21.19■□□□□ 0.98
CCDC88B-208ENST00000492980 GPR150Q8NGU9 434 aa21.19■□□□□ 0.98
CCDC88B-208ENST00000492980 UBXN10Q96LJ8 280 aa21.19■□□□□ 0.98
CCDC88B-208ENST00000492980 OR52B2Q96RD2 323 aa21.19■□□□□ 0.98
CCDC88B-208ENST00000492980 TMEM39AQ9NV64 488 aa21.19■□□□□ 0.98
CCDC88B-208ENST00000492980 ZDHHC2Q9UIJ5 367 aa21.19■□□□□ 0.98
CCDC88B-208ENST00000492980 PRRG1O14668 218 aa21.18■□□□□ 0.98
CCDC88B-208ENST00000492980 HDAC3O15379 428 aa21.18■□□□□ 0.98
CCDC88B-208ENST00000492980 GRID2O43424 1007 aa21.18■□□□□ 0.98
CCDC88B-208ENST00000492980 NPHS1O60500 1241 aa21.18■□□□□ 0.98
CCDC88B-208ENST00000492980 GLP2RO95838 553 aa21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms