RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 SPOCK2Q92563 424 aa16.4■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 SKA1Q96BD8 255 aa16.4■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 QKIQ96PU8 341 aaKnown RBP eCLIP16.4■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 MYOCQ99972 504 aa16.4■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 CEP41Q9BYV8 373 aa16.4■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 KCNF1Q9H3M0 494 aa16.4■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 FZD3Q9NPG1 666 aa16.4■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 RAI2Q9Y5P3 530 aa16.4■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 FRYLO94915 3013 aa16.4■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 GVINP1Q7Z2Y8 2422 aa16.39■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 VILLO15195 856 aa16.39■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 MTSS1O43312 755 aa16.39■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 MMP20O60882 483 aa16.39■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 WNT1P04628 370 aa16.39■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 CA4P22748 312 aa16.39■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 PTPN3P26045 913 aa16.39■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 C21orf59P57076 290 aa16.39■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 OTUD4Q01804 1114 aaKnown RBP16.39■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 NIPAL4Q0D2K0 466 aa16.39■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 SGCGQ13326 291 aa16.39■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 XRCC4Q13426 336 aa16.39■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 STAT4Q14765 748 aa16.39■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 MEI1Q5TIA1 1274 aa16.39■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 IL27RAQ6UWB1 636 aa16.39■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 MINDY1Q8N5J2 469 aa16.39■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 CNTD1Q8N815 330 aa16.39■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 TMEM145Q8NBT3 493 aa16.39■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 TRIM58Q8NG06 486 aa16.39■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 ASB12Q8WXK4 309 aa16.39■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 AGAP3Q96P47 875 aa16.39■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 WRAP53Q9BUR4 548 aaKnown RBP16.39■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 C1QTNF2Q9BXJ5 285 aa16.39■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 ANKRD6Q9Y2G4 727 aa16.39■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 PCDHB9Q9Y5E1 797 aa16.39■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 GOLGA6L9A6NEM1 432 aa16.38■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 C4orf47A7E2U8 309 aa16.38■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 H7C0C1 242 aa16.38■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 SLC30A4O14863 429 aa16.38■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 TM7SF2O76062 418 aa16.38■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 PGLSO95336 258 aa16.38■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 CER1O95813 267 aa16.38■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 PAK4O96013 591 aaPredicted RBP16.38■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 NFKBIAP25963 317 aa16.38■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 ATP5OP48047 213 aa16.38■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 FAM193AP78312 1265 aa16.38■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 KIF19Q2TAC6 998 aa16.38■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 TEX44Q53QW1 395 aa16.38■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 SEL1L2Q5TEA6 688 aa16.38■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 IQCHQ86VS3 1027 aa16.38■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 MFSD2AQ8NA29 543 aa16.38■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 OR2I1PQ8NGU4 316 aa16.38■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 ACTL9Q8TC94 416 aa16.38■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 RMDN1Q96DB5 314 aa16.38■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 LENG8Q96PV6 779 aaPredicted RBP16.38■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 PHTF1Q9UMS5 762 aa16.38■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 CA5BQ9Y2D0 317 aa16.38■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 SNX11Q9Y5W9 270 aa16.38■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 ADAMTS9Q9P2N4 1935 aa16.38■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 ZNF292O60281 2723 aa16.37■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 FZD6O60353 706 aa16.37■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 OPHN1O60890 802 aa16.37■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 C6P13671 934 aa16.37■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 CD86P42081 329 aa16.37■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 CTSKP43235 329 aa16.37■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 EIF3EP60228 445 aaKnown RBP16.37■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 SKOR1P84550 965 aa16.37■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 WASHC5Q12768 1159 aa16.37■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 OVGP1Q12889 678 aa16.37■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 RALGDSQ12967 914 aa16.37■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 IHHQ14623 411 aa16.37■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 RPS6KA1Q15418 735 aa16.37■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 FAM182AQ5T1J6 154 aa16.37■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 GCNT7Q6ZNI0 430 aa16.37■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 DPPA4Q7L190 304 aa16.37■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 CDKL3Q8IVW4 592 aaPredicted RBP16.37■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 DENND6BQ8NEG7 585 aa16.37■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 HTR3CQ8WXA8 447 aa16.37■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 RTKNQ9BST9 563 aa16.37■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 C1QTNF7Q9BXJ2 289 aa16.37■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 TDRD1Q9BXT4 1180 aaKnown RBP16.37■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 GAREM1Q9H706 876 aa16.37■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 DNAAF2Q9NVR5 837 aaKnown RBP16.37■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 GON4LQ3T8J9 2241 aa16.37■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 PI4KAP42356 2102 aa16.36■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 CFAP69A5D8W1 941 aa16.36■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 H0Y8X5 98 aa16.36■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 TLR4O00206 839 aa16.36■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 RAD51BO15315 384 aa16.36■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 ZSCAN12O43309 604 aa16.36■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 MAGEC1O60732 1142 aa16.36■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 MMP2P08253 660 aa16.36■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 PDHA1P08559 390 aa16.36■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 ELFN1P0C7U0 828 aa16.36■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 ID4P47928 161 aa16.36■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 LIG3P49916 1009 aa16.36■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 EPHB1P54762 984 aa16.36■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 CLDN2P57739 230 aa16.36■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 NXPH1P58417 271 aa16.36■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 SEMG2Q02383 582 aa16.36■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 KLF1Q13351 362 aaPredicted RBP16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms