RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 TMEM170AQ8WVE7 144 aa3.15□□□□□ -1.91
SMC4-220ENST00000488017 KIAA1191Q96A73 305 aa3.15□□□□□ -1.91
SMC4-220ENST00000488017 EID2BQ96D98 161 aa3.15□□□□□ -1.91
SMC4-220ENST00000488017 ZNF414Q96IQ9 312 aa3.15□□□□□ -1.91
SMC4-220ENST00000488017 NAA15Q9BXJ9 866 aaKnown RBP3.15□□□□□ -1.91
SMC4-220ENST00000488017 CSTL1Q9H114 145 aa3.15□□□□□ -1.91
SMC4-220ENST00000488017 ELAC1Q9H777 363 aaKnown RBP3.15□□□□□ -1.91
SMC4-220ENST00000488017 CYSLTR2Q9NS75 346 aa3.15□□□□□ -1.91
SMC4-220ENST00000488017 MCM9Q9NXL9 1143 aa3.15□□□□□ -1.91
SMC4-220ENST00000488017 NDRG3Q9UGV2 375 aa3.15□□□□□ -1.91
SMC4-220ENST00000488017 FAM50BQ9Y247 325 aa3.15□□□□□ -1.91
SMC4-220ENST00000488017 PCDHGB2Q9Y5G2 931 aa3.15□□□□□ -1.91
SMC4-220ENST00000488017 SLC25A17O43808 307 aa3.14□□□□□ -1.91
SMC4-220ENST00000488017 HBP1O60381 514 aa3.14□□□□□ -1.91
SMC4-220ENST00000488017 NDUFB4O95168 129 aa3.14□□□□□ -1.91
SMC4-220ENST00000488017 SERPINC1P01008 464 aa3.14□□□□□ -1.91
SMC4-220ENST00000488017 IGLV1-44P01699 117 aa3.14□□□□□ -1.91
SMC4-220ENST00000488017 CYP21A2P08686 494 aa3.14□□□□□ -1.91
SMC4-220ENST00000488017 GPTP24298 496 aa3.14□□□□□ -1.91
SMC4-220ENST00000488017 TM4SF4P48230 202 aa3.14□□□□□ -1.91
SMC4-220ENST00000488017 HOXA1P49639 335 aaPredicted RBP3.14□□□□□ -1.91
SMC4-220ENST00000488017 HDAC4P56524 1084 aa3.14□□□□□ -1.91
SMC4-220ENST00000488017 GNB1P62873 340 aa3.14□□□□□ -1.91
SMC4-220ENST00000488017 IL13RA2Q14627 380 aa3.14□□□□□ -1.91
SMC4-220ENST00000488017 SAFBQ15424 915 aaKnown RBP eCLIP3.14□□□□□ -1.91
SMC4-220ENST00000488017 COBLL1Q53SF7 1204 aa3.14□□□□□ -1.91
SMC4-220ENST00000488017 KCNT1Q5JUK3 1230 aa3.14□□□□□ -1.91
SMC4-220ENST00000488017 PAPPA-AS1Q5QFB9 102 aa3.14□□□□□ -1.91
SMC4-220ENST00000488017 PDSS1Q5T2R2 415 aa3.14□□□□□ -1.91
SMC4-220ENST00000488017 FAAP20Q6NZ36 180 aa3.14□□□□□ -1.91
SMC4-220ENST00000488017 WDR73Q6P4I2 378 aa3.14□□□□□ -1.91
SMC4-220ENST00000488017 ZNF852Q6ZMS4 543 aa3.14□□□□□ -1.91
SMC4-220ENST00000488017 TMEM219Q86XT9 240 aa3.14□□□□□ -1.91
SMC4-220ENST00000488017 ODF3L1Q8IXM7 274 aa3.14□□□□□ -1.91
SMC4-220ENST00000488017 SETD9Q8NE22 299 aa3.14□□□□□ -1.91
SMC4-220ENST00000488017 TSR2Q969E8 191 aaKnown RBP3.14□□□□□ -1.91
SMC4-220ENST00000488017 ZNF689Q96CS4 500 aaPredicted RBP3.14□□□□□ -1.91
SMC4-220ENST00000488017 LRR1Q96L50 414 aa3.14□□□□□ -1.91
SMC4-220ENST00000488017 CDK19Q9BWU1 502 aa3.14□□□□□ -1.91
SMC4-220ENST00000488017 CERS4Q9HA82 394 aa3.14□□□□□ -1.91
SMC4-220ENST00000488017 CHST12Q9NRB3 414 aa3.14□□□□□ -1.91
SMC4-220ENST00000488017 IFT80Q9P2H3 777 aaPredicted RBP3.14□□□□□ -1.91
SMC4-220ENST00000488017 EBAG9O00559 213 aa3.13□□□□□ -1.91
SMC4-220ENST00000488017 PTPN9P43378 593 aa3.13□□□□□ -1.91
SMC4-220ENST00000488017 ARSFP54793 590 aa3.13□□□□□ -1.91
SMC4-220ENST00000488017 ARHGAP8P85298 464 aa3.13□□□□□ -1.91
SMC4-220ENST00000488017 AP5B1Q2VPB7 878 aa3.13□□□□□ -1.91
SMC4-220ENST00000488017 TRNP1Q6NT89 227 aa3.13□□□□□ -1.91
SMC4-220ENST00000488017 SLC27A1Q6PCB7 646 aa3.13□□□□□ -1.91
SMC4-220ENST00000488017 C11orf96Q7Z7L8 435 aa3.13□□□□□ -1.91
SMC4-220ENST00000488017 SLC44A2Q8IWA5 706 aaPredicted RBP3.13□□□□□ -1.91
SMC4-220ENST00000488017 BBS10Q8TAM1 723 aa3.13□□□□□ -1.91
SMC4-220ENST00000488017 FAM222BQ8WU58 562 aa3.13□□□□□ -1.91
SMC4-220ENST00000488017 STYXQ8WUJ0 223 aa3.13□□□□□ -1.91
SMC4-220ENST00000488017 TMEM190Q8WZ59 177 aa3.13□□□□□ -1.91
SMC4-220ENST00000488017 LINC00479Q96M42 142 aa3.13□□□□□ -1.91
SMC4-220ENST00000488017 SARGQ9BW04 601 aa3.13□□□□□ -1.91
SMC4-220ENST00000488017 TRIM15Q9C019 465 aa3.13□□□□□ -1.91
SMC4-220ENST00000488017 ERVMER34-1Q9H9K5 563 aa3.13□□□□□ -1.91
SMC4-220ENST00000488017 C17orf75Q9HAS0 396 aa3.13□□□□□ -1.91
SMC4-220ENST00000488017 TMEM30AQ9NV96 361 aa3.13□□□□□ -1.91
SMC4-220ENST00000488017 COL5A2P05997 1499 aaPredicted RBP3.13□□□□□ -1.91
SMC4-220ENST00000488017 PDS5AQ29RF7 1337 aaKnown RBP3.13□□□□□ -1.91
SMC4-220ENST00000488017 A0A0J9YWU9 116 aa3.12□□□□□ -1.91
SMC4-220ENST00000488017 LOC105371045A0A1W2PR82 267 aa3.12□□□□□ -1.91
SMC4-220ENST00000488017 AQP12BA6NM10 295 aa3.12□□□□□ -1.91
SMC4-220ENST00000488017 AKR1B15C9JRZ8 316 aaPredicted RBP3.12□□□□□ -1.91
SMC4-220ENST00000488017 PMM2O15305 246 aa3.12□□□□□ -1.91
SMC4-220ENST00000488017 ITGA2BP08514 1039 aa3.12□□□□□ -1.91
SMC4-220ENST00000488017 CHRNB4P30926 498 aa3.12□□□□□ -1.91
SMC4-220ENST00000488017 TMPOP42166 694 aaKnown RBP3.12□□□□□ -1.91
SMC4-220ENST00000488017 CLK1P49759 484 aaKnown RBP3.12□□□□□ -1.91
SMC4-220ENST00000488017 TERF1P54274 439 aa3.12□□□□□ -1.91
SMC4-220ENST00000488017 THOC5Q13769 683 aaKnown RBP3.12□□□□□ -1.91
SMC4-220ENST00000488017 PTK2BQ14289 1009 aa3.12□□□□□ -1.91
SMC4-220ENST00000488017 SFMBT2Q5VUG0 894 aa3.12□□□□□ -1.91
SMC4-220ENST00000488017 KCTD8Q6ZWB6 473 aa3.12□□□□□ -1.91
SMC4-220ENST00000488017 FSIP1Q8NA03 581 aa3.12□□□□□ -1.91
SMC4-220ENST00000488017 OPRPNQ99935 248 aaPredicted RBP3.12□□□□□ -1.91
SMC4-220ENST00000488017 KATNAL1Q9BW62 490 aa3.12□□□□□ -1.91
SMC4-220ENST00000488017 PDZD7Q9H5P4 517 aa3.12□□□□□ -1.91
SMC4-220ENST00000488017 RPS10P5Q9NQ39 176 aa3.12□□□□□ -1.91
SMC4-220ENST00000488017 CCDC177Q9NQR7 707 aaPredicted RBP3.12□□□□□ -1.91
SMC4-220ENST00000488017 ZDHHC18Q9NUE0 388 aa3.12□□□□□ -1.91
SMC4-220ENST00000488017 GREB1LQ9C091 1923 aaPredicted RBP3.12□□□□□ -1.91
SMC4-220ENST00000488017 NDUFAF8A1L188 74 aa3.11□□□□□ -1.91
SMC4-220ENST00000488017 FAM90A20PA6NIJ5 464 aa3.11□□□□□ -1.91
SMC4-220ENST00000488017 SMIM1B2RUZ4 78 aa3.11□□□□□ -1.91
SMC4-220ENST00000488017 HHLA1C9JL84 531 aa3.11□□□□□ -1.91
SMC4-220ENST00000488017 ARHGEF9O43307 516 aa3.11□□□□□ -1.91
SMC4-220ENST00000488017 ACTL6BO94805 426 aa3.11□□□□□ -1.91
SMC4-220ENST00000488017 RGS11O94810 467 aa3.11□□□□□ -1.91
SMC4-220ENST00000488017 CD58P19256 250 aa3.11□□□□□ -1.91
SMC4-220ENST00000488017 CHATP28329 748 aa3.11□□□□□ -1.91
SMC4-220ENST00000488017 PNPLA4P41247 253 aa3.11□□□□□ -1.91
SMC4-220ENST00000488017 SEC61BP60468 96 aaKnown RBP3.11□□□□□ -1.91
SMC4-220ENST00000488017 AP2B1P63010 937 aa3.11□□□□□ -1.91
SMC4-220ENST00000488017 SPARCL1Q14515 664 aa3.11□□□□□ -1.91
SMC4-220ENST00000488017 LRRC24Q50LG9 513 aa3.11□□□□□ -1.91
SMC4-220ENST00000488017 GJB7Q6PEY0 223 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms