RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 SNTG1Q9NSN8 517 aa3.98□□□□□ -1.77
VPS41-213ENST00000485955 BABAM1Q9NWV8 329 aa3.98□□□□□ -1.77
VPS41-213ENST00000485955 CTNNAL1Q9UBT7 734 aa3.98□□□□□ -1.77
VPS41-213ENST00000485955 HSF4Q9ULV5 492 aa3.98□□□□□ -1.77
VPS41-213ENST00000485955 IFNL4K9M1U5 179 aa3.97□□□□□ -1.77
VPS41-213ENST00000485955 WNT9BO14905 357 aa3.97□□□□□ -1.77
VPS41-213ENST00000485955 KRT86O43790 486 aa3.97□□□□□ -1.77
VPS41-213ENST00000485955 PMS2P2O95744 297 aa3.97□□□□□ -1.77
VPS41-213ENST00000485955 IGLV2-11P01706 119 aa3.97□□□□□ -1.77
VPS41-213ENST00000485955 URODP06132 367 aa3.97□□□□□ -1.77
VPS41-213ENST00000485955 F7P08709 466 aaPredicted RBP3.97□□□□□ -1.77
VPS41-213ENST00000485955 PPFIA1Q13136 1202 aa3.97□□□□□ -1.77
VPS41-213ENST00000485955 KRT81Q14533 505 aa3.97□□□□□ -1.77
VPS41-213ENST00000485955 B3GNT6Q6ZMB0 384 aa3.97□□□□□ -1.77
VPS41-213ENST00000485955 NEK10Q6ZWH5 1172 aa3.97□□□□□ -1.77
VPS41-213ENST00000485955 NEK9Q8TD19 979 aa3.97□□□□□ -1.77
VPS41-213ENST00000485955 CREB3L4Q8TEY5 395 aa3.97□□□□□ -1.77
VPS41-213ENST00000485955 ZSCAN31Q96LW9 406 aaPredicted RBP3.97□□□□□ -1.77
VPS41-213ENST00000485955 LBHD1Q9BQE6 289 aaPredicted RBP3.97□□□□□ -1.77
VPS41-213ENST00000485955 HEMGNQ9BXL5 484 aa3.97□□□□□ -1.77
VPS41-213ENST00000485955 SDF2L1Q9HCN8 221 aa3.97□□□□□ -1.77
VPS41-213ENST00000485955 CISD1Q9NZ45 108 aaKnown RBP3.97□□□□□ -1.77
VPS41-213ENST00000485955 IL1RAPL1Q9NZN1 696 aa3.97□□□□□ -1.77
VPS41-213ENST00000485955 SLCO3A1Q9UIG8 710 aa3.97□□□□□ -1.77
VPS41-213ENST00000485955 BICRAQ9NZM4 1560 aa3.97□□□□□ -1.77
VPS41-213ENST00000485955 IFRD1O00458 451 aaPredicted RBP3.96□□□□□ -1.78
VPS41-213ENST00000485955 CLGNO14967 610 aa3.96□□□□□ -1.78
VPS41-213ENST00000485955 EIF5BO60841 1220 aaKnown RBP3.96□□□□□ -1.78
VPS41-213ENST00000485955 NDUFS7O75251 213 aa3.96□□□□□ -1.78
VPS41-213ENST00000485955 KRT36O76013 467 aa3.96□□□□□ -1.78
VPS41-213ENST00000485955 PLGP00747 810 aaPredicted RBP3.96□□□□□ -1.78
VPS41-213ENST00000485955 EFNA5P52803 228 aa3.96□□□□□ -1.78
VPS41-213ENST00000485955 YWHAZP63104 245 aaKnown RBP3.96□□□□□ -1.78
VPS41-213ENST00000485955 UBE3AQ05086 875 aa3.96□□□□□ -1.78
VPS41-213ENST00000485955 ARL16Q0P5N6 197 aa3.96□□□□□ -1.78
VPS41-213ENST00000485955 GRIK3Q13003 919 aa3.96□□□□□ -1.78
VPS41-213ENST00000485955 SERTAD4-AS1Q5TG53 156 aa3.96□□□□□ -1.78
VPS41-213ENST00000485955 GFI1BQ5VTD9 330 aa3.96□□□□□ -1.78
VPS41-213ENST00000485955 ANKRD54Q6NXT1 300 aa3.96□□□□□ -1.78
VPS41-213ENST00000485955 MEX3BQ6ZN04 569 aaKnown RBP3.96□□□□□ -1.78
VPS41-213ENST00000485955 ZSCAN2Q7Z7L9 614 aaPredicted RBP3.96□□□□□ -1.78
VPS41-213ENST00000485955 GPAT4Q86UL3 456 aa3.96□□□□□ -1.78
VPS41-213ENST00000485955 SATL1Q86VE3 508 aa3.96□□□□□ -1.78
VPS41-213ENST00000485955 ZNF441Q8N8Z8 693 aa3.96□□□□□ -1.78
VPS41-213ENST00000485955 POC1AQ8NBT0 407 aa3.96□□□□□ -1.78
VPS41-213ENST00000485955 NR4A3Q92570 626 aa3.96□□□□□ -1.78
VPS41-213ENST00000485955 MTBPQ96DY7 904 aa3.96□□□□□ -1.78
VPS41-213ENST00000485955 ZC3HAV1LQ96H79 300 aaKnown RBP3.96□□□□□ -1.78
VPS41-213ENST00000485955 C3orf30Q96M34 536 aa3.96□□□□□ -1.78
VPS41-213ENST00000485955 MXRA8Q9BRK3 442 aa3.96□□□□□ -1.78
VPS41-213ENST00000485955 DDX4Q9NQI0 724 aaKnown RBP3.96□□□□□ -1.78
VPS41-213ENST00000485955 TMEM160Q9NX00 188 aa3.96□□□□□ -1.78
VPS41-213ENST00000485955 CDC14AQ9UNH5 594 aa3.96□□□□□ -1.78
VPS41-213ENST00000485955 NISCHQ9Y2I1 1504 aa3.95□□□□□ -1.78
VPS41-213ENST00000485955 KIF26BQ2KJY2 2108 aa3.95□□□□□ -1.78
VPS41-213ENST00000485955 HNRNPCL2B2RXH8 293 aa3.95□□□□□ -1.78
VPS41-213ENST00000485955 TEX22C9J3V5 150 aa3.95□□□□□ -1.78
VPS41-213ENST00000485955 BMPR1BO00238 502 aa3.95□□□□□ -1.78
VPS41-213ENST00000485955 EIF3FO00303 357 aaPredicted RBP3.95□□□□□ -1.78
VPS41-213ENST00000485955 GAGE7O76087 117 aa3.95□□□□□ -1.78
VPS41-213ENST00000485955 NDUFB4O95168 129 aa3.95□□□□□ -1.78
VPS41-213ENST00000485955 UMODP07911 640 aa3.95□□□□□ -1.78
VPS41-213ENST00000485955 GAGE12FP0CL80 117 aa3.95□□□□□ -1.78
VPS41-213ENST00000485955 GAGE12GP0CL81 117 aa3.95□□□□□ -1.78
VPS41-213ENST00000485955 GAGE12IP0CL82 117 aa3.95□□□□□ -1.78
VPS41-213ENST00000485955 HNRNPH1P31943 449 aaKnown RBP3.95□□□□□ -1.78
VPS41-213ENST00000485955 ZNF155Q12901 538 aaPredicted RBP3.95□□□□□ -1.78
VPS41-213ENST00000485955 GAGE1Q13065 139 aa3.95□□□□□ -1.78
VPS41-213ENST00000485955 GAGE4Q13068 117 aa3.95□□□□□ -1.78
VPS41-213ENST00000485955 ITGADQ13349 1161 aa3.95□□□□□ -1.78
VPS41-213ENST00000485955 CALCRLQ16602 461 aa3.95□□□□□ -1.78
VPS41-213ENST00000485955 NFIL3Q16649 462 aa3.95□□□□□ -1.78
VPS41-213ENST00000485955 AMZ1Q400G9 498 aa3.95□□□□□ -1.78
VPS41-213ENST00000485955 KRTAP5-11Q6L8G4 156 aa3.95□□□□□ -1.78
VPS41-213ENST00000485955 ANKRD42Q8N9B4 389 aa3.95□□□□□ -1.78
VPS41-213ENST00000485955 SPATA22Q8NHS9 363 aa3.95□□□□□ -1.78
VPS41-213ENST00000485955 RND1Q92730 232 aa3.95□□□□□ -1.78
VPS41-213ENST00000485955 ZNF385AQ96PM9 386 aaKnown RBP3.95□□□□□ -1.78
VPS41-213ENST00000485955 OR1F2PQ96R84 312 aa3.95□□□□□ -1.78
VPS41-213ENST00000485955 NODALQ96S42 347 aa3.95□□□□□ -1.78
VPS41-213ENST00000485955 MMTAG2Q9BU76 263 aaKnown RBP3.95□□□□□ -1.78
VPS41-213ENST00000485955 SMYD2Q9NRG4 433 aa3.95□□□□□ -1.78
VPS41-213ENST00000485955 SMARCAL1Q9NZC9 954 aa3.95□□□□□ -1.78
VPS41-213ENST00000485955 KIAA1456Q9P272 454 aa3.95□□□□□ -1.78
VPS41-213ENST00000485955 KCNS2Q9ULS6 477 aa3.95□□□□□ -1.78
VPS41-213ENST00000485955 CC2D2AQ9P2K1 1620 aa3.95□□□□□ -1.78
VPS41-213ENST00000485955 ZNF587BE7ETH6 402 aa3.94□□□□□ -1.78
VPS41-213ENST00000485955 SOCS6O14544 535 aa3.94□□□□□ -1.78
VPS41-213ENST00000485955 MID1O15344 667 aa3.94□□□□□ -1.78
VPS41-213ENST00000485955 LINC00271P0C7V0 271 aa3.94□□□□□ -1.78
VPS41-213ENST00000485955 PCNAP12004 261 aa3.94□□□□□ -1.78
VPS41-213ENST00000485955 ETFAP13804 333 aa3.94□□□□□ -1.78
VPS41-213ENST00000485955 PGM1P36871 562 aa3.94□□□□□ -1.78
VPS41-213ENST00000485955 EFNB1P98172 346 aa3.94□□□□□ -1.78
VPS41-213ENST00000485955 KHDRBS1Q07666 443 aaKnown RBP eCLIP3.94□□□□□ -1.78
VPS41-213ENST00000485955 OASLQ15646 514 aaKnown RBP3.94□□□□□ -1.78
VPS41-213ENST00000485955 MMEL1Q495T6 779 aa3.94□□□□□ -1.78
VPS41-213ENST00000485955 SGO1Q5FBB7 561 aa3.94□□□□□ -1.78
VPS41-213ENST00000485955 ZNF766Q5HY98 468 aa3.94□□□□□ -1.78
VPS41-213ENST00000485955 C9orf139Q6ZV77 190 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms