RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 TRIM58Q8NG06 486 aa16■□□□□ 0.15
UPF3A-208ENST00000484246 MCCC1Q96RQ3 725 aaPredicted RBP16■□□□□ 0.15
UPF3A-208ENST00000484246 RTKNQ9BST9 563 aa16■□□□□ 0.15
UPF3A-208ENST00000484246 HEMGNQ9BXL5 484 aa16■□□□□ 0.15
UPF3A-208ENST00000484246 TDRD1Q9BXT4 1180 aaKnown RBP16■□□□□ 0.15
UPF3A-208ENST00000484246 SLC17A9Q9BYT1 436 aa16■□□□□ 0.15
UPF3A-208ENST00000484246 KCNF1Q9H3M0 494 aa16■□□□□ 0.15
UPF3A-208ENST00000484246 GPR27Q9NS67 375 aa16■□□□□ 0.15
UPF3A-208ENST00000484246 SAE1Q9UBE0 346 aaPredicted RBP16■□□□□ 0.15
UPF3A-208ENST00000484246 PHTF1Q9UMS5 762 aa16■□□□□ 0.15
UPF3A-208ENST00000484246 PACSIN2Q9UNF0 486 aaPredicted RBP16■□□□□ 0.15
UPF3A-208ENST00000484246 RPL26L1Q9UNX3 145 aaKnown RBP16■□□□□ 0.15
UPF3A-208ENST00000484246 RAI2Q9Y5P3 530 aa16■□□□□ 0.15
UPF3A-208ENST00000484246 FRYLO94915 3013 aa16■□□□□ 0.15
UPF3A-208ENST00000484246 NUP205Q92621 2012 aa15.99■□□□□ 0.15
UPF3A-208ENST00000484246 A0A1B0GVT2 93 aa15.99■□□□□ 0.15
UPF3A-208ENST00000484246 TM4SF5O14894 197 aa15.99■□□□□ 0.15
UPF3A-208ENST00000484246 WNT9AO14904 365 aa15.99■□□□□ 0.15
UPF3A-208ENST00000484246 MAGEC1O60732 1142 aa15.99■□□□□ 0.15
UPF3A-208ENST00000484246 NEBLO76041 1014 aa15.99■□□□□ 0.15
UPF3A-208ENST00000484246 CER1O95813 267 aa15.99■□□□□ 0.15
UPF3A-208ENST00000484246 CPP00450 1065 aa15.99■□□□□ 0.15
UPF3A-208ENST00000484246 WNT1P04628 370 aa15.99■□□□□ 0.15
UPF3A-208ENST00000484246 PRLRP16471 622 aa15.99■□□□□ 0.15
UPF3A-208ENST00000484246 CA4P22748 312 aa15.99■□□□□ 0.15
UPF3A-208ENST00000484246 PTPN3P26045 913 aa15.99■□□□□ 0.15
UPF3A-208ENST00000484246 CSNK1EP49674 416 aaKnown RBP15.99■□□□□ 0.15
UPF3A-208ENST00000484246 DSC2Q02487 901 aa15.99■□□□□ 0.15
UPF3A-208ENST00000484246 NIPAL4Q0D2K0 466 aa15.99■□□□□ 0.15
UPF3A-208ENST00000484246 WASHC5Q12768 1159 aa15.99■□□□□ 0.15
UPF3A-208ENST00000484246 LLGL1Q15334 1064 aa15.99■□□□□ 0.15
UPF3A-208ENST00000484246 KIF19Q2TAC6 998 aa15.99■□□□□ 0.15
UPF3A-208ENST00000484246 TEX44Q53QW1 395 aa15.99■□□□□ 0.15
UPF3A-208ENST00000484246 LRRC73Q5JTD7 316 aa15.99■□□□□ 0.15
UPF3A-208ENST00000484246 ARMC12Q5T9G4 340 aa15.99■□□□□ 0.15
UPF3A-208ENST00000484246 MEI1Q5TIA1 1274 aa15.99■□□□□ 0.15
UPF3A-208ENST00000484246 KYAT3Q6YP21 454 aaKnown RBP15.99■□□□□ 0.15
UPF3A-208ENST00000484246 MINDY1Q8N5J2 469 aa15.99■□□□□ 0.15
UPF3A-208ENST00000484246 ACTL9Q8TC94 416 aa15.99■□□□□ 0.15
UPF3A-208ENST00000484246 CXorf40AQ8TE69 158 aa15.99■□□□□ 0.15
UPF3A-208ENST00000484246 LRRN4Q8WUT4 740 aa15.99■□□□□ 0.15
UPF3A-208ENST00000484246 IMP4Q96G21 291 aaKnown RBP15.99■□□□□ 0.15
UPF3A-208ENST00000484246 TEKT5Q96M29 485 aa15.99■□□□□ 0.15
UPF3A-208ENST00000484246 KLF6Q99612 283 aaPredicted RBP15.99■□□□□ 0.15
UPF3A-208ENST00000484246 SLC25A51Q9H1U9 297 aa15.99■□□□□ 0.15
UPF3A-208ENST00000484246 CARD9Q9H257 536 aa15.99■□□□□ 0.15
UPF3A-208ENST00000484246 LZTFL1Q9NQ48 299 aa15.99■□□□□ 0.15
UPF3A-208ENST00000484246 AASDHPPTQ9NRN7 309 aa15.99■□□□□ 0.15
UPF3A-208ENST00000484246 ANKRD6Q9Y2G4 727 aa15.99■□□□□ 0.15
UPF3A-208ENST00000484246 PCDHGC4Q9Y5F7 938 aa15.99■□□□□ 0.15
UPF3A-208ENST00000484246 HS3ST3A1Q9Y663 406 aa15.99■□□□□ 0.15
UPF3A-208ENST00000484246 SDK1Q7Z5N4 2213 aa15.98■□□□□ 0.15
UPF3A-208ENST00000484246 TTC24A2A3L6 582 aaPredicted RBP15.98■□□□□ 0.15
UPF3A-208ENST00000484246 IGLON5A6NGN9 336 aa15.98■□□□□ 0.15
UPF3A-208ENST00000484246 SLC31A1O15431 190 aa15.98■□□□□ 0.15
UPF3A-208ENST00000484246 DFNA5O60443 496 aa15.98■□□□□ 0.15
UPF3A-208ENST00000484246 TM7SF2O76062 418 aa15.98■□□□□ 0.15
UPF3A-208ENST00000484246 MMP2P08253 660 aa15.98■□□□□ 0.15
UPF3A-208ENST00000484246 ATXN3P54252 364 aaPredicted RBP15.98■□□□□ 0.15
UPF3A-208ENST00000484246 NXPH1P58417 271 aa15.98■□□□□ 0.15
UPF3A-208ENST00000484246 SKOR1P84550 965 aa15.98■□□□□ 0.15
UPF3A-208ENST00000484246 OTUD4Q01804 1114 aaKnown RBP15.98■□□□□ 0.15
UPF3A-208ENST00000484246 SLC14A1Q13336 389 aa15.98■□□□□ 0.15
UPF3A-208ENST00000484246 PUM1Q14671 1186 aaKnown RBP eCLIP15.98■□□□□ 0.15
UPF3A-208ENST00000484246 STAT4Q14765 748 aa15.98■□□□□ 0.15
UPF3A-208ENST00000484246 RSPO4Q2I0M5 234 aaPredicted RBP15.98■□□□□ 0.15
UPF3A-208ENST00000484246 ZNF423Q2M1K9 1284 aa15.98■□□□□ 0.15
UPF3A-208ENST00000484246 GCNT7Q6ZNI0 430 aa15.98■□□□□ 0.15
UPF3A-208ENST00000484246 ADAT2Q7Z6V5 191 aaKnown RBP15.98■□□□□ 0.15
UPF3A-208ENST00000484246 TTC13Q8NBP0 860 aa15.98■□□□□ 0.15
UPF3A-208ENST00000484246 PIH1D2Q8WWB5 315 aa15.98■□□□□ 0.15
UPF3A-208ENST00000484246 RMDN1Q96DB5 314 aa15.98■□□□□ 0.15
UPF3A-208ENST00000484246 C1QTNF7Q9BXJ2 289 aa15.98■□□□□ 0.15
UPF3A-208ENST00000484246 ERVMER34-1Q9H9K5 563 aa15.98■□□□□ 0.15
UPF3A-208ENST00000484246 FSCN3Q9NQT6 498 aa15.98■□□□□ 0.15
UPF3A-208ENST00000484246 PCDHB9Q9Y5E1 797 aa15.98■□□□□ 0.15
UPF3A-208ENST00000484246 C4orf47A7E2U8 309 aa15.97■□□□□ 0.15
UPF3A-208ENST00000484246 TLR4O00206 839 aa15.97■□□□□ 0.15
UPF3A-208ENST00000484246 PSMD11O00231 422 aa15.97■□□□□ 0.15
UPF3A-208ENST00000484246 TOR1BO14657 336 aa15.97■□□□□ 0.15
UPF3A-208ENST00000484246 PRLP01236 227 aa15.97■□□□□ 0.15
UPF3A-208ENST00000484246 C6P13671 934 aa15.97■□□□□ 0.15
UPF3A-208ENST00000484246 ITIH2P19823 946 aa15.97■□□□□ 0.15
UPF3A-208ENST00000484246 C21orf59P57076 290 aa15.97■□□□□ 0.15
UPF3A-208ENST00000484246 ITKQ08881 620 aa15.97■□□□□ 0.15
UPF3A-208ENST00000484246 SGCGQ13326 291 aa15.97■□□□□ 0.15
UPF3A-208ENST00000484246 ZNF211Q13398 564 aaPredicted RBP15.97■□□□□ 0.15
UPF3A-208ENST00000484246 CCDC181Q5TID7 509 aa15.97■□□□□ 0.15
UPF3A-208ENST00000484246 AADACL2Q6P093 401 aa15.97■□□□□ 0.15
UPF3A-208ENST00000484246 LAYNQ6UX15 382 aa15.97■□□□□ 0.15
UPF3A-208ENST00000484246 USP45Q70EL2 814 aa15.97■□□□□ 0.15
UPF3A-208ENST00000484246 CDKL3Q8IVW4 592 aaPredicted RBP15.97■□□□□ 0.15
UPF3A-208ENST00000484246 OXR1Q8N573 874 aa15.97■□□□□ 0.15
UPF3A-208ENST00000484246 HTR3CQ8WXA8 447 aa15.97■□□□□ 0.15
UPF3A-208ENST00000484246 CENPTQ96BT3 561 aa15.97■□□□□ 0.15
UPF3A-208ENST00000484246 HAUS1Q96CS2 278 aa15.97■□□□□ 0.15
UPF3A-208ENST00000484246 SCRN2Q96FV2 425 aa15.97■□□□□ 0.15
UPF3A-208ENST00000484246 LYSMD1Q96S90 227 aa15.97■□□□□ 0.15
UPF3A-208ENST00000484246 GLOD4Q9HC38 313 aa15.97■□□□□ 0.15
UPF3A-208ENST00000484246 B4GALT6Q9UBX8 382 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms