RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 DSC2Q02487 901 aa12.29□□□□□ -0.44
PTPRF-212ENST00000477970 IHHQ14623 411 aa12.29□□□□□ -0.44
PTPRF-212ENST00000477970 RFTN1Q14699 578 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-212ENST00000477970 VWA5B1Q5TIE3 1220 aa12.29□□□□□ -0.44
PTPRF-212ENST00000477970 RNF19BQ6ZMZ0 732 aa12.29□□□□□ -0.44
PTPRF-212ENST00000477970 TFAP2DQ7Z6R9 452 aa12.29□□□□□ -0.44
PTPRF-212ENST00000477970 SLC22A9Q8IVM8 553 aa12.29□□□□□ -0.44
PTPRF-212ENST00000477970 FAM126BQ8IXS8 530 aa12.29□□□□□ -0.44
PTPRF-212ENST00000477970 PLCD3Q8N3E9 789 aa12.29□□□□□ -0.44
PTPRF-212ENST00000477970 DNAJC9Q8WXX5 260 aa12.29□□□□□ -0.44
PTPRF-212ENST00000477970 NVLO15381 856 aaKnown RBP12.29□□□□□ -0.44
PTPRF-212ENST00000477970 CHRNGP07510 517 aa12.29□□□□□ -0.44
PTPRF-212ENST00000477970 ITGAXP20702 1163 aa12.29□□□□□ -0.44
PTPRF-212ENST00000477970 SEPT6Q14141 434 aa12.29□□□□□ -0.44
PTPRF-212ENST00000477970 CCDC6Q16204 474 aa12.29□□□□□ -0.44
PTPRF-212ENST00000477970 SLC8B1Q6J4K2 584 aa12.29□□□□□ -0.44
PTPRF-212ENST00000477970 FAM45BPQ6NSW5 357 aa12.29□□□□□ -0.44
PTPRF-212ENST00000477970 KLC3Q6P597 504 aa12.29□□□□□ -0.44
PTPRF-212ENST00000477970 KDM1BQ8NB78 822 aa12.29□□□□□ -0.44
PTPRF-212ENST00000477970 FAM45AQ8TCE6 357 aa12.29□□□□□ -0.44
PTPRF-212ENST00000477970 HEXDCQ8WVB3 486 aa12.29□□□□□ -0.44
PTPRF-212ENST00000477970 MGME1Q9BQP7 344 aa12.29□□□□□ -0.44
PTPRF-212ENST00000477970 CRISPLD1Q9H336 500 aa12.29□□□□□ -0.44
PTPRF-212ENST00000477970 PRO3102Q9H379 93 aa12.29□□□□□ -0.44
PTPRF-212ENST00000477970 CDYLQ9Y232 598 aa12.29□□□□□ -0.44
PTPRF-212ENST00000477970 BACE2Q9Y5Z0 518 aa12.29□□□□□ -0.44
PTPRF-212ENST00000477970 OGNP20774 298 aaKnown RBP12.28□□□□□ -0.44
PTPRF-212ENST00000477970 CES1P23141 567 aa12.28□□□□□ -0.44
PTPRF-212ENST00000477970 AVPR1AP37288 418 aa12.28□□□□□ -0.44
PTPRF-212ENST00000477970 NAGLUP54802 743 aa12.28□□□□□ -0.44
PTPRF-212ENST00000477970 PCSK7Q16549 785 aa12.28□□□□□ -0.44
PTPRF-212ENST00000477970 CNSTQ6PJW8 725 aa12.28□□□□□ -0.44
PTPRF-212ENST00000477970 RNF168Q8IYW5 571 aaPredicted RBP12.28□□□□□ -0.44
PTPRF-212ENST00000477970 KCNV2Q8TDN2 545 aa12.28□□□□□ -0.44
PTPRF-212ENST00000477970 PLD4Q96BZ4 506 aa12.28□□□□□ -0.44
PTPRF-212ENST00000477970 RPRD1AQ96P16 312 aaPredicted RBP12.28□□□□□ -0.44
PTPRF-212ENST00000477970 TTPALQ9BTX7 342 aa12.28□□□□□ -0.44
PTPRF-212ENST00000477970 TRMOQ9BU70 441 aa12.28□□□□□ -0.44
PTPRF-212ENST00000477970 NMRK1Q9NWW6 199 aa12.28□□□□□ -0.44
PTPRF-212ENST00000477970 NDE1Q9NXR1 346 aa12.28□□□□□ -0.44
PTPRF-212ENST00000477970 ZDHHC2Q9UIJ5 367 aa12.28□□□□□ -0.44
PTPRF-212ENST00000477970 COL4A6Q14031 1691 aa12.28□□□□□ -0.44
PTPRF-212ENST00000477970 TTC3P53804 2025 aa12.28□□□□□ -0.44
PTPRF-212ENST00000477970 RGSL1A5PLK6 1076 aa12.28□□□□□ -0.44
PTPRF-212ENST00000477970 F5H5T6 163 aa12.28□□□□□ -0.44
PTPRF-212ENST00000477970 H0Y3Z8 333 aa12.28□□□□□ -0.44
PTPRF-212ENST00000477970 S1PR4O95977 384 aa12.28□□□□□ -0.44
PTPRF-212ENST00000477970 GALTP07902 379 aa12.28□□□□□ -0.44
PTPRF-212ENST00000477970 RPSAP08865 295 aaKnown RBP12.28□□□□□ -0.44
PTPRF-212ENST00000477970 BMP8BP34820 402 aa12.28□□□□□ -0.44
PTPRF-212ENST00000477970 PPARGP37231 505 aaPredicted RBP12.28□□□□□ -0.44
PTPRF-212ENST00000477970 CDH4P55283 916 aa12.28□□□□□ -0.44
PTPRF-212ENST00000477970 MGAT5BQ3V5L5 792 aa12.28□□□□□ -0.44
PTPRF-212ENST00000477970 HECTD2Q5U5R9 776 aa12.28□□□□□ -0.44
PTPRF-212ENST00000477970 RSPO2Q6UXX9 243 aaPredicted RBP12.28□□□□□ -0.44
PTPRF-212ENST00000477970 PHTF2Q8N3S3 785 aa12.28□□□□□ -0.44
PTPRF-212ENST00000477970 NRG4Q8WWG1 115 aa12.28□□□□□ -0.44
PTPRF-212ENST00000477970 PABPC5Q96DU9 382 aaKnown RBP12.28□□□□□ -0.44
PTPRF-212ENST00000477970 KLHL5Q96PQ7 755 aa12.28□□□□□ -0.44
PTPRF-212ENST00000477970 OR52B2Q96RD2 323 aa12.28□□□□□ -0.44
PTPRF-212ENST00000477970 TRIB3Q96RU7 358 aa12.28□□□□□ -0.44
PTPRF-212ENST00000477970 OLFM1Q99784 485 aa12.28□□□□□ -0.44
PTPRF-212ENST00000477970 CWH43Q9H720 699 aa12.28□□□□□ -0.44
PTPRF-212ENST00000477970 EML4Q9HC35 981 aaKnown RBP12.28□□□□□ -0.44
PTPRF-212ENST00000477970 MTRRQ9UBK8 725 aa12.28□□□□□ -0.44
PTPRF-212ENST00000477970 UXTQ9UBK9 157 aaPredicted RBP12.28□□□□□ -0.44
PTPRF-212ENST00000477970 CDH22Q9UJ99 828 aa12.28□□□□□ -0.44
PTPRF-212ENST00000477970 DNMT3LQ9UJW3 386 aa12.28□□□□□ -0.44
PTPRF-212ENST00000477970 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.27□□□□□ -0.44
PTPRF-212ENST00000477970 TLR5O60602 858 aa12.27□□□□□ -0.44
PTPRF-212ENST00000477970 PARNO95453 639 aaKnown RBP12.27□□□□□ -0.44
PTPRF-212ENST00000477970 TBX18O95935 607 aa12.27□□□□□ -0.44
PTPRF-212ENST00000477970 NCF2P19878 526 aaPredicted RBP12.27□□□□□ -0.44
PTPRF-212ENST00000477970 OR1E1P30953 314 aa12.27□□□□□ -0.44
PTPRF-212ENST00000477970 LSM12Q3MHD2 195 aaKnown RBP12.27□□□□□ -0.44
PTPRF-212ENST00000477970 RTP2Q5QGT7 225 aa12.27□□□□□ -0.44
PTPRF-212ENST00000477970 CHST9Q7L1S5 443 aa12.27□□□□□ -0.44
PTPRF-212ENST00000477970 BBS5Q8N3I7 341 aa12.27□□□□□ -0.44
PTPRF-212ENST00000477970 SLC25A41Q8N5S1 370 aa12.27□□□□□ -0.44
PTPRF-212ENST00000477970 GPATCH11Q8N954 259 aa12.27□□□□□ -0.44
PTPRF-212ENST00000477970 TXNDC5Q8NBS9 432 aaKnown RBP12.27□□□□□ -0.44
PTPRF-212ENST00000477970 BRSK1Q8TDC3 778 aa12.27□□□□□ -0.44
PTPRF-212ENST00000477970 L3HYPDHQ96EM0 354 aa12.27□□□□□ -0.44
PTPRF-212ENST00000477970 MYCBPQ99417 103 aaPredicted RBP12.27□□□□□ -0.44
PTPRF-212ENST00000477970 PPP1R12CQ9BZL4 782 aa12.27□□□□□ -0.44
PTPRF-212ENST00000477970 A0A1W2PPC1 479 aa12.27□□□□□ -0.45
PTPRF-212ENST00000477970 CCDC78A2IDD5 438 aa12.27□□□□□ -0.45
PTPRF-212ENST00000477970 DCXO43602 365 aa12.27□□□□□ -0.45
PTPRF-212ENST00000477970 ACSL4O60488 711 aa12.27□□□□□ -0.45
PTPRF-212ENST00000477970 ATF6P18850 670 aa12.27□□□□□ -0.45
PTPRF-212ENST00000477970 FDXRP22570 491 aa12.27□□□□□ -0.45
PTPRF-212ENST00000477970 INHBCP55103 352 aa12.27□□□□□ -0.45
PTPRF-212ENST00000477970 MTTPP55157 894 aa12.27□□□□□ -0.45
PTPRF-212ENST00000477970 SLC25A3Q00325 362 aa12.27□□□□□ -0.45
PTPRF-212ENST00000477970 BLMHQ13867 455 aa12.27□□□□□ -0.45
PTPRF-212ENST00000477970 RBM20Q5T481 1227 aaKnown RBP12.27□□□□□ -0.45
PTPRF-212ENST00000477970 C1orf146Q5VVC0 180 aa12.27□□□□□ -0.45
PTPRF-212ENST00000477970 C16orf89Q6UX73 402 aa12.27□□□□□ -0.45
PTPRF-212ENST00000477970 FRMD7Q6ZUT3 714 aa12.27□□□□□ -0.45
PTPRF-212ENST00000477970 DBF4BQ8NFT6 615 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms