RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 TBX4P57082 545 aa4.84□□□□□ -1.63
USP4-209ENST00000475873 KCNK10P57789 538 aa4.84□□□□□ -1.63
USP4-209ENST00000475873 DAOAP59103 153 aa4.84□□□□□ -1.63
USP4-209ENST00000475873 PITX1P78337 314 aaPredicted RBP4.84□□□□□ -1.63
USP4-209ENST00000475873 ADORA2A-AS1P86434 159 aa4.84□□□□□ -1.63
USP4-209ENST00000475873 DNM1Q05193 864 aaKnown RBP4.84□□□□□ -1.63
USP4-209ENST00000475873 SULT2A1Q06520 285 aa4.84□□□□□ -1.63
USP4-209ENST00000475873 ADIGQ0VDE8 80 aa4.84□□□□□ -1.63
USP4-209ENST00000475873 ZNF235Q14590 738 aa4.84□□□□□ -1.63
USP4-209ENST00000475873 NFATC4Q14934 902 aa4.84□□□□□ -1.63
USP4-209ENST00000475873 SNAP47Q5SQN1 464 aa4.84□□□□□ -1.63
USP4-209ENST00000475873 ARTNQ5T4W7 220 aa4.84□□□□□ -1.63
USP4-209ENST00000475873 C22orf39Q6P5X5 142 aa4.84□□□□□ -1.63
USP4-209ENST00000475873 TMEM71Q6P5X7 295 aa4.84□□□□□ -1.63
USP4-209ENST00000475873 C6orf15Q6UXA7 325 aaPredicted RBP4.84□□□□□ -1.63
USP4-209ENST00000475873 LYSMD3Q7Z3D4 306 aa4.84□□□□□ -1.63
USP4-209ENST00000475873 IRF2BP1Q8IU81 584 aa4.84□□□□□ -1.63
USP4-209ENST00000475873 UNC45BQ8IWX7 931 aa4.84□□□□□ -1.63
USP4-209ENST00000475873 SYCP3Q8IZU3 236 aa4.84□□□□□ -1.63
USP4-209ENST00000475873 ZNF808Q8N4W9 903 aaPredicted RBP4.84□□□□□ -1.63
USP4-209ENST00000475873 GRHL3Q8TE85 626 aa4.84□□□□□ -1.63
USP4-209ENST00000475873 CLEC4CQ8WTT0 213 aa4.84□□□□□ -1.63
USP4-209ENST00000475873 RNF139Q8WU17 664 aa4.84□□□□□ -1.63
USP4-209ENST00000475873 PTCD2Q8WV60 388 aaKnown RBP4.84□□□□□ -1.63
USP4-209ENST00000475873 LARP4BQ92615 738 aaKnown RBP4.84□□□□□ -1.63
USP4-209ENST00000475873 HDAC11Q96DB2 347 aa4.84□□□□□ -1.63
USP4-209ENST00000475873 CDK5RAP3Q96JB5 506 aa4.84□□□□□ -1.63
USP4-209ENST00000475873 FOXC2Q99958 501 aa4.84□□□□□ -1.63
USP4-209ENST00000475873 TREX2Q9BQ50 279 aaPredicted RBP4.84□□□□□ -1.63
USP4-209ENST00000475873 ZPBPQ9BS86 351 aa4.84□□□□□ -1.63
USP4-209ENST00000475873 DPEP2Q9H4A9 486 aa4.84□□□□□ -1.63
USP4-209ENST00000475873 ACSS2Q9NR19 701 aa4.84□□□□□ -1.63
USP4-209ENST00000475873 DYRK4Q9NR20 520 aa4.84□□□□□ -1.63
USP4-209ENST00000475873 OLFML3Q9NRN5 406 aa4.84□□□□□ -1.63
USP4-209ENST00000475873 FGF21Q9NSA1 209 aa4.84□□□□□ -1.63
USP4-209ENST00000475873 CCM2LQ9NUG4 571 aaPredicted RBP4.84□□□□□ -1.63
USP4-209ENST00000475873 KLQ9UEF7 1012 aa4.84□□□□□ -1.63
USP4-209ENST00000475873 IL36AQ9UHA7 158 aa4.84□□□□□ -1.63
USP4-209ENST00000475873 USP25Q9UHP3 1055 aa4.84□□□□□ -1.63
USP4-209ENST00000475873 VPS51Q9UID3 782 aa4.84□□□□□ -1.63
USP4-209ENST00000475873 COQ6Q9Y2Z9 468 aa4.84□□□□□ -1.63
USP4-209ENST00000475873 ACTL7AQ9Y615 435 aa4.84□□□□□ -1.63
USP4-209ENST00000475873 HRNRQ86YZ3 2850 aaPredicted RBP4.84□□□□□ -1.63
USP4-209ENST00000475873 NOTCH1P46531 2555 aa4.84□□□□□ -1.64
USP4-209ENST00000475873 DOCK10Q96BY6 2186 aa4.84□□□□□ -1.64
USP4-209ENST00000475873 A0A1B0GUH1 482 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 FRMD3A2A2Y4 597 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 GOLGA6L3A6NEY3 463 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 C16orf96A6NNT2 1141 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 RHPN2P1A8MT19 583 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 MASP2O00187 686 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 POLR1CO15160 346 aaPredicted RBP4.83□□□□□ -1.64
USP4-209ENST00000475873 KCNAB3O43448 404 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 TSPAN6O43657 245 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 ASS1P00966 412 aaKnown RBP4.83□□□□□ -1.64
USP4-209ENST00000475873 TIMP2P16035 220 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 AK4P27144 223 aaPredicted RBP4.83□□□□□ -1.64
USP4-209ENST00000475873 CASP14P31944 242 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 GGCXP38435 758 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 GPR3P46089 330 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 PEX5P50542 639 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 CYP2J2P51589 502 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 SH3BP2P78314 561 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 ADAM8P78325 824 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 DLG4P78352 724 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 CLDN10P78369 228 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 SLC12A1Q13621 1099 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 TRIM29Q14134 588 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 INPP5AQ14642 412 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 LLGL1Q15334 1064 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 KLHL40Q2TBA0 621 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 ZNF394Q53GI3 561 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 C1orf220Q5T0J3 134 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 FAM199XQ6PEV8 388 aaPredicted RBP4.83□□□□□ -1.64
USP4-209ENST00000475873 Q6ZS92 163 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 BIVMQ86UB2 503 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 CHSY1Q86X52 802 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 CEP97Q8IW35 865 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 PARP9Q8IXQ6 854 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 PELI3Q8N2H9 469 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 SLC4A11Q8NBS3 891 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 PLA2G15Q8NCC3 412 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 LRRN4CLQ8ND94 238 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 FBXO18Q8NFZ0 1043 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 OR6K2Q8NGY2 324 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 DQX1Q8TE96 717 aaKnown RBP4.83□□□□□ -1.64
USP4-209ENST00000475873 THAP4Q8WY91 577 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 SLX1AQ9BQ83 275 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 APOOQ9BUR5 198 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 NT5C1AQ9BXI3 368 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 UBXN6Q9BZV1 441 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 BRD8Q9H0E9 1235 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 AGPAT3Q9NRZ7 376 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 ABCC13Q9NSE7 274 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 GPR83Q9NYM4 423 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 TNFRSF10DQ9UBN6 386 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 SLC25A13Q9UJS0 675 aa4.83□□□□□ -1.64
USP4-209ENST00000475873 GTF3C1Q12789 2109 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 A0A0D9SEW6 157 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 SSU72P8A0A1W2PR75 194 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms