RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 FAM45AQ8TCE6 357 aa9.87□□□□□ -0.83
USP39-214ENST00000474572 ADAMTS19Q8TE59 1207 aa9.87□□□□□ -0.83
USP39-214ENST00000474572 AGAP11Q8TF27 550 aa9.87□□□□□ -0.83
USP39-214ENST00000474572 NXNL1Q96CM4 212 aa9.87□□□□□ -0.83
USP39-214ENST00000474572 IFT43Q96FT9 208 aa9.87□□□□□ -0.83
USP39-214ENST00000474572 UBXN10Q96LJ8 280 aa9.87□□□□□ -0.83
USP39-214ENST00000474572 NUDCD1Q96RS6 583 aa9.87□□□□□ -0.83
USP39-214ENST00000474572 OLFM1Q99784 485 aa9.87□□□□□ -0.83
USP39-214ENST00000474572 MRPL57Q9BQC6 102 aaKnown RBP9.87□□□□□ -0.83
USP39-214ENST00000474572 CINPQ9BW66 212 aaPredicted RBP9.87□□□□□ -0.83
USP39-214ENST00000474572 TDRD1Q9BXT4 1180 aaKnown RBP9.87□□□□□ -0.83
USP39-214ENST00000474572 POPDC3Q9HBV1 291 aa9.87□□□□□ -0.83
USP39-214ENST00000474572 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.87□□□□□ -0.83
USP39-214ENST00000474572 GKN1Q9NS71 199 aa9.87□□□□□ -0.83
USP39-214ENST00000474572 TMEM39AQ9NV64 488 aa9.87□□□□□ -0.83
USP39-214ENST00000474572 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.87□□□□□ -0.83
USP39-214ENST00000474572 DNMT3BQ9UBC3 853 aaKnown RBP9.87□□□□□ -0.83
USP39-214ENST00000474572 STK39Q9UEW8 545 aa9.87□□□□□ -0.83
USP39-214ENST00000474572 TAGLN3Q9UI15 199 aa9.87□□□□□ -0.83
USP39-214ENST00000474572 PLA2G4CQ9UP65 541 aa9.87□□□□□ -0.83
USP39-214ENST00000474572 RUVBL2Q9Y230 463 aaKnown RBP9.87□□□□□ -0.83
USP39-214ENST00000474572 APOBEC2Q9Y235 224 aaKnown RBP9.87□□□□□ -0.83
USP39-214ENST00000474572 STK38LQ9Y2H1 464 aa9.87□□□□□ -0.83
USP39-214ENST00000474572 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.87□□□□□ -0.83
USP39-214ENST00000474572 RAP2CQ9Y3L5 183 aa9.87□□□□□ -0.83
USP39-214ENST00000474572 ARIH1Q9Y4X5 557 aaPredicted RBP9.87□□□□□ -0.83
USP39-214ENST00000474572 SCN8AQ9UQD0 1980 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 SLCO1B7G3V0H7 640 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 MATN2O00339 956 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 INSIG1O15503 277 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 MAGEC1O60732 1142 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 PEX11AO75192 247 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 ZMPSTE24O75844 475 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 BAIAP3O94812 1187 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 HSPA4LO95757 839 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 PRLP01236 227 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 LTA4HP09960 611 aaKnown RBP9.86□□□□□ -0.83
USP39-214ENST00000474572 LINC00271P0C7V0 271 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 FDXRP22570 491 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 GLDCP23378 1020 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 ATP5F1P24539 256 aaPredicted RBP9.86□□□□□ -0.83
USP39-214ENST00000474572 PRDX6P30041 224 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 PPM1AP35813 382 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 RAP1GDS1P52306 607 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 ZNF140P52738 457 aaPredicted RBP9.86□□□□□ -0.83
USP39-214ENST00000474572 WDR5P61964 334 aaKnown RBP9.86□□□□□ -0.83
USP39-214ENST00000474572 ARF5P84085 180 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 CREMQ03060 361 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 ZNF460Q14592 562 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 RALGPS1Q5JS13 557 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 HECTD2Q5U5R9 776 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 IL31Q6EBC2 164 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 DNAJB7Q7Z6W7 309 aaPredicted RBP9.86□□□□□ -0.83
USP39-214ENST00000474572 TMPRSS6Q8IU80 811 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 LSMEM2Q8N112 164 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 ENDOVQ8N8Q3 282 aaKnown RBP9.86□□□□□ -0.83
USP39-214ENST00000474572 DIS3LQ8TF46 1054 aaKnown RBP9.86□□□□□ -0.83
USP39-214ENST00000474572 HDAC10Q969S8 669 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 ALG14Q96F25 216 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 ZNF333Q96JL9 665 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 TBATAQ96M53 351 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 LRRC3Q9BY71 257 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 NACA2Q9H009 215 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 ZBP1Q9H171 429 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 EBF2Q9HAK2 575 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 CD248Q9HCU0 757 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 TRPC7Q9HCX4 862 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 ZNF334Q9HCZ1 680 aaPredicted RBP9.86□□□□□ -0.83
USP39-214ENST00000474572 NLE1Q9NVX2 485 aaPredicted RBP9.86□□□□□ -0.83
USP39-214ENST00000474572 ARMCX1Q9P291 453 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 MARCH4Q9P2E8 410 aaPredicted RBP9.86□□□□□ -0.83
USP39-214ENST00000474572 CPSF2Q9P2I0 782 aaKnown RBP9.86□□□□□ -0.83
USP39-214ENST00000474572 ATP11BQ9Y2G3 1177 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 ASB3Q9Y575 518 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 OR51B4Q9Y5P0 310 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 ACTL7AQ9Y615 435 aa9.86□□□□□ -0.83
USP39-214ENST00000474572 PRR5-ARHGAP8B1AHC4 643 aa9.85□□□□□ -0.83
USP39-214ENST00000474572 SPECC1L-ADORA2AF8WAN1 911 aa9.85□□□□□ -0.83
USP39-214ENST00000474572 KIAA0355O15063 1070 aa9.85□□□□□ -0.83
USP39-214ENST00000474572 HDAC3O15379 428 aa9.85□□□□□ -0.83
USP39-214ENST00000474572 GYG2O15488 501 aa9.85□□□□□ -0.83
USP39-214ENST00000474572 GRID2O43424 1007 aa9.85□□□□□ -0.83
USP39-214ENST00000474572 FZD6O60353 706 aa9.85□□□□□ -0.83
USP39-214ENST00000474572 GOT2P00505 430 aaKnown RBP9.85□□□□□ -0.83
USP39-214ENST00000474572 TIMP1P01033 207 aa9.85□□□□□ -0.83
USP39-214ENST00000474572 MYCP01106 439 aaPredicted RBP9.85□□□□□ -0.83
USP39-214ENST00000474572 PENKP01210 267 aaPredicted RBP9.85□□□□□ -0.83
USP39-214ENST00000474572 CHRNGP07510 517 aa9.85□□□□□ -0.83
USP39-214ENST00000474572 RBP1P09455 135 aa9.85□□□□□ -0.83
USP39-214ENST00000474572 MPSTP25325 297 aa9.85□□□□□ -0.83
USP39-214ENST00000474572 GRIA4P48058 902 aa9.85□□□□□ -0.83
USP39-214ENST00000474572 PGGT1BP53609 377 aa9.85□□□□□ -0.83
USP39-214ENST00000474572 EPHB3P54753 998 aa9.85□□□□□ -0.83
USP39-214ENST00000474572 ALDH18A1P54886 795 aaKnown RBP9.85□□□□□ -0.83
USP39-214ENST00000474572 SLC12A2P55011 1212 aa9.85□□□□□ -0.83
USP39-214ENST00000474572 PRAMEP78395 509 aa9.85□□□□□ -0.83
USP39-214ENST00000474572 ARHGAP8P85298 464 aa9.85□□□□□ -0.83
USP39-214ENST00000474572 GALNT1Q10472 559 aaPredicted RBP9.85□□□□□ -0.83
USP39-214ENST00000474572 PRKAA1Q13131 559 aa9.85□□□□□ -0.83
USP39-214ENST00000474572 GALNT3Q14435 633 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms