RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 ALG14Q96F25 216 aa3.29□□□□□ -1.88
CCDC88A-212ENST00000474059 BRD8Q9H0E9 1235 aa3.29□□□□□ -1.88
CCDC88A-212ENST00000474059 PABPC3Q9H361 631 aaKnown RBP3.29□□□□□ -1.88
CCDC88A-212ENST00000474059 SRP68Q9UHB9 627 aaKnown RBP3.29□□□□□ -1.88
CCDC88A-212ENST00000474059 SIX4Q9UIU6 781 aa3.29□□□□□ -1.88
CCDC88A-212ENST00000474059 POU2F3Q9UKI9 436 aa3.29□□□□□ -1.88
CCDC88A-212ENST00000474059 A0A096LPK6 155 aa3.28□□□□□ -1.88
CCDC88A-212ENST00000474059 FAM90A20PA6NIJ5 464 aa3.28□□□□□ -1.88
CCDC88A-212ENST00000474059 C16orf97H3BN30 126 aa3.28□□□□□ -1.88
CCDC88A-212ENST00000474059 SYN3O14994 580 aa3.28□□□□□ -1.88
CCDC88A-212ENST00000474059 NPHP1O15259 732 aa3.28□□□□□ -1.88
CCDC88A-212ENST00000474059 ACTL6BO94805 426 aa3.28□□□□□ -1.88
CCDC88A-212ENST00000474059 SRCP12931 536 aa3.28□□□□□ -1.88
CCDC88A-212ENST00000474059 CYP4B1P13584 511 aa3.28□□□□□ -1.88
CCDC88A-212ENST00000474059 HLA-DOBP13765 273 aa3.28□□□□□ -1.88
CCDC88A-212ENST00000474059 HSD3B1P14060 373 aa3.28□□□□□ -1.88
CCDC88A-212ENST00000474059 MYF6P23409 242 aa3.28□□□□□ -1.88
CCDC88A-212ENST00000474059 TTKP33981 857 aa3.28□□□□□ -1.88
CCDC88A-212ENST00000474059 GPR12P47775 334 aa3.28□□□□□ -1.88
CCDC88A-212ENST00000474059 CCT5P48643 541 aa3.28□□□□□ -1.88
CCDC88A-212ENST00000474059 ARL4CP56559 192 aa3.28□□□□□ -1.88
CCDC88A-212ENST00000474059 AP2B1P63010 937 aa3.28□□□□□ -1.88
CCDC88A-212ENST00000474059 PPFIA1Q13136 1202 aa3.28□□□□□ -1.88
CCDC88A-212ENST00000474059 RPS6KA2Q15349 733 aa3.28□□□□□ -1.88
CCDC88A-212ENST00000474059 EFNB3Q15768 340 aa3.28□□□□□ -1.88
CCDC88A-212ENST00000474059 ME3Q16798 604 aa3.28□□□□□ -1.88
CCDC88A-212ENST00000474059 SLC44A2Q8IWA5 706 aaPredicted RBP3.28□□□□□ -1.88
CCDC88A-212ENST00000474059 CCDC105Q8IYK2 499 aa3.28□□□□□ -1.88
CCDC88A-212ENST00000474059 OR13A1Q8NGR1 328 aa3.28□□□□□ -1.88
CCDC88A-212ENST00000474059 CPT1BQ92523 772 aa3.28□□□□□ -1.88
CCDC88A-212ENST00000474059 LRFN5Q96NI6 719 aa3.28□□□□□ -1.88
CCDC88A-212ENST00000474059 OR1F2PQ96R84 312 aa3.28□□□□□ -1.88
CCDC88A-212ENST00000474059 PIGSQ96S52 555 aa3.28□□□□□ -1.88
CCDC88A-212ENST00000474059 RTKNQ9BST9 563 aa3.28□□□□□ -1.88
CCDC88A-212ENST00000474059 FAM167BQ9BTA0 163 aa3.28□□□□□ -1.88
CCDC88A-212ENST00000474059 PRDM8Q9NQV8 689 aa3.28□□□□□ -1.88
CCDC88A-212ENST00000474059 TMLHEQ9NVH6 421 aa3.28□□□□□ -1.88
CCDC88A-212ENST00000474059 NOL12Q9UGY1 213 aaKnown RBP eCLIP3.28□□□□□ -1.88
CCDC88A-212ENST00000474059 KCNS2Q9ULS6 477 aa3.28□□□□□ -1.88
CCDC88A-212ENST00000474059 PAM16Q9Y3D7 125 aa3.28□□□□□ -1.88
CCDC88A-212ENST00000474059 PSAT1Q9Y617 370 aa3.28□□□□□ -1.88
CCDC88A-212ENST00000474059 A0A0G2JPF8 293 aa3.27□□□□□ -1.89
CCDC88A-212ENST00000474059 HNRNPCL3B7ZW38 293 aa3.27□□□□□ -1.89
CCDC88A-212ENST00000474059 HNRNPRO43390 633 aaKnown RBP3.27□□□□□ -1.89
CCDC88A-212ENST00000474059 HNRNPCL1O60812 293 aaKnown RBP3.27□□□□□ -1.89
CCDC88A-212ENST00000474059 FAM155BO75949 473 aa3.27□□□□□ -1.89
CCDC88A-212ENST00000474059 HNRNPCL4P0DMR1 293 aa3.27□□□□□ -1.89
CCDC88A-212ENST00000474059 CETPP11597 493 aa3.27□□□□□ -1.89
CCDC88A-212ENST00000474059 MCM3P25205 808 aa3.27□□□□□ -1.89
CCDC88A-212ENST00000474059 KRT9P35527 623 aa3.27□□□□□ -1.89
CCDC88A-212ENST00000474059 SKIV2L2P42285 1042 aaKnown RBP3.27□□□□□ -1.89
CCDC88A-212ENST00000474059 RPS6KA3P51812 740 aa3.27□□□□□ -1.89
CCDC88A-212ENST00000474059 MVDP53602 400 aa3.27□□□□□ -1.89
CCDC88A-212ENST00000474059 TNFAIP1Q13829 316 aa3.27□□□□□ -1.89
CCDC88A-212ENST00000474059 ZC2HC1BQ5TFG8 222 aa3.27□□□□□ -1.89
CCDC88A-212ENST00000474059 KLHL24Q6TFL4 600 aa3.27□□□□□ -1.89
CCDC88A-212ENST00000474059 SUSD1Q6UWL2 747 aa3.27□□□□□ -1.89
CCDC88A-212ENST00000474059 RAB11FIP2Q7L804 512 aa3.27□□□□□ -1.89
CCDC88A-212ENST00000474059 MOGAT3Q86VF5 341 aa3.27□□□□□ -1.89
CCDC88A-212ENST00000474059 SETD9Q8NE22 299 aa3.27□□□□□ -1.89
CCDC88A-212ENST00000474059 RUBCNQ92622 972 aa3.27□□□□□ -1.89
CCDC88A-212ENST00000474059 GCC1Q96CN9 775 aa3.27□□□□□ -1.89
CCDC88A-212ENST00000474059 C3orf30Q96M34 536 aa3.27□□□□□ -1.89
CCDC88A-212ENST00000474059 F2RL3Q96RI0 385 aa3.27□□□□□ -1.89
CCDC88A-212ENST00000474059 CSTL1Q9H114 145 aa3.27□□□□□ -1.89
CCDC88A-212ENST00000474059 ATP8A2Q9NTI2 1148 aa3.27□□□□□ -1.89
CCDC88A-212ENST00000474059 SAGE1Q9NXZ1 904 aa3.27□□□□□ -1.89
CCDC88A-212ENST00000474059 C1RLQ9NZP8 487 aa3.27□□□□□ -1.89
CCDC88A-212ENST00000474059 DHDHQ9UQ10 334 aa3.27□□□□□ -1.89
CCDC88A-212ENST00000474059 SNX9Q9Y5X1 595 aa3.27□□□□□ -1.89
CCDC88A-212ENST00000474059 TNFSF12-TNFSF13A0A0A6YY99 330 aa3.26□□□□□ -1.89
CCDC88A-212ENST00000474059 HMX3A6NHT5 357 aa3.26□□□□□ -1.89
CCDC88A-212ENST00000474059 B9A039 149 aa3.26□□□□□ -1.89
CCDC88A-212ENST00000474059 WNT9BO14905 357 aa3.26□□□□□ -1.89
CCDC88A-212ENST00000474059 IRAK2O43187 625 aa3.26□□□□□ -1.89
CCDC88A-212ENST00000474059 STRNO43815 780 aa3.26□□□□□ -1.89
CCDC88A-212ENST00000474059 ATP1A1P05023 1023 aaKnown RBP3.26□□□□□ -1.89
CCDC88A-212ENST00000474059 NR1D1P20393 614 aa3.26□□□□□ -1.89
CCDC88A-212ENST00000474059 PAX3P23760 479 aa3.26□□□□□ -1.89
CCDC88A-212ENST00000474059 CST5P28325 142 aaPredicted RBP3.26□□□□□ -1.89
CCDC88A-212ENST00000474059 PIGAP37287 484 aa3.26□□□□□ -1.89
CCDC88A-212ENST00000474059 CENPAP49450 140 aa3.26□□□□□ -1.89
CCDC88A-212ENST00000474059 PRKAA2P54646 552 aa3.26□□□□□ -1.89
CCDC88A-212ENST00000474059 ECT2LQ008S8 904 aa3.26□□□□□ -1.89
CCDC88A-212ENST00000474059 SLC20A2Q08357 652 aa3.26□□□□□ -1.89
CCDC88A-212ENST00000474059 NFRKBQ6P4R8 1299 aa3.26□□□□□ -1.89
CCDC88A-212ENST00000474059 RRAGAQ7L523 313 aa3.26□□□□□ -1.89
CCDC88A-212ENST00000474059 ANKRD18AQ8IVF6 992 aa3.26□□□□□ -1.89
CCDC88A-212ENST00000474059 DENND6AQ8IWF6 608 aa3.26□□□□□ -1.89
CCDC88A-212ENST00000474059 FTSJ3Q8IY81 847 aaKnown RBP3.26□□□□□ -1.89
CCDC88A-212ENST00000474059 PTGR2Q8N8N7 351 aaPredicted RBP3.26□□□□□ -1.89
CCDC88A-212ENST00000474059 RASSF8Q8NHQ8 419 aa3.26□□□□□ -1.89
CCDC88A-212ENST00000474059 RILPL2Q969X0 211 aa3.26□□□□□ -1.89
CCDC88A-212ENST00000474059 MTBPQ96DY7 904 aa3.26□□□□□ -1.89
CCDC88A-212ENST00000474059 SAYSD1Q9NPB0 183 aa3.26□□□□□ -1.89
CCDC88A-212ENST00000474059 THAP1Q9NVV9 213 aa3.26□□□□□ -1.89
CCDC88A-212ENST00000474059 C9orf78Q9NZ63 289 aaPredicted RBP3.26□□□□□ -1.89
CCDC88A-212ENST00000474059 TAAR2Q9P1P5 351 aa3.26□□□□□ -1.89
CCDC88A-212ENST00000474059 KIF17Q9P2E2 1029 aa3.26□□□□□ -1.89
CCDC88A-212ENST00000474059 FBXO40Q9UH90 709 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms