RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 DUSP10Q9Y6W6 482 aa14.32□□□□□ -0.12
VAMP4-203ENST00000474047 CNOT1A5YKK6 2376 aaKnown RBP14.32□□□□□ -0.12
VAMP4-203ENST00000474047 ANKRD36A6QL64 1941 aa14.32□□□□□ -0.12
VAMP4-203ENST00000474047 LAMA1P25391 3075 aa14.32□□□□□ -0.12
VAMP4-203ENST00000474047 BTNL10A8MVZ5 291 aa14.32□□□□□ -0.12
VAMP4-203ENST00000474047 SPINT1O43278 529 aa14.32□□□□□ -0.12
VAMP4-203ENST00000474047 SOCS5O75159 536 aa14.32□□□□□ -0.12
VAMP4-203ENST00000474047 CPP00450 1065 aa14.32□□□□□ -0.12
VAMP4-203ENST00000474047 KRT10P13645 584 aa14.32□□□□□ -0.12
VAMP4-203ENST00000474047 SIM1P81133 766 aaPredicted RBP14.32□□□□□ -0.12
VAMP4-203ENST00000474047 SEMG2Q02383 582 aa14.32□□□□□ -0.12
VAMP4-203ENST00000474047 TRIP6Q15654 476 aaKnown RBP14.32□□□□□ -0.12
VAMP4-203ENST00000474047 CCDC181Q5TID7 509 aa14.32□□□□□ -0.12
VAMP4-203ENST00000474047 SPATS2Q86XZ4 545 aaKnown RBP14.32□□□□□ -0.12
VAMP4-203ENST00000474047 KATNAL2Q8IYT4 538 aa14.32□□□□□ -0.12
VAMP4-203ENST00000474047 NDUFAF2Q8N183 169 aa14.32□□□□□ -0.12
VAMP4-203ENST00000474047 TEX26Q8N6G2 289 aa14.32□□□□□ -0.12
VAMP4-203ENST00000474047 OR13H1Q8NG92 308 aa14.32□□□□□ -0.12
VAMP4-203ENST00000474047 LENG8Q96PV6 779 aaPredicted RBP14.32□□□□□ -0.12
VAMP4-203ENST00000474047 LGMNQ99538 433 aa14.32□□□□□ -0.12
VAMP4-203ENST00000474047 DESI2Q9BSY9 194 aa14.32□□□□□ -0.12
VAMP4-203ENST00000474047 LACRTQ9GZZ8 138 aa14.32□□□□□ -0.12
VAMP4-203ENST00000474047 SEPT10Q9P0V9 454 aa14.32□□□□□ -0.12
VAMP4-203ENST00000474047 AMACRQ9UHK6 382 aa14.32□□□□□ -0.12
VAMP4-203ENST00000474047 SALL4Q9UJQ4 1053 aa14.32□□□□□ -0.12
VAMP4-203ENST00000474047 SPAARA0A1B0GVQ0 90 aa14.31□□□□□ -0.12
VAMP4-203ENST00000474047 MACROD2A1Z1Q3 448 aa14.31□□□□□ -0.12
VAMP4-203ENST00000474047 A8MX80 341 aa14.31□□□□□ -0.12
VAMP4-203ENST00000474047 RAD51BO15315 384 aa14.31□□□□□ -0.12
VAMP4-203ENST00000474047 PJA2O43164 708 aa14.31□□□□□ -0.12
VAMP4-203ENST00000474047 PCDHGA12O60330 932 aa14.31□□□□□ -0.12
VAMP4-203ENST00000474047 CST8O60676 142 aa14.31□□□□□ -0.12
VAMP4-203ENST00000474047 JCHAINP01591 159 aa14.31□□□□□ -0.12
VAMP4-203ENST00000474047 CR2P20023 1033 aa14.31□□□□□ -0.12
VAMP4-203ENST00000474047 CA4P22748 312 aa14.31□□□□□ -0.12
VAMP4-203ENST00000474047 CETN2P41208 172 aa14.31□□□□□ -0.12
VAMP4-203ENST00000474047 CDKN2BP42772 138 aa14.31□□□□□ -0.12
VAMP4-203ENST00000474047 GRK6P43250 576 aa14.31□□□□□ -0.12
VAMP4-203ENST00000474047 RABIFP47224 123 aa14.31□□□□□ -0.12
VAMP4-203ENST00000474047 LIG3P49916 1009 aa14.31□□□□□ -0.12
VAMP4-203ENST00000474047 THOP1P52888 689 aa14.31□□□□□ -0.12
VAMP4-203ENST00000474047 TFDP3Q5H9I0 405 aa14.31□□□□□ -0.12
VAMP4-203ENST00000474047 ARMC12Q5T9G4 340 aa14.31□□□□□ -0.12
VAMP4-203ENST00000474047 NPNTQ6UXI9 565 aa14.31□□□□□ -0.12
VAMP4-203ENST00000474047 GCNT7Q6ZNI0 430 aa14.31□□□□□ -0.12
VAMP4-203ENST00000474047 ABI3BPQ7Z7G0 1075 aa14.31□□□□□ -0.12
VAMP4-203ENST00000474047 ZSWIM9Q86XI8 627 aa14.31□□□□□ -0.12
VAMP4-203ENST00000474047 GATAD2AQ86YP4 633 aa14.31□□□□□ -0.12
VAMP4-203ENST00000474047 TMEM139Q8IV31 216 aa14.31□□□□□ -0.12
VAMP4-203ENST00000474047 DENND6BQ8NEG7 585 aa14.31□□□□□ -0.12
VAMP4-203ENST00000474047 MAML1Q92585 1016 aa14.31□□□□□ -0.12
VAMP4-203ENST00000474047 FATE1Q969F0 183 aa14.31□□□□□ -0.12
VAMP4-203ENST00000474047 ECHDC3Q96DC8 303 aa14.31□□□□□ -0.12
VAMP4-203ENST00000474047 CDC6Q99741 560 aa14.31□□□□□ -0.12
VAMP4-203ENST00000474047 COQ6Q9Y2Z9 468 aa14.31□□□□□ -0.12
VAMP4-203ENST00000474047 TP53BP1Q12888 1972 aaPredicted RBP14.31□□□□□ -0.12
VAMP4-203ENST00000474047 POM121BA6NF01 834 aa14.3□□□□□ -0.12
VAMP4-203ENST00000474047 KCNK1O00180 336 aa14.3□□□□□ -0.12
VAMP4-203ENST00000474047 TRAFD1O14545 582 aaPredicted RBP14.3□□□□□ -0.12
VAMP4-203ENST00000474047 ELFN1P0C7U0 828 aa14.3□□□□□ -0.12
VAMP4-203ENST00000474047 C6P13671 934 aa14.3□□□□□ -0.12
VAMP4-203ENST00000474047 MMP12P39900 470 aa14.3□□□□□ -0.12
VAMP4-203ENST00000474047 NR2C2P49116 596 aa14.3□□□□□ -0.12
VAMP4-203ENST00000474047 EPHB1P54762 984 aa14.3□□□□□ -0.12
VAMP4-203ENST00000474047 DSC2Q02487 901 aa14.3□□□□□ -0.12
VAMP4-203ENST00000474047 PPIDQ08752 370 aaKnown RBP14.3□□□□□ -0.12
VAMP4-203ENST00000474047 LRRC14Q15048 493 aa14.3□□□□□ -0.12
VAMP4-203ENST00000474047 KYAT3Q6YP21 454 aaKnown RBP14.3□□□□□ -0.12
VAMP4-203ENST00000474047 SYCE1Q8N0S2 351 aa14.3□□□□□ -0.12
VAMP4-203ENST00000474047 EXD1Q8NHP7 514 aa14.3□□□□□ -0.12
VAMP4-203ENST00000474047 P3H4Q92791 437 aa14.3□□□□□ -0.12
VAMP4-203ENST00000474047 BMFQ96LC9 184 aa14.3□□□□□ -0.12
VAMP4-203ENST00000474047 BRD8Q9H0E9 1235 aa14.3□□□□□ -0.12
VAMP4-203ENST00000474047 PHTF1Q9UMS5 762 aa14.3□□□□□ -0.12
VAMP4-203ENST00000474047 RAI2Q9Y5P3 530 aa14.3□□□□□ -0.12
VAMP4-203ENST00000474047 CABIN1Q9Y6J0 2220 aa14.3□□□□□ -0.12
VAMP4-203ENST00000474047 HTRA2O43464 458 aaPredicted RBP14.29□□□□□ -0.12
VAMP4-203ENST00000474047 NRDCO43847 1150 aa14.29□□□□□ -0.12
VAMP4-203ENST00000474047 PTMAP06454 111 aaKnown RBP14.29□□□□□ -0.12
VAMP4-203ENST00000474047 ADRB1P08588 477 aa14.29□□□□□ -0.12
VAMP4-203ENST00000474047 CYP2A6P11509 494 aaPredicted RBP14.29□□□□□ -0.12
VAMP4-203ENST00000474047 TGM2P21980 687 aa14.29□□□□□ -0.12
VAMP4-203ENST00000474047 RXRGP48443 463 aa14.29□□□□□ -0.12
VAMP4-203ENST00000474047 TRAF2Q12933 501 aa14.29□□□□□ -0.12
VAMP4-203ENST00000474047 PDE1CQ14123 709 aaPredicted RBP14.29□□□□□ -0.12
VAMP4-203ENST00000474047 PTK2BQ14289 1009 aa14.29□□□□□ -0.12
VAMP4-203ENST00000474047 ACOX1Q15067 660 aa14.29□□□□□ -0.12
VAMP4-203ENST00000474047 HS1BP3Q53T59 392 aa14.29□□□□□ -0.12
VAMP4-203ENST00000474047 KRT35Q92764 455 aa14.29□□□□□ -0.12
VAMP4-203ENST00000474047 CENPTQ96BT3 561 aa14.29□□□□□ -0.12
VAMP4-203ENST00000474047 KLF6Q99612 283 aaPredicted RBP14.29□□□□□ -0.12
VAMP4-203ENST00000474047 DNAJC28Q9NX36 388 aa14.29□□□□□ -0.12
VAMP4-203ENST00000474047 AMFRQ9UKV5 643 aa14.29□□□□□ -0.12
VAMP4-203ENST00000474047 PCOLCE2Q9UKZ9 415 aa14.29□□□□□ -0.12
VAMP4-203ENST00000474047 PCDHA3Q9Y5H8 950 aa14.29□□□□□ -0.12
VAMP4-203ENST00000474047 PCNX2A6NKB5 2137 aa14.29□□□□□ -0.12
VAMP4-203ENST00000474047 SPTBN2O15020 2390 aa14.29□□□□□ -0.12
VAMP4-203ENST00000474047 CCDC66A2RUB6 948 aa14.29□□□□□ -0.12
VAMP4-203ENST00000474047 GOLGA8CPA6NN73 597 aa14.29□□□□□ -0.12
VAMP4-203ENST00000474047 PGLSO95336 258 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms