RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 MMP10P09238 476 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 PCNAP12004 261 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 MAGP20916 626 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 CASP2P42575 452 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 NR2C2P49116 596 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 STAT5BP51692 787 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 CDH13P55290 713 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 POU6F1Q14863 301 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 POLD3Q15054 466 aaPredicted RBP11.78□□□□□ -0.52
CPSF3-202ENST00000460593 BCL2A1Q16548 175 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 FBXO48Q5FWF7 155 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 MFSD2AQ8NA29 543 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 PDZD8Q8NEN9 1154 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 OR13F1Q8NGS4 319 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 DNAJB14Q8TBM8 379 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 SEPT8Q92599 483 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 MAELQ96JY0 434 aaKnown RBP11.78□□□□□ -0.52
CPSF3-202ENST00000460593 GPR78Q96P69 363 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 SEZ6LQ9BYH1 1024 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 MAP10Q9P2G4 905 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 DNMT3BQ9UBC3 853 aaKnown RBP11.78□□□□□ -0.52
CPSF3-202ENST00000460593 SLC2A6Q9UGQ3 507 aa11.78□□□□□ -0.52
CPSF3-202ENST00000460593 UBR3Q6ZT12 1888 aa11.77□□□□□ -0.52
CPSF3-202ENST00000460593 DPYSL4O14531 572 aa11.77□□□□□ -0.52
CPSF3-202ENST00000460593 JRKO75564 520 aa11.77□□□□□ -0.52
CPSF3-202ENST00000460593 ALDOCP09972 364 aaKnown RBP11.77□□□□□ -0.52
CPSF3-202ENST00000460593 NFKB1P19838 968 aa11.77□□□□□ -0.52
CPSF3-202ENST00000460593 PTPN3P26045 913 aa11.77□□□□□ -0.52
CPSF3-202ENST00000460593 CCT8P50990 548 aa11.77□□□□□ -0.52
CPSF3-202ENST00000460593 BCAT1P54687 386 aa11.77□□□□□ -0.52
CPSF3-202ENST00000460593 TAS2R39P59534 338 aa11.77□□□□□ -0.52
CPSF3-202ENST00000460593 TRAP1Q12931 704 aaKnown RBP11.77□□□□□ -0.52
CPSF3-202ENST00000460593 LAMC2Q13753 1193 aa11.77□□□□□ -0.52
CPSF3-202ENST00000460593 ATP6AP1Q15904 470 aa11.77□□□□□ -0.52
CPSF3-202ENST00000460593 CUZD1Q86UP6 607 aa11.77□□□□□ -0.52
CPSF3-202ENST00000460593 ZBTB8OSQ8IWT0 167 aa11.77□□□□□ -0.52
CPSF3-202ENST00000460593 PSD4Q8NDX1 1056 aa11.77□□□□□ -0.52
CPSF3-202ENST00000460593 ELMO2Q96JJ3 720 aa11.77□□□□□ -0.52
CPSF3-202ENST00000460593 BEGAINQ9BUH8 593 aa11.77□□□□□ -0.52
CPSF3-202ENST00000460593 EHD1Q9H4M9 534 aa11.77□□□□□ -0.52
CPSF3-202ENST00000460593 CMTM6Q9NX76 183 aa11.77□□□□□ -0.52
CPSF3-202ENST00000460593 TMA7Q9Y2S6 64 aaKnown RBP11.77□□□□□ -0.52
CPSF3-202ENST00000460593 ACOT9Q9Y305 439 aa11.77□□□□□ -0.52
CPSF3-202ENST00000460593 TRAF6Q9Y4K3 522 aa11.77□□□□□ -0.52
CPSF3-202ENST00000460593 ZBBXA8MT70 800 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 PSMD11O00231 422 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 SLC22A2O15244 555 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 MYO1DO94832 1006 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 CYP2C9P11712 490 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 CD68P34810 354 aaPredicted RBP11.77□□□□□ -0.53
CPSF3-202ENST00000460593 CAPGP40121 348 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 ZBTB17Q13105 803 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 SQLEQ14534 574 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 OXA1LQ15070 435 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 TARBP2Q15633 366 aaKnown RBP11.77□□□□□ -0.53
CPSF3-202ENST00000460593 PLA2G4EQ3MJ16 856 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 CYHR1Q6ZMK1 362 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 OTOP3Q7RTS5 596 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 CTU1Q7Z7A3 348 aaKnown RBP11.77□□□□□ -0.53
CPSF3-202ENST00000460593 ADGRG5Q8IZF4 528 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 CLIP4Q8N3C7 705 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 RNF139Q8WU17 664 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 C17orf50Q8WW18 174 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 GPR22Q99680 433 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 NAT9Q9BTE0 207 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 NDEL1Q9GZM8 345 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 ATXN3LQ9H3M9 355 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 TBC1D13Q9NVG8 400 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 ATAD3AQ9NVI7 634 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 PTBP2Q9UKA9 531 aaKnown RBP11.77□□□□□ -0.53
CPSF3-202ENST00000460593 LY75O60449 1722 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 ZFC3H1O60293 1989 aaKnown RBP11.77□□□□□ -0.53
CPSF3-202ENST00000460593 FAM95CA0A1B0GW59 222 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 TRPC5OSA6NMA1 111 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 UBFD1O14562 309 aaKnown RBP11.77□□□□□ -0.53
CPSF3-202ENST00000460593 ARPC2O15144 300 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 ESRRBO95718 433 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 HSPA8P11142 646 aaKnown RBP11.77□□□□□ -0.53
CPSF3-202ENST00000460593 CAPN3P20807 821 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 IL10P22301 178 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 UBA1P22314 1058 aaKnown RBP11.77□□□□□ -0.53
CPSF3-202ENST00000460593 PSMA4P25789 261 aaKnown RBP11.77□□□□□ -0.53
CPSF3-202ENST00000460593 AXLP30530 894 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 NR4A2P43354 598 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 RPS9P46781 194 aaKnown RBP11.77□□□□□ -0.53
CPSF3-202ENST00000460593 SULT1E1P49888 294 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 PLA2G16P53816 162 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 GRM1Q13255 1194 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 SLC12A1Q13621 1099 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 PHKG1Q16816 387 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 LY6KQ17RY6 165 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 ZNF789Q5FWF6 425 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 RBM20Q5T481 1227 aaKnown RBP11.77□□□□□ -0.53
CPSF3-202ENST00000460593 XAF1Q6GPH4 301 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 PSTKQ8IV42 348 aaKnown RBP11.77□□□□□ -0.53
CPSF3-202ENST00000460593 SPATA22Q8NHS9 363 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 SH3YL1Q96HL8 342 aaPredicted RBP11.77□□□□□ -0.53
CPSF3-202ENST00000460593 TMEM74Q96NL1 305 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 MIR1-1HGQ9H1L0 117 aa11.77□□□□□ -0.53
CPSF3-202ENST00000460593 RAD21L1Q9H4I0 556 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms