RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 PID1Q7Z2X4 250 aa12.51□□□□□ -0.41
USP40-205ENST00000430158 TRIM69Q86WT6 500 aa12.51□□□□□ -0.41
USP40-205ENST00000430158 DEFB119Q8N690 84 aa12.51□□□□□ -0.41
USP40-205ENST00000430158 C12orf50Q8NA57 414 aaPredicted RBP12.51□□□□□ -0.41
USP40-205ENST00000430158 OR14C36Q8NHC7 312 aa12.51□□□□□ -0.41
USP40-205ENST00000430158 CCDC110Q8TBZ0 833 aa12.51□□□□□ -0.41
USP40-205ENST00000430158 GANCQ8TET4 914 aa12.51□□□□□ -0.41
USP40-205ENST00000430158 MAIP1Q8WWC4 291 aa12.51□□□□□ -0.41
USP40-205ENST00000430158 BIRC7Q96CA5 298 aa12.51□□□□□ -0.41
USP40-205ENST00000430158 LOXL4Q96JB6 756 aa12.51□□□□□ -0.41
USP40-205ENST00000430158 SMIM14Q96QK8 99 aa12.51□□□□□ -0.41
USP40-205ENST00000430158 MCCC1Q96RQ3 725 aaPredicted RBP12.51□□□□□ -0.41
USP40-205ENST00000430158 RBM15Q96T37 977 aaKnown RBP eCLIP12.51□□□□□ -0.41
USP40-205ENST00000430158 MLPHQ9BV36 600 aaPredicted RBP12.51□□□□□ -0.41
USP40-205ENST00000430158 GBA3Q9H227 469 aa12.51□□□□□ -0.41
USP40-205ENST00000430158 PREBQ9HCU5 417 aa12.51□□□□□ -0.41
USP40-205ENST00000430158 PCDH12Q9NPG4 1184 aa12.51□□□□□ -0.41
USP40-205ENST00000430158 SMG5Q9UPR3 1016 aaKnown RBP12.51□□□□□ -0.41
USP40-205ENST00000430158 ITM2BQ9Y287 266 aa12.51□□□□□ -0.41
USP40-205ENST00000430158 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.51□□□□□ -0.41
USP40-205ENST00000430158 SAR1BQ9Y6B6 198 aa12.51□□□□□ -0.41
USP40-205ENST00000430158 ARID1BQ8NFD5 2236 aaPredicted RBP12.5□□□□□ -0.41
USP40-205ENST00000430158 LOC285095A0A1B0GVY8 99 aa12.5□□□□□ -0.41
USP40-205ENST00000430158 PGRMC1O00264 195 aaKnown RBP12.5□□□□□ -0.41
USP40-205ENST00000430158 OPHN1O60890 802 aa12.5□□□□□ -0.41
USP40-205ENST00000430158 ZNF189O75820 626 aaPredicted RBP12.5□□□□□ -0.41
USP40-205ENST00000430158 EPN2O95208 641 aa12.5□□□□□ -0.41
USP40-205ENST00000430158 METTL18O95568 372 aa12.5□□□□□ -0.41
USP40-205ENST00000430158 PRKCGP05129 697 aa12.5□□□□□ -0.41
USP40-205ENST00000430158 GM2AP17900 193 aa12.5□□□□□ -0.41
USP40-205ENST00000430158 STIP1P31948 543 aaKnown RBP12.5□□□□□ -0.41
USP40-205ENST00000430158 ADRA1AP35348 466 aa12.5□□□□□ -0.41
USP40-205ENST00000430158 MMP12P39900 470 aa12.5□□□□□ -0.41
USP40-205ENST00000430158 KCNJ1P48048 391 aa12.5□□□□□ -0.41
USP40-205ENST00000430158 RPL26P61254 145 aaKnown RBP12.5□□□□□ -0.41
USP40-205ENST00000430158 ITKQ08881 620 aa12.5□□□□□ -0.41
USP40-205ENST00000430158 SNX1Q13596 522 aa12.5□□□□□ -0.41
USP40-205ENST00000430158 PTPRRQ15256 657 aa12.5□□□□□ -0.41
USP40-205ENST00000430158 CDKN3Q16667 212 aa12.5□□□□□ -0.41
USP40-205ENST00000430158 ZNF284Q2VY69 593 aa12.5□□□□□ -0.41
USP40-205ENST00000430158 LRRC73Q5JTD7 316 aa12.5□□□□□ -0.41
USP40-205ENST00000430158 KCTD11Q693B1 232 aa12.5□□□□□ -0.41
USP40-205ENST00000430158 FBXL19Q6PCT2 694 aa12.5□□□□□ -0.41
USP40-205ENST00000430158 SYT10Q6XYQ8 523 aa12.5□□□□□ -0.41
USP40-205ENST00000430158 LPCAT2Q7L5N7 544 aa12.5□□□□□ -0.41
USP40-205ENST00000430158 PRUNE1Q86TP1 453 aa12.5□□□□□ -0.41
USP40-205ENST00000430158 TTC7BQ86TV6 843 aa12.5□□□□□ -0.41
USP40-205ENST00000430158 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.5□□□□□ -0.41
USP40-205ENST00000430158 MRGPRX2Q96LB1 330 aa12.5□□□□□ -0.41
USP40-205ENST00000430158 C1QTNF2Q9BXJ5 285 aa12.5□□□□□ -0.41
USP40-205ENST00000430158 AP1M1Q9BXS5 423 aa12.5□□□□□ -0.41
USP40-205ENST00000430158 DYRK4Q9NR20 520 aa12.5□□□□□ -0.41
USP40-205ENST00000430158 TMEM74BQ9NUR3 256 aa12.5□□□□□ -0.41
USP40-205ENST00000430158 KLHL8Q9P2G9 620 aaPredicted RBP12.5□□□□□ -0.41
USP40-205ENST00000430158 RPL26L1Q9UNX3 145 aaKnown RBP12.5□□□□□ -0.41
USP40-205ENST00000430158 CHKBQ9Y259 395 aa12.5□□□□□ -0.41
USP40-205ENST00000430158 NEU2Q9Y3R4 380 aa12.5□□□□□ -0.41
USP40-205ENST00000430158 PCDHB9Q9Y5E1 797 aa12.5□□□□□ -0.41
USP40-205ENST00000430158 ASCC3Q8N3C0 2202 aaKnown RBP12.5□□□□□ -0.41
USP40-205ENST00000430158 CNOT1A5YKK6 2376 aaKnown RBP12.49□□□□□ -0.41
USP40-205ENST00000430158 A0A1W2PQ67 120 aa12.49□□□□□ -0.41
USP40-205ENST00000430158 LRRC72A6NJI9 287 aa12.49□□□□□ -0.41
USP40-205ENST00000430158 TSPAN6O43657 245 aa12.49□□□□□ -0.41
USP40-205ENST00000430158 RNGTTO60942 597 aaKnown RBP12.49□□□□□ -0.41
USP40-205ENST00000430158 NDUFS2O75306 463 aa12.49□□□□□ -0.41
USP40-205ENST00000430158 RHOBTB1O94844 696 aa12.49□□□□□ -0.41
USP40-205ENST00000430158 EPOP01588 193 aa12.49□□□□□ -0.41
USP40-205ENST00000430158 ATXN1LP0C7T5 689 aaKnown RBP12.49□□□□□ -0.41
USP40-205ENST00000430158 ETS1P14921 441 aa12.49□□□□□ -0.41
USP40-205ENST00000430158 TGM1P22735 817 aa12.49□□□□□ -0.41
USP40-205ENST00000430158 ITPKAP23677 461 aa12.49□□□□□ -0.41
USP40-205ENST00000430158 PSMB4P28070 264 aa12.49□□□□□ -0.41
USP40-205ENST00000430158 WNT3AP56704 352 aa12.49□□□□□ -0.41
USP40-205ENST00000430158 CCDC15Q0P6D6 951 aa12.49□□□□□ -0.41
USP40-205ENST00000430158 MSLNQ13421 630 aaPredicted RBP12.49□□□□□ -0.41
USP40-205ENST00000430158 LPAL2Q16609 132 aa12.49□□□□□ -0.41
USP40-205ENST00000430158 QPCTQ16769 361 aa12.49□□□□□ -0.41
USP40-205ENST00000430158 P3H1Q32P28 736 aa12.49□□□□□ -0.41
USP40-205ENST00000430158 PLA2G2CQ5R387 149 aa12.49□□□□□ -0.41
USP40-205ENST00000430158 ARMC12Q5T9G4 340 aa12.49□□□□□ -0.41
USP40-205ENST00000430158 SEL1L3Q68CR1 1132 aa12.49□□□□□ -0.41
USP40-205ENST00000430158 LAIR1Q6GTX8 287 aa12.49□□□□□ -0.41
USP40-205ENST00000430158 PRR23BQ6ZRT6 265 aa12.49□□□□□ -0.41
USP40-205ENST00000430158 DPPA4Q7L190 304 aa12.49□□□□□ -0.41
USP40-205ENST00000430158 HORMAD1Q86X24 394 aa12.49□□□□□ -0.41
USP40-205ENST00000430158 SCRN2Q96FV2 425 aa12.49□□□□□ -0.41
USP40-205ENST00000430158 HSPA12BQ96MM6 686 aa12.49□□□□□ -0.41
USP40-205ENST00000430158 LYSMD1Q96S90 227 aa12.49□□□□□ -0.41
USP40-205ENST00000430158 VPS45Q9NRW7 570 aa12.49□□□□□ -0.41
USP40-205ENST00000430158 HOMER3Q9NSC5 361 aa12.49□□□□□ -0.41
USP40-205ENST00000430158 HAUS2Q9NVX0 235 aa12.49□□□□□ -0.41
USP40-205ENST00000430158 FAM153AQ9UHL3 310 aa12.49□□□□□ -0.41
USP40-205ENST00000430158 PILRBQ9UKJ0 227 aa12.49□□□□□ -0.41
USP40-205ENST00000430158 PHTF1Q9UMS5 762 aa12.49□□□□□ -0.41
USP40-205ENST00000430158 TTLL3Q9Y4R7 772 aa12.49□□□□□ -0.41
USP40-205ENST00000430158 PCDH15Q96QU1 1955 aa12.49□□□□□ -0.41
USP40-205ENST00000430158 TBC1D3DA0A087WVF3 549 aa12.48□□□□□ -0.41
USP40-205ENST00000430158 TBC1D3IA0A087WXS9 549 aa12.48□□□□□ -0.41
USP40-205ENST00000430158 TBC1D3EA0A087X179 549 aa12.48□□□□□ -0.41
USP40-205ENST00000430158 TBC1D3KA0A087X1G2 549 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms