RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 FUBP3Q96I24 572 aaKnown RBP eCLIP9.88□□□□□ -0.83
USP54-205ENST00000424265 FIZ1Q96SL8 496 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 SLC4A5Q9BY07 1137 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 PCDHGC3Q9UN70 934 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 GNB5O14775 395 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 KLRC2P26717 231 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 SLC11A2P49281 568 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 NKX3-2P78367 333 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 RAD51Q06609 339 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 SPCS2Q15005 226 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 TNFAIP8L3Q5GJ75 292 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 LGSNQ5TDP6 509 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 CYP20A1Q6UW02 462 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 YAF2Q8IY57 180 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 S100ZQ8WXG8 99 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 C11orf84Q9BUA3 381 aaPredicted RBP9.88□□□□□ -0.83
USP54-205ENST00000424265 FRMD8Q9BZ67 464 aaPredicted RBP9.88□□□□□ -0.83
USP54-205ENST00000424265 IPO11Q9UI26 975 aaKnown RBP9.88□□□□□ -0.83
USP54-205ENST00000424265 XPO7Q9UIA9 1087 aaKnown RBP9.88□□□□□ -0.83
USP54-205ENST00000424265 NUP50Q9UKX7 468 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 MYH7BA7E2Y1 1941 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 SH3D21A4FU49 640 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 LRRC72A6NJI9 287 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 TM7SF2O76062 418 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 ZNF23P17027 643 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 ACO1P21399 889 aaKnown RBP9.87□□□□□ -0.83
USP54-205ENST00000424265 ALDH18A1P54886 795 aaKnown RBP9.87□□□□□ -0.83
USP54-205ENST00000424265 KRR1Q13601 381 aaKnown RBP9.87□□□□□ -0.83
USP54-205ENST00000424265 MFSD5Q6N075 450 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 SLC39A4Q6P5W5 647 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 PHF21AQ96BD5 680 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 LRRC39Q96DD0 335 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 RBM15Q96T37 977 aaKnown RBP eCLIP9.87□□□□□ -0.83
USP54-205ENST00000424265 MIPEPQ99797 713 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 DCLK3Q9C098 648 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 TLK1Q9UKI8 766 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 FCHO1O14526 889 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 PROSCO94903 275 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 YWHAQP27348 245 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 TKTL1P51854 596 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 TSC22D1Q15714 1073 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 GARNL3Q5VVW2 1013 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 DARS2Q6PI48 645 aaKnown RBP9.87□□□□□ -0.83
USP54-205ENST00000424265 LCLAT1Q6UWP7 414 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 CMTR2Q8IYT2 770 aaKnown RBP9.87□□□□□ -0.83
USP54-205ENST00000424265 METTL25Q8N6Q8 603 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 CCNYL1Q8N7R7 359 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 PDPRQ8NCN5 879 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 VANGL1Q8TAA9 524 aaPredicted RBP9.87□□□□□ -0.83
USP54-205ENST00000424265 LRRC15Q8TF66 581 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 CIDECQ96AQ7 238 aaPredicted RBP9.87□□□□□ -0.83
USP54-205ENST00000424265 ISOC1Q96CN7 298 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 C7orf26Q96N11 449 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 SERPINB11Q96P15 392 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 ADAM7Q9H2U9 754 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 SENP1Q9P0U3 644 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 CLDN25C9JDP6 229 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 EDF1O60869 148 aaKnown RBP9.87□□□□□ -0.83
USP54-205ENST00000424265 CRTAMO95727 393 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 TIMP1P01033 207 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 TPI1P60174 286 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 SLC6A3Q01959 620 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 AMHR2Q16671 573 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 PLA2G4EQ3MJ16 856 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 KCTD20Q7Z5Y7 419 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 BBS7Q8IWZ6 715 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 PALM2Q8IXS6 379 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 PSD4Q8NDX1 1056 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 TPCN2Q8NHX9 752 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 SLC2A14Q8TDB8 520 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 ARMC5Q96C12 935 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 MAP6Q96JE9 813 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 WWP1Q9H0M0 922 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 PTPRHQ9HD43 1115 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 AP3M1Q9Y2T2 418 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 WBP11Q9Y2W2 641 aaKnown RBP9.87□□□□□ -0.83
USP54-205ENST00000424265 TRPM7Q96QT4 1865 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 LOC285556D6RIA3 1793 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 CLOCKO15516 846 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 PSMD3O43242 534 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 IFNB1P01574 187 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 NNMTP40261 264 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 IL12RB1P42701 662 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 CDH6P55285 790 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 BCAR1P56945 870 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 GPR85P60893 370 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 STAT4Q14765 748 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 TCHHL1Q5QJ38 904 aaPredicted RBP9.87□□□□□ -0.83
USP54-205ENST00000424265 TPGS2Q68CL5 300 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 ARHGAP17Q68EM7 881 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 FUT10Q6P4F1 479 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 TAS1R3Q7RTX0 852 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 VPS33AQ96AX1 596 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 SUSD3Q96L08 255 aa9.87□□□□□ -0.83
USP54-205ENST00000424265 DHX35Q9H5Z1 703 aaKnown RBP9.87□□□□□ -0.83
USP54-205ENST00000424265 PDZK1P1A8MUH7 402 aa9.86□□□□□ -0.83
USP54-205ENST00000424265 THRAP10827 490 aa9.86□□□□□ -0.83
USP54-205ENST00000424265 NCAM1P13591 858 aa9.86□□□□□ -0.83
USP54-205ENST00000424265 PRKCAP17252 672 aa9.86□□□□□ -0.83
USP54-205ENST00000424265 PPP3CCP48454 512 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms