RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 AP1G1O43747 822 aa17.1■□□□□ 0.33
COL7A1-202ENST00000422991 GOLGA6DP0CG33 693 aa17.1■□□□□ 0.33
COL7A1-202ENST00000422991 CD6P30203 668 aa17.1■□□□□ 0.33
COL7A1-202ENST00000422991 ACSL1P33121 698 aa17.1■□□□□ 0.33
COL7A1-202ENST00000422991 ADRA1AP35348 466 aa17.1■□□□□ 0.33
COL7A1-202ENST00000422991 POLR2LP62875 67 aaKnown RBP17.1■□□□□ 0.33
COL7A1-202ENST00000422991 SEMA5AQ13591 1074 aa17.1■□□□□ 0.33
COL7A1-202ENST00000422991 PTK6Q13882 451 aa17.1■□□□□ 0.33
COL7A1-202ENST00000422991 DHX34Q14147 1143 aaKnown RBP17.1■□□□□ 0.33
COL7A1-202ENST00000422991 PPP1R7Q15435 360 aa17.1■□□□□ 0.33
COL7A1-202ENST00000422991 KCTD11Q693B1 232 aa17.1■□□□□ 0.33
COL7A1-202ENST00000422991 SYDE1Q6ZW31 735 aaPredicted RBP17.1■□□□□ 0.33
COL7A1-202ENST00000422991 TTC7BQ86TV6 843 aa17.1■□□□□ 0.33
COL7A1-202ENST00000422991 MNS1Q8NEH6 495 aa17.1■□□□□ 0.33
COL7A1-202ENST00000422991 LPCAT1Q8NF37 534 aa17.1■□□□□ 0.33
COL7A1-202ENST00000422991 GAB3Q8WWW8 586 aa17.1■□□□□ 0.33
COL7A1-202ENST00000422991 IFT43Q96FT9 208 aa17.1■□□□□ 0.33
COL7A1-202ENST00000422991 TOE1Q96GM8 510 aaKnown RBP17.1■□□□□ 0.33
COL7A1-202ENST00000422991 BTBD1Q9H0C5 482 aa17.1■□□□□ 0.33
COL7A1-202ENST00000422991 ETNK1Q9HBU6 452 aa17.1■□□□□ 0.33
COL7A1-202ENST00000422991 SGK2Q9HBY8 427 aa17.1■□□□□ 0.33
COL7A1-202ENST00000422991 PCDH12Q9NPG4 1184 aa17.1■□□□□ 0.33
COL7A1-202ENST00000422991 GOLGA6AQ9NYA3 693 aa17.1■□□□□ 0.33
COL7A1-202ENST00000422991 PHTF1Q9UMS5 762 aa17.1■□□□□ 0.33
COL7A1-202ENST00000422991 INVSQ9Y283 1065 aa17.1■□□□□ 0.33
COL7A1-202ENST00000422991 PCDHGA2Q9Y5H1 932 aa17.1■□□□□ 0.33
COL7A1-202ENST00000422991 ZFHX2Q9C0A1 2572 aaPredicted RBP17.09■□□□□ 0.33
COL7A1-202ENST00000422991 LOC285095A0A1B0GVY8 99 aa17.09■□□□□ 0.33
COL7A1-202ENST00000422991 RPP40O75818 363 aaKnown RBP17.09■□□□□ 0.33
COL7A1-202ENST00000422991 SEMA4FO95754 770 aa17.09■□□□□ 0.33
COL7A1-202ENST00000422991 AP2A1O95782 977 aa17.09■□□□□ 0.33
COL7A1-202ENST00000422991 NDST3O95803 873 aa17.09■□□□□ 0.33
COL7A1-202ENST00000422991 EPOP01588 193 aa17.09■□□□□ 0.33
COL7A1-202ENST00000422991 ATXN1LP0C7T5 689 aaKnown RBP17.09■□□□□ 0.33
COL7A1-202ENST00000422991 BCKDHBP21953 392 aa17.09■□□□□ 0.33
COL7A1-202ENST00000422991 XPAP23025 273 aaPredicted RBP17.09■□□□□ 0.33
COL7A1-202ENST00000422991 MMP12P39900 470 aa17.09■□□□□ 0.33
COL7A1-202ENST00000422991 GRIA4P48058 902 aa17.09■□□□□ 0.33
COL7A1-202ENST00000422991 VPS41P49754 854 aa17.09■□□□□ 0.33
COL7A1-202ENST00000422991 GPS1Q13098 491 aa17.09■□□□□ 0.33
COL7A1-202ENST00000422991 GALNT3Q14435 633 aa17.09■□□□□ 0.33
COL7A1-202ENST00000422991 KDELC2Q7Z4H8 507 aa17.09■□□□□ 0.33
COL7A1-202ENST00000422991 JAMLQ86YT9 394 aa17.09■□□□□ 0.33
COL7A1-202ENST00000422991 OR14C36Q8NHC7 312 aa17.09■□□□□ 0.33
COL7A1-202ENST00000422991 MCCC1Q96RQ3 725 aaPredicted RBP17.09■□□□□ 0.33
COL7A1-202ENST00000422991 FICDQ9BVA6 458 aa17.09■□□□□ 0.33
COL7A1-202ENST00000422991 FSD1LQ9BXM9 530 aa17.09■□□□□ 0.33
COL7A1-202ENST00000422991 ADGRE3Q9BY15 652 aa17.09■□□□□ 0.33
COL7A1-202ENST00000422991 KDM4CQ9H3R0 1056 aa17.09■□□□□ 0.33
COL7A1-202ENST00000422991 LRRC40Q9H9A6 602 aa17.09■□□□□ 0.33
COL7A1-202ENST00000422991 GGT7Q9UJ14 662 aa17.09■□□□□ 0.33
COL7A1-202ENST00000422991 ITM2BQ9Y287 266 aa17.09■□□□□ 0.33
COL7A1-202ENST00000422991 PPIL1Q9Y3C6 166 aa17.09■□□□□ 0.33
COL7A1-202ENST00000422991 FADS3Q9Y5Q0 445 aa17.09■□□□□ 0.33
COL7A1-202ENST00000422991 LRRK1Q38SD2 2015 aa17.09■□□□□ 0.33
COL7A1-202ENST00000422991 SPAG17Q6Q759 2223 aa17.09■□□□□ 0.33
COL7A1-202ENST00000422991 DMDP11532 3685 aa17.08■□□□□ 0.33
COL7A1-202ENST00000422991 MYLKQ15746 1914 aa17.08■□□□□ 0.33
COL7A1-202ENST00000422991 A0A0J9YYE9 177 aa17.08■□□□□ 0.32
COL7A1-202ENST00000422991 ERI2A8K979 691 aaKnown RBP17.08■□□□□ 0.32
COL7A1-202ENST00000422991 C10orf142B7Z368 130 aa17.08■□□□□ 0.32
COL7A1-202ENST00000422991 RIOK3O14730 519 aaKnown RBP17.08■□□□□ 0.32
COL7A1-202ENST00000422991 TTI1O43156 1089 aa17.08■□□□□ 0.32
COL7A1-202ENST00000422991 PSMD3O43242 534 aa17.08■□□□□ 0.32
COL7A1-202ENST00000422991 LILRB5O75023 590 aa17.08■□□□□ 0.32
COL7A1-202ENST00000422991 TRBC1P01850 177 aa17.08■□□□□ 0.32
COL7A1-202ENST00000422991 PRKCGP05129 697 aa17.08■□□□□ 0.32
COL7A1-202ENST00000422991 ITIH2P19823 946 aa17.08■□□□□ 0.32
COL7A1-202ENST00000422991 CNR2P34972 360 aa17.08■□□□□ 0.32
COL7A1-202ENST00000422991 EPHB1P54762 984 aa17.08■□□□□ 0.32
COL7A1-202ENST00000422991 ELP6Q0PNE2 266 aa17.08■□□□□ 0.32
COL7A1-202ENST00000422991 SRSF5Q13243 272 aaKnown RBP17.08■□□□□ 0.32
COL7A1-202ENST00000422991 OLIG2Q13516 323 aa17.08■□□□□ 0.32
COL7A1-202ENST00000422991 QPCTQ16769 361 aa17.08■□□□□ 0.32
COL7A1-202ENST00000422991 SIRPB2Q5JXA9 342 aa17.08■□□□□ 0.32
COL7A1-202ENST00000422991 DNTTIP2Q5QJE6 756 aaKnown RBP17.08■□□□□ 0.32
COL7A1-202ENST00000422991 ERAP2Q6P179 960 aa17.08■□□□□ 0.32
COL7A1-202ENST00000422991 ZC3H14Q6PJT7 736 aaKnown RBP17.08■□□□□ 0.32
COL7A1-202ENST00000422991 SLC36A4Q6YBV0 504 aa17.08■□□□□ 0.32
COL7A1-202ENST00000422991 PDCD7Q8N8D1 485 aaKnown RBP17.08■□□□□ 0.32
COL7A1-202ENST00000422991 OR2T34Q8NGX1 318 aa17.08■□□□□ 0.32
COL7A1-202ENST00000422991 CCHCR1Q8TD31 782 aa17.08■□□□□ 0.32
COL7A1-202ENST00000422991 TBL1YQ9BQ87 522 aa17.08■□□□□ 0.32
COL7A1-202ENST00000422991 SEMA4AQ9H3S1 761 aa17.08■□□□□ 0.32
COL7A1-202ENST00000422991 L2HGDHQ9H9P8 463 aa17.08■□□□□ 0.32
COL7A1-202ENST00000422991 PREBQ9HCU5 417 aa17.08■□□□□ 0.32
COL7A1-202ENST00000422991 EIF2B3Q9NR50 452 aaKnown RBP17.08■□□□□ 0.32
COL7A1-202ENST00000422991 TNRC6BQ9UPQ9 1833 aaKnown RBP17.07■□□□□ 0.32
COL7A1-202ENST00000422991 CAPN8A6NHC0 703 aa17.07■□□□□ 0.32
COL7A1-202ENST00000422991 LRRC72A6NJI9 287 aa17.07■□□□□ 0.32
COL7A1-202ENST00000422991 ANKRD66B4E2M5 251 aa17.07■□□□□ 0.32
COL7A1-202ENST00000422991 E7EVH7 732 aa17.07■□□□□ 0.32
COL7A1-202ENST00000422991 HRO43593 1189 aa17.07■□□□□ 0.32
COL7A1-202ENST00000422991 GFRA3O60609 400 aa17.07■□□□□ 0.32
COL7A1-202ENST00000422991 AGTP01019 485 aa17.07■□□□□ 0.32
COL7A1-202ENST00000422991 FGF1P05230 155 aa17.07■□□□□ 0.32
COL7A1-202ENST00000422991 CTPS1P17812 591 aa17.07■□□□□ 0.32
COL7A1-202ENST00000422991 HLA-DPA1P20036 260 aa17.07■□□□□ 0.32
COL7A1-202ENST00000422991 CHRNA4P43681 627 aa17.07■□□□□ 0.32
COL7A1-202ENST00000422991 TNNT3P45378 269 aaPredicted RBP17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms