RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 PAF1Q8N7H5 531 aa13.53□□□□□ -0.24
VCX3A-202ENST00000398729 TEKT4Q8WW24 435 aa13.53□□□□□ -0.24
VCX3A-202ENST00000398729 BTBD6Q96KE9 485 aa13.53□□□□□ -0.24
VCX3A-202ENST00000398729 ZNF599Q96NL3 588 aa13.53□□□□□ -0.24
VCX3A-202ENST00000398729 DUSP23Q9BVJ7 150 aa13.53□□□□□ -0.24
VCX3A-202ENST00000398729 NLGN3Q9NZ94 848 aa13.53□□□□□ -0.24
VCX3A-202ENST00000398729 SEPT3Q9UH03 358 aa13.53□□□□□ -0.24
VCX3A-202ENST00000398729 TOR1BO14657 336 aa13.52□□□□□ -0.25
VCX3A-202ENST00000398729 SCAMP1O15126 338 aa13.52□□□□□ -0.25
VCX3A-202ENST00000398729 ATXN7O15265 892 aaPredicted RBP13.52□□□□□ -0.25
VCX3A-202ENST00000398729 BUB1BO60566 1050 aaPredicted RBP13.52□□□□□ -0.25
VCX3A-202ENST00000398729 AMPD1P23109 780 aa13.52□□□□□ -0.25
VCX3A-202ENST00000398729 HNRNPH3P31942 346 aaKnown RBP13.52□□□□□ -0.25
VCX3A-202ENST00000398729 IGFALSP35858 605 aa13.52□□□□□ -0.25
VCX3A-202ENST00000398729 SSR1P43307 286 aaKnown RBP13.52□□□□□ -0.25
VCX3A-202ENST00000398729 RGRP47804 291 aa13.52□□□□□ -0.25
VCX3A-202ENST00000398729 YPEL5P62699 121 aa13.52□□□□□ -0.25
VCX3A-202ENST00000398729 SLC25A11Q02978 314 aaKnown RBP13.52□□□□□ -0.25
VCX3A-202ENST00000398729 BCL2L1Q07817 233 aa13.52□□□□□ -0.25
VCX3A-202ENST00000398729 TRIM14Q14142 442 aa13.52□□□□□ -0.25
VCX3A-202ENST00000398729 LBRQ14739 615 aaKnown RBP13.52□□□□□ -0.25
VCX3A-202ENST00000398729 TMCO4Q5TGY1 634 aa13.52□□□□□ -0.25
VCX3A-202ENST00000398729 TXNRD3NBQ6F5E7 133 aa13.52□□□□□ -0.25
VCX3A-202ENST00000398729 CAMK1DQ8IU85 385 aa13.52□□□□□ -0.25
VCX3A-202ENST00000398729 CSPG4P5Q96PW8 444 aa13.52□□□□□ -0.25
VCX3A-202ENST00000398729 PSKH2Q96QS6 385 aa13.52□□□□□ -0.25
VCX3A-202ENST00000398729 PCDH12Q9NPG4 1184 aa13.52□□□□□ -0.25
VCX3A-202ENST00000398729 EVA1BQ9NVM1 165 aa13.52□□□□□ -0.25
VCX3A-202ENST00000398729 SPTA1P02549 2419 aa13.52□□□□□ -0.25
VCX3A-202ENST00000398729 PIEZO2Q9H5I5 2752 aa13.51□□□□□ -0.25
VCX3A-202ENST00000398729 ANKRD36A6QL64 1941 aa13.51□□□□□ -0.25
VCX3A-202ENST00000398729 CYSRT1A8MQ03 144 aa13.51□□□□□ -0.25
VCX3A-202ENST00000398729 RIOK3O14730 519 aaKnown RBP13.51□□□□□ -0.25
VCX3A-202ENST00000398729 GIMD1P0DJR0 217 aa13.51□□□□□ -0.25
VCX3A-202ENST00000398729 JUNDP17535 347 aa13.51□□□□□ -0.25
VCX3A-202ENST00000398729 SERPINB6P35237 376 aa13.51□□□□□ -0.25
VCX3A-202ENST00000398729 EIF4A3P38919 411 aaKnown RBP13.51□□□□□ -0.25
VCX3A-202ENST00000398729 SCNN1BP51168 640 aa13.51□□□□□ -0.25
VCX3A-202ENST00000398729 AP1S1P61966 158 aa13.51□□□□□ -0.25
VCX3A-202ENST00000398729 POLR2LP62875 67 aaKnown RBP13.51□□□□□ -0.25
VCX3A-202ENST00000398729 E2F1Q01094 437 aa13.51□□□□□ -0.25
VCX3A-202ENST00000398729 SLC10A7Q0GE19 358 aa13.51□□□□□ -0.25
VCX3A-202ENST00000398729 KRT81Q14533 505 aa13.51□□□□□ -0.25
VCX3A-202ENST00000398729 ZNF235Q14590 738 aa13.51□□□□□ -0.25
VCX3A-202ENST00000398729 LRRC14Q15048 493 aa13.51□□□□□ -0.25
VCX3A-202ENST00000398729 HADHQ16836 314 aaKnown RBP13.51□□□□□ -0.25
VCX3A-202ENST00000398729 HES3Q5TGS1 186 aa13.51□□□□□ -0.25
VCX3A-202ENST00000398729 SPECC1LQ69YQ0 1117 aa13.51□□□□□ -0.25
VCX3A-202ENST00000398729 PCSK4Q6UW60 755 aa13.51□□□□□ -0.25
VCX3A-202ENST00000398729 ZSWIM9Q86XI8 627 aa13.51□□□□□ -0.25
VCX3A-202ENST00000398729 TP53INP2Q8IXH6 220 aa13.51□□□□□ -0.25
VCX3A-202ENST00000398729 TP53I13Q8NBR0 393 aaPredicted RBP13.51□□□□□ -0.25
VCX3A-202ENST00000398729 ZNF548Q8NEK5 533 aaPredicted RBP13.51□□□□□ -0.25
VCX3A-202ENST00000398729 ZNF564Q8TBZ8 553 aaPredicted RBP13.51□□□□□ -0.25
VCX3A-202ENST00000398729 NSMCE1Q8WV22 266 aa13.51□□□□□ -0.25
VCX3A-202ENST00000398729 BTN2A2Q8WVV5 523 aa13.51□□□□□ -0.25
VCX3A-202ENST00000398729 CAAP1Q9H8G2 361 aa13.51□□□□□ -0.25
VCX3A-202ENST00000398729 PCDH18Q9HCL0 1135 aa13.51□□□□□ -0.25
VCX3A-202ENST00000398729 CTTNBP2NLQ9P2B4 639 aa13.51□□□□□ -0.25
VCX3A-202ENST00000398729 RCOR3Q9P2K3 495 aaPredicted RBP13.51□□□□□ -0.25
VCX3A-202ENST00000398729 ATP8A1Q9Y2Q0 1164 aa13.51□□□□□ -0.25
VCX3A-202ENST00000398729 CSNK1G3Q9Y6M4 447 aa13.51□□□□□ -0.25
VCX3A-202ENST00000398729 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.5□□□□□ -0.25
VCX3A-202ENST00000398729 K7ESM1 405 aa13.5□□□□□ -0.25
VCX3A-202ENST00000398729 MUSKO15146 869 aa13.5□□□□□ -0.25
VCX3A-202ENST00000398729 AQP9O43315 295 aa13.5□□□□□ -0.25
VCX3A-202ENST00000398729 LZTS3O60299 673 aaPredicted RBP13.5□□□□□ -0.25
VCX3A-202ENST00000398729 NEBLO76041 1014 aa13.5□□□□□ -0.25
VCX3A-202ENST00000398729 TPM1P09493 284 aa13.5□□□□□ -0.25
VCX3A-202ENST00000398729 H2AFZP0C0S5 128 aa13.5□□□□□ -0.25
VCX3A-202ENST00000398729 CKMT1AP12532 417 aa13.5□□□□□ -0.25
VCX3A-202ENST00000398729 C6P13671 934 aa13.5□□□□□ -0.25
VCX3A-202ENST00000398729 PLA2G2AP14555 144 aa13.5□□□□□ -0.25
VCX3A-202ENST00000398729 HSPA9P38646 679 aaKnown RBP13.5□□□□□ -0.25
VCX3A-202ENST00000398729 MMP12P39900 470 aa13.5□□□□□ -0.25
VCX3A-202ENST00000398729 LIG3P49916 1009 aa13.5□□□□□ -0.25
VCX3A-202ENST00000398729 DUSP3P51452 185 aaPredicted RBP13.5□□□□□ -0.25
VCX3A-202ENST00000398729 CDH6P55285 790 aa13.5□□□□□ -0.25
VCX3A-202ENST00000398729 SEMG2Q02383 582 aa13.5□□□□□ -0.25
VCX3A-202ENST00000398729 EIF2B5Q13144 721 aaKnown RBP13.5□□□□□ -0.25
VCX3A-202ENST00000398729 TARDBPQ13148 414 aaKnown RBP eCLIP13.5□□□□□ -0.25
VCX3A-202ENST00000398729 IRF4Q15306 451 aa13.5□□□□□ -0.25
VCX3A-202ENST00000398729 SLC18A3Q16572 532 aa13.5□□□□□ -0.25
VCX3A-202ENST00000398729 TSR1Q2NL82 804 aaKnown RBP13.5□□□□□ -0.25
VCX3A-202ENST00000398729 TPRG1LQ5T0D9 272 aa13.5□□□□□ -0.25
VCX3A-202ENST00000398729 KDM7AQ6ZMT4 941 aa13.5□□□□□ -0.25
VCX3A-202ENST00000398729 MACC1Q6ZN28 852 aa13.5□□□□□ -0.25
VCX3A-202ENST00000398729 H2AFVQ71UI9 128 aa13.5□□□□□ -0.25
VCX3A-202ENST00000398729 BBS5Q8N3I7 341 aa13.5□□□□□ -0.25
VCX3A-202ENST00000398729 ZNF843Q8N446 348 aa13.5□□□□□ -0.25
VCX3A-202ENST00000398729 ATPAF2Q8N5M1 289 aa13.5□□□□□ -0.25
VCX3A-202ENST00000398729 FAM181AQ8N9Y4 354 aa13.5□□□□□ -0.25
VCX3A-202ENST00000398729 OR8K1Q8NGG5 319 aa13.5□□□□□ -0.25
VCX3A-202ENST00000398729 CTNNBL1Q8WYA6 563 aaPredicted RBP13.5□□□□□ -0.25
VCX3A-202ENST00000398729 ECHDC3Q96DC8 303 aa13.5□□□□□ -0.25
VCX3A-202ENST00000398729 APOLD1Q96LR9 279 aa13.5□□□□□ -0.25
VCX3A-202ENST00000398729 TSPY26PQ9H489 355 aa13.5□□□□□ -0.25
VCX3A-202ENST00000398729 DEF6Q9H4E7 631 aa13.5□□□□□ -0.25
VCX3A-202ENST00000398729 USP29Q9HBJ7 922 aa13.5□□□□□ -0.25
VCX3A-202ENST00000398729 MBNL1Q9NR56 388 aaKnown RBP13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms