RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 CAAP1Q9H8G2 361 aa12.79□□□□□ -0.36
SHMT1-205ENST00000395684 FBRSL1Q9HCM7 1045 aaKnown RBP12.79□□□□□ -0.36
SHMT1-205ENST00000395684 MRPL40Q9NQ50 206 aaKnown RBP12.79□□□□□ -0.36
SHMT1-205ENST00000395684 H3BNH8 94 aa12.78□□□□□ -0.36
SHMT1-205ENST00000395684 MRASO14807 208 aa12.78□□□□□ -0.36
SHMT1-205ENST00000395684 MATN3O15232 486 aa12.78□□□□□ -0.36
SHMT1-205ENST00000395684 NRP2O60462 931 aa12.78□□□□□ -0.36
SHMT1-205ENST00000395684 GPC4O75487 556 aa12.78□□□□□ -0.36
SHMT1-205ENST00000395684 FAM163BP0C2L3 166 aa12.78□□□□□ -0.36
SHMT1-205ENST00000395684 CCDC166P0CW27 439 aa12.78□□□□□ -0.36
SHMT1-205ENST00000395684 TSPAN8P19075 237 aa12.78□□□□□ -0.36
SHMT1-205ENST00000395684 KCNC1P48547 511 aa12.78□□□□□ -0.36
SHMT1-205ENST00000395684 SEPT6Q14141 434 aa12.78□□□□□ -0.36
SHMT1-205ENST00000395684 MAPRE2Q15555 327 aa12.78□□□□□ -0.36
SHMT1-205ENST00000395684 KIAA0930Q6ICG6 404 aaPredicted RBP12.78□□□□□ -0.36
SHMT1-205ENST00000395684 ZNF467Q7Z7K2 595 aaPredicted RBP12.78□□□□□ -0.36
SHMT1-205ENST00000395684 DPP9Q86TI2 863 aa12.78□□□□□ -0.36
SHMT1-205ENST00000395684 CCDC117Q8IWD4 279 aaPredicted RBP12.78□□□□□ -0.36
SHMT1-205ENST00000395684 C3orf58Q8NDZ4 430 aa12.78□□□□□ -0.36
SHMT1-205ENST00000395684 DQX1Q8TE96 717 aaKnown RBP12.78□□□□□ -0.36
SHMT1-205ENST00000395684 GAB3Q8WWW8 586 aa12.78□□□□□ -0.36
SHMT1-205ENST00000395684 FAR2Q96K12 515 aa12.78□□□□□ -0.36
SHMT1-205ENST00000395684 RANBP9Q96S59 729 aa12.78□□□□□ -0.36
SHMT1-205ENST00000395684 LIN28AQ9H9Z2 209 aaKnown RBP12.78□□□□□ -0.36
SHMT1-205ENST00000395684 EML4Q9HC35 981 aaKnown RBP12.78□□□□□ -0.36
SHMT1-205ENST00000395684 SPON1Q9HCB6 807 aa12.78□□□□□ -0.36
SHMT1-205ENST00000395684 ENTPD7Q9NQZ7 604 aa12.78□□□□□ -0.36
SHMT1-205ENST00000395684 DUS2Q9NX74 493 aaKnown RBP12.78□□□□□ -0.36
SHMT1-205ENST00000395684 IPO11Q9UI26 975 aaKnown RBP12.78□□□□□ -0.36
SHMT1-205ENST00000395684 DNAH12Q6ZR08 3092 aa12.78□□□□□ -0.36
SHMT1-205ENST00000395684 HTRA2O43464 458 aaPredicted RBP12.78□□□□□ -0.36
SHMT1-205ENST00000395684 TIPRLO75663 272 aa12.78□□□□□ -0.36
SHMT1-205ENST00000395684 F2P00734 622 aa12.78□□□□□ -0.36
SHMT1-205ENST00000395684 RPL10P27635 214 aaKnown RBP12.78□□□□□ -0.36
SHMT1-205ENST00000395684 ALDH3B2P48448 385 aa12.78□□□□□ -0.36
SHMT1-205ENST00000395684 LHX1P48742 406 aa12.78□□□□□ -0.36
SHMT1-205ENST00000395684 CLCNKBP51801 687 aa12.78□□□□□ -0.36
SHMT1-205ENST00000395684 KPNA2P52292 529 aaKnown RBP12.78□□□□□ -0.36
SHMT1-205ENST00000395684 ADAM17P78536 824 aa12.78□□□□□ -0.36
SHMT1-205ENST00000395684 PSMD5Q16401 504 aa12.78□□□□□ -0.36
SHMT1-205ENST00000395684 ARTNQ5T4W7 220 aa12.78□□□□□ -0.36
SHMT1-205ENST00000395684 TWF2Q6IBS0 349 aaKnown RBP12.78□□□□□ -0.36
SHMT1-205ENST00000395684 FUNDC1Q8IVP5 155 aa12.78□□□□□ -0.36
SHMT1-205ENST00000395684 NLGN2Q8NFZ4 835 aa12.78□□□□□ -0.36
SHMT1-205ENST00000395684 PTCD2Q8WV60 388 aaKnown RBP12.78□□□□□ -0.36
SHMT1-205ENST00000395684 MAML3Q96JK9 1138 aa12.78□□□□□ -0.36
SHMT1-205ENST00000395684 FSD1LQ9BXM9 530 aa12.78□□□□□ -0.36
SHMT1-205ENST00000395684 GSTO2Q9H4Y5 243 aa12.78□□□□□ -0.36
SHMT1-205ENST00000395684 MRM3Q9HC36 420 aaKnown RBP12.78□□□□□ -0.36
SHMT1-205ENST00000395684 RBM22Q9NW64 420 aaKnown RBP eCLIP12.78□□□□□ -0.36
SHMT1-205ENST00000395684 ARHGEF38Q9NXL2 777 aa12.78□□□□□ -0.36
SHMT1-205ENST00000395684 CROTQ9UKG9 612 aa12.78□□□□□ -0.36
SHMT1-205ENST00000395684 CNOT6Q9ULM6 557 aaKnown RBP12.78□□□□□ -0.36
SHMT1-205ENST00000395684 MTF2Q9Y483 593 aaPredicted RBP12.78□□□□□ -0.36
SHMT1-205ENST00000395684 TRAF6Q9Y4K3 522 aa12.78□□□□□ -0.36
SHMT1-205ENST00000395684 HEMK1Q9Y5R4 338 aaPredicted RBP12.78□□□□□ -0.36
SHMT1-205ENST00000395684 PAMP19021 973 aa12.77□□□□□ -0.36
SHMT1-205ENST00000395684 SLC7A2P52569 658 aa12.77□□□□□ -0.36
SHMT1-205ENST00000395684 NDST2P52849 883 aa12.77□□□□□ -0.36
SHMT1-205ENST00000395684 EMP3P54852 163 aa12.77□□□□□ -0.36
SHMT1-205ENST00000395684 GEMP55040 296 aa12.77□□□□□ -0.36
SHMT1-205ENST00000395684 NHSL2Q5HYW2 709 aa12.77□□□□□ -0.36
SHMT1-205ENST00000395684 AGAP9Q5VTM2 703 aa12.77□□□□□ -0.36
SHMT1-205ENST00000395684 LARP4Q71RC2 724 aaKnown RBP eCLIP12.77□□□□□ -0.36
SHMT1-205ENST00000395684 CANT1Q8WVQ1 401 aa12.77□□□□□ -0.36
SHMT1-205ENST00000395684 PPWD1Q96BP3 646 aaKnown RBP12.77□□□□□ -0.36
SHMT1-205ENST00000395684 LRCH3Q96II8 777 aa12.77□□□□□ -0.36
SHMT1-205ENST00000395684 UBXN10Q96LJ8 280 aa12.77□□□□□ -0.36
SHMT1-205ENST00000395684 C3orf30Q96M34 536 aa12.77□□□□□ -0.36
SHMT1-205ENST00000395684 PHF12Q96QT6 1004 aa12.77□□□□□ -0.36
SHMT1-205ENST00000395684 HAUS8Q9BT25 410 aa12.77□□□□□ -0.36
SHMT1-205ENST00000395684 SLC25A23Q9BV35 468 aa12.77□□□□□ -0.36
SHMT1-205ENST00000395684 TIMMDC1Q9NPL8 285 aa12.77□□□□□ -0.36
SHMT1-205ENST00000395684 RSL24D1Q9UHA3 163 aaKnown RBP12.77□□□□□ -0.36
SHMT1-205ENST00000395684 FNDC1Q4ZHG4 1894 aaPredicted RBP12.77□□□□□ -0.37
SHMT1-205ENST00000395684 MYLKQ15746 1914 aa12.77□□□□□ -0.37
SHMT1-205ENST00000395684 ZNF839A8K0R7 811 aa12.77□□□□□ -0.37
SHMT1-205ENST00000395684 SOCS2O14508 198 aa12.77□□□□□ -0.37
SHMT1-205ENST00000395684 LTA4HP09960 611 aaKnown RBP12.77□□□□□ -0.37
SHMT1-205ENST00000395684 PRKCQQ04759 706 aa12.77□□□□□ -0.37
SHMT1-205ENST00000395684 EIF4EBP2Q13542 120 aaPredicted RBP12.77□□□□□ -0.37
SHMT1-205ENST00000395684 PCSK7Q16549 785 aa12.77□□□□□ -0.37
SHMT1-205ENST00000395684 SAMD4BQ5PRF9 694 aaKnown RBP12.77□□□□□ -0.37
SHMT1-205ENST00000395684 FAM45BPQ6NSW5 357 aa12.77□□□□□ -0.37
SHMT1-205ENST00000395684 TMEM207Q6UWW9 146 aa12.77□□□□□ -0.37
SHMT1-205ENST00000395684 ZBTB49Q6ZSB9 765 aa12.77□□□□□ -0.37
SHMT1-205ENST00000395684 RETREG3Q86VR2 466 aa12.77□□□□□ -0.37
SHMT1-205ENST00000395684 FAM45AQ8TCE6 357 aa12.77□□□□□ -0.37
SHMT1-205ENST00000395684 SH3RF2Q8TEC5 729 aa12.77□□□□□ -0.37
SHMT1-205ENST00000395684 CCDC126Q96EE4 140 aa12.77□□□□□ -0.37
SHMT1-205ENST00000395684 SMARCD1Q96GM5 515 aa12.77□□□□□ -0.37
SHMT1-205ENST00000395684 TINF2Q9BSI4 451 aa12.77□□□□□ -0.37
SHMT1-205ENST00000395684 ABHD16BQ9H3Z7 469 aa12.77□□□□□ -0.37
SHMT1-205ENST00000395684 CSNK1G1Q9HCP0 422 aa12.77□□□□□ -0.37
SHMT1-205ENST00000395684 IRAK4Q9NWZ3 460 aa12.77□□□□□ -0.37
SHMT1-205ENST00000395684 MYRFQ9Y2G1 1151 aa12.77□□□□□ -0.37
SHMT1-205ENST00000395684 PTCH2Q9Y6C5 1203 aa12.77□□□□□ -0.37
SHMT1-205ENST00000395684 hCG_2014768A0A024R1R8 64 aa12.76□□□□□ -0.37
SHMT1-205ENST00000395684 ALDOCP09972 364 aaKnown RBP12.76□□□□□ -0.37
SHMT1-205ENST00000395684 LEPRP48357 1165 aaKnown RBP12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms