RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 SMSP52788 366 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 RHOAP61586 193 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 GABREP78334 506 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 SF3B4Q15427 424 aaKnown RBP eCLIP8.17□□□□□ -1.1
LIMS1-203ENST00000393310 SMU1Q2TAY7 513 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 VWA3BQ502W6 1294 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 ZNF425Q6IV72 752 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 DUS1LQ6P1R4 473 aaKnown RBP8.17□□□□□ -1.1
LIMS1-203ENST00000393310 SCYL2Q6P3W7 929 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 PIM3Q86V86 326 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 NECAB1Q8N987 351 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 OXER1Q8TDS5 423 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 LENG9Q96B70 501 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 CXorf40BQ96DE9 158 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 IP6K3Q96PC2 410 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 RABGEF1Q9UJ41 708 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 SESN1Q9Y6P5 492 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 MYO7AQ13402 2215 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 ARHGAP42A6NI28 874 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 C16orf96A6NNT2 1141 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 PDZK1P1A8MUH7 402 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 MTSS1O43312 755 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 HEXBP07686 556 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 SRPRAP08240 638 aaKnown RBP8.17□□□□□ -1.1
LIMS1-203ENST00000393310 SLCO1A2P46721 670 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 LILRA4P59901 499 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 ADAM17P78536 824 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 TYRO3Q06418 890 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 CKAP4Q07065 602 aaKnown RBP8.17□□□□□ -1.1
LIMS1-203ENST00000393310 BST2Q10589 180 aaKnown RBP8.17□□□□□ -1.1
LIMS1-203ENST00000393310 MAPRE2Q15555 327 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 ARHGAP40Q5TG30 622 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 MBLAC2Q68D91 279 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 BEND4Q6ZU67 534 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 USP30Q70CQ3 517 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 DEPDC4Q8N2C3 294 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 ANKRD53Q8N9V6 530 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 BCL7CQ8WUZ0 217 aaPredicted RBP8.17□□□□□ -1.1
LIMS1-203ENST00000393310 ADAMTS14Q8WXS8 1223 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 FGF14Q92915 247 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 PDLIM2Q96JY6 352 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 NLNQ9BYT8 704 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 NRSN2Q9GZP1 204 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 SIK2Q9H0K1 926 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 DUSP15Q9H1R2 295 aaPredicted RBP8.17□□□□□ -1.1
LIMS1-203ENST00000393310 CYP4F12Q9HCS2 524 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 SLC35C2Q9NQQ7 365 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 AGPAT3Q9NRZ7 376 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 DNAJC11Q9NVH1 559 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 STOML1Q9UBI4 398 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 MID2Q9UJV3 735 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 PVALEFA0A1B0GWK0 134 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 FFAR2O15552 330 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 CNOT3O75175 753 aaKnown RBP8.16□□□□□ -1.1
LIMS1-203ENST00000393310 CILPO75339 1184 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 IPO13O94829 963 aaKnown RBP8.16□□□□□ -1.1
LIMS1-203ENST00000393310 CYP4F2P78329 520 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 SPDYAQ5MJ70 313 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 TAS2R42Q7RTR8 314 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 TBC1D1Q86TI0 1168 aaPredicted RBP8.16□□□□□ -1.1
LIMS1-203ENST00000393310 RASGRP3Q8IV61 690 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 AGBL5Q8NDL9 886 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 S100PBPQ96BU1 408 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 FRMD6Q96NE9 622 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 CCNL2Q96S94 520 aaPredicted RBP8.16□□□□□ -1.1
LIMS1-203ENST00000393310 TTYH3Q9C0H2 523 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 CLPBQ9H078 707 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 NUP62CLQ9H1M0 184 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 EPB41L1Q9H4G0 881 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 SP140LQ9H930 580 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 MARCH7Q9H992 704 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 COQ3Q9NZJ6 369 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 ANAPC2Q9UJX6 822 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 FAM221BA6H8Z2 402 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 TMEM191CA6NGB0 347 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 ZSCAN5BA6NJL1 495 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 A8MVJ9 347 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 KPNA5O15131 536 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 POLR2DO15514 142 aaKnown RBP8.16□□□□□ -1.1
LIMS1-203ENST00000393310 DPM1O60762 260 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 GJB2P29033 226 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 SERPINA4P29622 427 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 RAB15P59190 212 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 MCL1Q07820 350 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 NIPAL4Q0D2K0 466 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 ADAM9Q13443 819 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 EEF1DP3Q658K8 133 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 FAM122CQ6P4D5 195 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 TRAF7Q6Q0C0 670 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 PAOXQ6QHF9 649 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 CYP4V2Q6ZWL3 525 aaPredicted RBP8.16□□□□□ -1.1
LIMS1-203ENST00000393310 TBC1D21Q8IYX1 336 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 C9orf43Q8TAL5 461 aaPredicted RBP8.16□□□□□ -1.1
LIMS1-203ENST00000393310 MCOLN3Q8TDD5 553 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 HEXDCQ8WVB3 486 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 PRR11Q96HE9 360 aaPredicted RBP8.16□□□□□ -1.1
LIMS1-203ENST00000393310 ZPBPQ9BS86 351 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 LSG1Q9H089 658 aaKnown RBP8.16□□□□□ -1.1
LIMS1-203ENST00000393310 SCPEP1Q9HB40 452 aa8.16□□□□□ -1.1
LIMS1-203ENST00000393310 PDE7BQ9NP56 450 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms