RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 MTTPP55157 894 aa13.46□□□□□ -0.25
CCDC3-202ENST00000378839 POU4F1Q01851 419 aa13.46□□□□□ -0.25
CCDC3-202ENST00000378839 SULT2A1Q06520 285 aa13.46□□□□□ -0.25
CCDC3-202ENST00000378839 TRIP4Q15650 581 aaPredicted RBP13.46□□□□□ -0.25
CCDC3-202ENST00000378839 NFE2Q16621 373 aaPredicted RBP13.46□□□□□ -0.25
CCDC3-202ENST00000378839 SH2D4BQ5SQS7 431 aa13.46□□□□□ -0.25
CCDC3-202ENST00000378839 HECTD2Q5U5R9 776 aa13.46□□□□□ -0.25
CCDC3-202ENST00000378839 LPCAT4Q643R3 524 aa13.46□□□□□ -0.25
CCDC3-202ENST00000378839 ZNF549Q6P9A3 640 aa13.46□□□□□ -0.25
CCDC3-202ENST00000378839 BTN2A3PQ96KV6 586 aa13.46□□□□□ -0.25
CCDC3-202ENST00000378839 SEPT5Q99719 369 aaPredicted RBP13.46□□□□□ -0.25
CCDC3-202ENST00000378839 MRPL57Q9BQC6 102 aaKnown RBP13.46□□□□□ -0.25
CCDC3-202ENST00000378839 SP110Q9HB58 689 aa13.46□□□□□ -0.25
CCDC3-202ENST00000378839 A8MT66 165 aa13.46□□□□□ -0.26
CCDC3-202ENST00000378839 SDHDO14521 159 aa13.46□□□□□ -0.26
CCDC3-202ENST00000378839 CCDC166P0CW27 439 aa13.46□□□□□ -0.26
CCDC3-202ENST00000378839 MAGEA11P43364 429 aa13.46□□□□□ -0.26
CCDC3-202ENST00000378839 C1QTNF8P60827 252 aa13.46□□□□□ -0.26
CCDC3-202ENST00000378839 PFKPQ01813 784 aa13.46□□□□□ -0.26
CCDC3-202ENST00000378839 SERINC3Q13530 473 aa13.46□□□□□ -0.26
CCDC3-202ENST00000378839 LRRC36Q1X8D7 754 aa13.46□□□□□ -0.26
CCDC3-202ENST00000378839 TSNAXIP1Q2TAA8 658 aa13.46□□□□□ -0.26
CCDC3-202ENST00000378839 CYHR1Q6ZMK1 362 aa13.46□□□□□ -0.26
CCDC3-202ENST00000378839 ZNF354CQ86Y25 554 aa13.46□□□□□ -0.26
CCDC3-202ENST00000378839 LRRC49Q8IUZ0 686 aa13.46□□□□□ -0.26
CCDC3-202ENST00000378839 SNX31Q8N9S9 440 aa13.46□□□□□ -0.26
CCDC3-202ENST00000378839 SLC26A7Q8TE54 656 aa13.46□□□□□ -0.26
CCDC3-202ENST00000378839 HHIPL1Q96JK4 782 aa13.46□□□□□ -0.26
CCDC3-202ENST00000378839 RANBP9Q96S59 729 aa13.46□□□□□ -0.26
CCDC3-202ENST00000378839 ZNF184Q99676 751 aaPredicted RBP13.46□□□□□ -0.26
CCDC3-202ENST00000378839 ARHGAP26Q9UNA1 814 aa13.46□□□□□ -0.26
CCDC3-202ENST00000378839 COPG1Q9Y678 874 aaKnown RBP13.46□□□□□ -0.26
CCDC3-202ENST00000378839 TBC1D4O60343 1298 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 ATF6P18850 670 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 TSPAN8P19075 237 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 HDCP19113 662 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 POLD2P49005 469 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 SLC11A1P49279 550 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 NUDT2P50583 147 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 AP2B1P63010 937 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 TNK2Q07912 1038 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 DUSP4Q13115 394 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 GALNT3Q14435 633 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 PPP1R3AQ16821 1122 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 FSCBQ5H9T9 825 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 LHX8Q68G74 356 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 IZUMO2Q6UXV1 221 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 FATE1Q969F0 183 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 RCN3Q96D15 328 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 MAELQ96JY0 434 aaKnown RBP13.45□□□□□ -0.26
CCDC3-202ENST00000378839 TBATAQ96M53 351 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 RPRD1AQ96P16 312 aaPredicted RBP13.45□□□□□ -0.26
CCDC3-202ENST00000378839 CRYL1Q9Y2S2 319 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 FIS1Q9Y3D6 152 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 A0A087X1B8 175 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 ENPP3O14638 875 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 MAP3K7O43318 606 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 PAMP19021 973 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 FGFR3P22607 806 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 POLD3Q15054 466 aaPredicted RBP13.45□□□□□ -0.26
CCDC3-202ENST00000378839 SLC14A2Q15849 920 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 MGAT5BQ3V5L5 792 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 GPR158Q5T848 1215 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 RNF180Q86T96 592 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 LCA5Q86VQ0 697 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 DSELQ8IZU8 1212 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 PHF21BQ96EK2 531 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 SEMA3CQ99985 751 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 PRKD2Q9BZL6 878 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 PDFQ9HBH1 243 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 FNIP2Q9P278 1114 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 ANGPTL2Q9UKU9 493 aa13.45□□□□□ -0.26
CCDC3-202ENST00000378839 A0A1W2PQ45 241 aaPredicted RBP13.44□□□□□ -0.26
CCDC3-202ENST00000378839 A0A1W2PQY0 241 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 ARHGEF37A1IGU5 675 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 LIN7AO14910 233 aaPredicted RBP13.44□□□□□ -0.26
CCDC3-202ENST00000378839 SYN3O14994 580 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 LUC7L3O95232 432 aaKnown RBP13.44□□□□□ -0.26
CCDC3-202ENST00000378839 SLC2A3P11169 496 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 SP100P23497 879 aaPredicted RBP13.44□□□□□ -0.26
CCDC3-202ENST00000378839 DNAJB1P25685 340 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 RGRP47804 291 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 CDC16Q13042 620 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 NXNQ6DKJ4 435 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 PRSS55Q6UWB4 352 aaPredicted RBP13.44□□□□□ -0.26
CCDC3-202ENST00000378839 SLC43A3Q8NBI5 491 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 TET1Q8NFU7 2136 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 PTERQ96BW5 349 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 DNAJC1Q96KC8 554 aaKnown RBP13.44□□□□□ -0.26
CCDC3-202ENST00000378839 TSNARE1Q96NA8 513 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 POLR3BQ9NW08 1133 aaPredicted RBP13.44□□□□□ -0.26
CCDC3-202ENST00000378839 NDE1Q9NXR1 346 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 MID2Q9UJV3 735 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 CORO1CQ9ULV4 474 aaPredicted RBP13.44□□□□□ -0.26
CCDC3-202ENST00000378839 LRCH1Q9Y2L9 728 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 CASP8AP2Q9UKL3 1982 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 RGSL1A5PLK6 1076 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 TCAF2A6NFQ2 919 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 PPP6CO00743 305 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 NPHS1O60500 1241 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms