RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 PRKCGP05129 697 aa21.85■■□□□ 1.09
CCDC28B-201ENST00000373602 PEX5P50542 639 aa21.85■■□□□ 1.09
CCDC28B-201ENST00000373602 ZCCHC8Q6NZY4 707 aaKnown RBP21.85■■□□□ 1.09
CCDC28B-201ENST00000373602 PHACTR4Q8IZ21 702 aa21.85■■□□□ 1.09
CCDC28B-201ENST00000373602 RBFAQ8N0V3 343 aa21.85■■□□□ 1.09
CCDC28B-201ENST00000373602 ZNF564Q8TBZ8 553 aaPredicted RBP21.85■■□□□ 1.09
CCDC28B-201ENST00000373602 LMX1AQ8TE12 382 aa21.85■■□□□ 1.09
CCDC28B-201ENST00000373602 TBATAQ96M53 351 aa21.85■■□□□ 1.09
CCDC28B-201ENST00000373602 TCEAL2Q9H3H9 227 aaPredicted RBP21.85■■□□□ 1.09
CCDC28B-201ENST00000373602 RCOR3Q9P2K3 495 aaPredicted RBP21.85■■□□□ 1.09
CCDC28B-201ENST00000373602 SPASTQ9UBP0 616 aa21.85■■□□□ 1.09
CCDC28B-201ENST00000373602 CLCA2Q9UQC9 943 aa21.85■■□□□ 1.09
CCDC28B-201ENST00000373602 LRRK1Q38SD2 2015 aa21.85■■□□□ 1.09
CCDC28B-201ENST00000373602 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP21.84■■□□□ 1.09
CCDC28B-201ENST00000373602 TPP1O14773 563 aa21.84■■□□□ 1.09
CCDC28B-201ENST00000373602 LZTS3O60299 673 aaPredicted RBP21.84■■□□□ 1.09
CCDC28B-201ENST00000373602 MAFKO60675 156 aa21.84■■□□□ 1.09
CCDC28B-201ENST00000373602 MYF5P13349 255 aa21.84■■□□□ 1.09
CCDC28B-201ENST00000373602 CR2P20023 1033 aa21.84■■□□□ 1.09
CCDC28B-201ENST00000373602 IL4RP24394 825 aa21.84■■□□□ 1.09
CCDC28B-201ENST00000373602 SERPINB6P35237 376 aa21.84■■□□□ 1.09
CCDC28B-201ENST00000373602 HSPA9P38646 679 aaKnown RBP21.84■■□□□ 1.09
CCDC28B-201ENST00000373602 DUSP3P51452 185 aaPredicted RBP21.84■■□□□ 1.09
CCDC28B-201ENST00000373602 CDH6P55285 790 aa21.84■■□□□ 1.09
CCDC28B-201ENST00000373602 POLR2LP62875 67 aaKnown RBP21.84■■□□□ 1.09
CCDC28B-201ENST00000373602 SEMG2Q02383 582 aa21.84■■□□□ 1.09
CCDC28B-201ENST00000373602 RALGDSQ12967 914 aa21.84■■□□□ 1.09
CCDC28B-201ENST00000373602 KRT81Q14533 505 aa21.84■■□□□ 1.09
CCDC28B-201ENST00000373602 ZNF235Q14590 738 aa21.84■■□□□ 1.09
CCDC28B-201ENST00000373602 HADHQ16836 314 aaKnown RBP21.84■■□□□ 1.09
CCDC28B-201ENST00000373602 SPOCK2Q92563 424 aa21.84■■□□□ 1.09
CCDC28B-201ENST00000373602 EVA1BQ9NVM1 165 aa21.84■■□□□ 1.09
CCDC28B-201ENST00000373602 APOBEC3BQ9UH17 382 aaKnown RBP21.84■■□□□ 1.09
CCDC28B-201ENST00000373602 SALL4Q9UJQ4 1053 aa21.84■■□□□ 1.09
CCDC28B-201ENST00000373602 RAXQ9Y2V3 346 aa21.84■■□□□ 1.09
CCDC28B-201ENST00000373602 ANKRD36A6QL64 1941 aa21.84■■□□□ 1.09
CCDC28B-201ENST00000373602 PKD1L2Q7Z442 2459 aa21.84■■□□□ 1.09
CCDC28B-201ENST00000373602 APC2O95996 2303 aa21.83■■□□□ 1.09
CCDC28B-201ENST00000373602 TMEM110-MUSTN1A8MSY1 372 aa21.83■■□□□ 1.09
CCDC28B-201ENST00000373602 CBFA2T2O43439 604 aa21.83■■□□□ 1.09
CCDC28B-201ENST00000373602 GP1BAP07359 652 aa21.83■■□□□ 1.09
CCDC28B-201ENST00000373602 ARSEP51690 589 aa21.83■■□□□ 1.09
CCDC28B-201ENST00000373602 SLC18A3Q16572 532 aa21.83■■□□□ 1.09
CCDC28B-201ENST00000373602 ASTE1Q2TB18 679 aaPredicted RBP21.83■■□□□ 1.09
CCDC28B-201ENST00000373602 PRRT3Q5FWE3 981 aa21.83■■□□□ 1.09
CCDC28B-201ENST00000373602 SPECC1LQ69YQ0 1117 aa21.83■■□□□ 1.09
CCDC28B-201ENST00000373602 PGBD5Q8N414 524 aa21.83■■□□□ 1.09
CCDC28B-201ENST00000373602 ATPAF2Q8N5M1 289 aa21.83■■□□□ 1.09
CCDC28B-201ENST00000373602 DCBLD1Q8N8Z6 715 aa21.83■■□□□ 1.09
CCDC28B-201ENST00000373602 OR8K1Q8NGG5 319 aa21.83■■□□□ 1.09
CCDC28B-201ENST00000373602 NXPE2Q96DL1 559 aa21.83■■□□□ 1.09
CCDC28B-201ENST00000373602 NUDCD1Q96RS6 583 aa21.83■■□□□ 1.09
CCDC28B-201ENST00000373602 DNAJC7Q99615 494 aa21.83■■□□□ 1.09
CCDC28B-201ENST00000373602 IL12RB2Q99665 862 aa21.83■■□□□ 1.09
CCDC28B-201ENST00000373602 SLC13A1Q9BZW2 595 aa21.83■■□□□ 1.09
CCDC28B-201ENST00000373602 NRSN2Q9GZP1 204 aa21.83■■□□□ 1.09
CCDC28B-201ENST00000373602 CTTNBP2NLQ9P2B4 639 aa21.83■■□□□ 1.09
CCDC28B-201ENST00000373602 UVRAGQ9P2Y5 699 aa21.83■■□□□ 1.09
CCDC28B-201ENST00000373602 GPSM3Q9Y4H4 160 aa21.83■■□□□ 1.09
CCDC28B-201ENST00000373602 WDFY3Q8IZQ1 3526 aa21.83■■□□□ 1.08
CCDC28B-201ENST00000373602 ACACAQ13085 2346 aa21.83■■□□□ 1.08
CCDC28B-201ENST00000373602 TTC24A2A3L6 582 aaPredicted RBP21.82■■□□□ 1.08
CCDC28B-201ENST00000373602 HTRA2O43464 458 aaPredicted RBP21.82■■□□□ 1.08
CCDC28B-201ENST00000373602 GCATO75600 419 aa21.82■■□□□ 1.08
CCDC28B-201ENST00000373602 PROSCO94903 275 aa21.82■■□□□ 1.08
CCDC28B-201ENST00000373602 MT-CO3P00414 261 aa21.82■■□□□ 1.08
CCDC28B-201ENST00000373602 CD48P09326 243 aa21.82■■□□□ 1.08
CCDC28B-201ENST00000373602 H2AFZP0C0S5 128 aa21.82■■□□□ 1.08
CCDC28B-201ENST00000373602 SSR1P43307 286 aaKnown RBP21.82■■□□□ 1.08
CCDC28B-201ENST00000373602 PPARDQ03181 441 aa21.82■■□□□ 1.08
CCDC28B-201ENST00000373602 MMRN1Q13201 1228 aa21.82■■□□□ 1.08
CCDC28B-201ENST00000373602 TRIM14Q14142 442 aa21.82■■□□□ 1.08
CCDC28B-201ENST00000373602 INPP5AQ14642 412 aa21.82■■□□□ 1.08
CCDC28B-201ENST00000373602 DEFB133Q30KQ1 61 aa21.82■■□□□ 1.08
CCDC28B-201ENST00000373602 FAXCQ5TGI0 409 aa21.82■■□□□ 1.08
CCDC28B-201ENST00000373602 LIPIQ6XZB0 460 aa21.82■■□□□ 1.08
CCDC28B-201ENST00000373602 H2AFVQ71UI9 128 aa21.82■■□□□ 1.08
CCDC28B-201ENST00000373602 DPPA4Q7L190 304 aa21.82■■□□□ 1.08
CCDC28B-201ENST00000373602 LRRC49Q8IUZ0 686 aa21.82■■□□□ 1.08
CCDC28B-201ENST00000373602 BBS5Q8N3I7 341 aa21.82■■□□□ 1.08
CCDC28B-201ENST00000373602 PAF1Q8N7H5 531 aa21.82■■□□□ 1.08
CCDC28B-201ENST00000373602 MGME1Q9BQP7 344 aa21.82■■□□□ 1.08
CCDC28B-201ENST00000373602 APOOQ9BUR5 198 aa21.82■■□□□ 1.08
CCDC28B-201ENST00000373602 LRRC61Q9BV99 259 aa21.82■■□□□ 1.08
CCDC28B-201ENST00000373602 PACSIN1Q9BY11 444 aa21.82■■□□□ 1.08
CCDC28B-201ENST00000373602 NCKIPSDQ9NZQ3 722 aa21.82■■□□□ 1.08
CCDC28B-201ENST00000373602 ZFHX4Q86UP3 3567 aa21.82■■□□□ 1.08
CCDC28B-201ENST00000373602 MYLKQ15746 1914 aa21.82■■□□□ 1.08
CCDC28B-201ENST00000373602 SSU72P8A0A1W2PR75 194 aa21.81■■□□□ 1.08
CCDC28B-201ENST00000373602 LMO7DNF2Z398 122 aa21.81■■□□□ 1.08
CCDC28B-201ENST00000373602 OPA1O60313 960 aa21.81■■□□□ 1.08
CCDC28B-201ENST00000373602 SOCS5O75159 536 aa21.81■■□□□ 1.08
CCDC28B-201ENST00000373602 BLKP51451 505 aa21.81■■□□□ 1.08
CCDC28B-201ENST00000373602 ADKP55263 362 aaKnown RBP21.81■■□□□ 1.08
CCDC28B-201ENST00000373602 MTM1Q13496 603 aa21.81■■□□□ 1.08
CCDC28B-201ENST00000373602 C1orf61Q13536 156 aa21.81■■□□□ 1.08
CCDC28B-201ENST00000373602 DPYSL3Q14195 570 aa21.81■■□□□ 1.08
CCDC28B-201ENST00000373602 NFATC4Q14934 902 aa21.81■■□□□ 1.08
CCDC28B-201ENST00000373602 RTP5Q14D33 572 aa21.81■■□□□ 1.08
CCDC28B-201ENST00000373602 ATP13A4Q4VNC1 1196 aa21.81■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms