RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 MGAT5BQ3V5L5 792 aa20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 TCHHL1Q5QJ38 904 aaPredicted RBP20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 NXNQ6DKJ4 435 aa20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 NADSYN1Q6IA69 706 aa20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 IRGCQ6NXR0 463 aa20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 RNF19BQ6ZMZ0 732 aa20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 RNF111Q6ZNA4 994 aa20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 LDB1Q86U70 411 aaPredicted RBP20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 OR6P1Q8NGX9 317 aa20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 SLC26A7Q8TE54 656 aa20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 CATSPER2Q96P56 530 aa20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 SEPT5Q99719 369 aaPredicted RBP20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 VWA7Q9Y334 891 aa20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 SNUPNO95149 360 aaKnown RBP20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 S1PR4O95977 384 aa20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 COL6A1P12109 1028 aa20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 HNRNPLP14866 589 aaKnown RBP eCLIP20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 OR1E1P30953 314 aa20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 MRPS35P82673 323 aaKnown RBP20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 SP3Q02447 781 aa20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 RING1Q06587 406 aa20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 GPR17Q13304 367 aa20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 SH2D4BQ5SQS7 431 aa20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 SLC43A3Q8NBI5 491 aa20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 ANKRD49Q8WVL7 239 aa20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 JADE3Q92613 823 aa20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 TSPAN17Q96FV3 270 aa20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 SPATA17Q96L03 361 aa20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 MARCH5Q9NX47 278 aa20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 MARCH4Q9P2E8 410 aaPredicted RBP20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 BUD23O43709 281 aaKnown RBP20.94■□□□□ 0.94
CCDC88B-203ENST00000359902 PBX3P40426 434 aa20.94■□□□□ 0.94
CCDC88B-203ENST00000359902 GATMP50440 423 aa20.94■□□□□ 0.94
CCDC88B-203ENST00000359902 NUDT2P50583 147 aa20.94■□□□□ 0.94
CCDC88B-203ENST00000359902 YBEYP58557 167 aaPredicted RBP20.94■□□□□ 0.94
CCDC88B-203ENST00000359902 CYLC2Q14093 348 aaPredicted RBP20.94■□□□□ 0.94
CCDC88B-203ENST00000359902 ABI1Q8IZP0 508 aa20.94■□□□□ 0.94
CCDC88B-203ENST00000359902 UCMAQ8WVF2 138 aa20.94■□□□□ 0.94
CCDC88B-203ENST00000359902 MAELQ96JY0 434 aaKnown RBP20.94■□□□□ 0.94
CCDC88B-203ENST00000359902 SEMA3CQ99985 751 aa20.94■□□□□ 0.94
CCDC88B-203ENST00000359902 CCSER2Q9H7U1 834 aa20.94■□□□□ 0.94
CCDC88B-203ENST00000359902 OR51F1A6NGY5 319 aa20.94■□□□□ 0.94
CCDC88B-203ENST00000359902 ENPP3O14638 875 aa20.94■□□□□ 0.94
CCDC88B-203ENST00000359902 MUSKO15146 869 aa20.94■□□□□ 0.94
CCDC88B-203ENST00000359902 ALDH2P05091 517 aa20.94■□□□□ 0.94
CCDC88B-203ENST00000359902 KYQ8NBH2 561 aa20.94■□□□□ 0.94
CCDC88B-203ENST00000359902 SPPL2BQ8TCT7 592 aa20.94■□□□□ 0.94
CCDC88B-203ENST00000359902 CCDC126Q96EE4 140 aa20.94■□□□□ 0.94
CCDC88B-203ENST00000359902 CASD1Q96PB1 797 aa20.94■□□□□ 0.94
CCDC88B-203ENST00000359902 CYP4F12Q9HCS2 524 aa20.94■□□□□ 0.94
CCDC88B-203ENST00000359902 A8MT66 165 aa20.93■□□□□ 0.94
CCDC88B-203ENST00000359902 PRAMEF11O60813 436 aa20.93■□□□□ 0.94
CCDC88B-203ENST00000359902 IPO13O94829 963 aaKnown RBP20.93■□□□□ 0.94
CCDC88B-203ENST00000359902 WISP3O95389 354 aaPredicted RBP20.93■□□□□ 0.94
CCDC88B-203ENST00000359902 RBP1P09455 135 aa20.93■□□□□ 0.94
CCDC88B-203ENST00000359902 MAPKAPK2P49137 400 aa20.93■□□□□ 0.94
CCDC88B-203ENST00000359902 CDKN2DP55273 166 aa20.93■□□□□ 0.94
CCDC88B-203ENST00000359902 PRAMEP78395 509 aa20.93■□□□□ 0.94
CCDC88B-203ENST00000359902 ACAP2Q15057 778 aa20.93■□□□□ 0.94
CCDC88B-203ENST00000359902 ACBD5Q5T8D3 534 aaPredicted RBP20.93■□□□□ 0.94
CCDC88B-203ENST00000359902 KLC3Q6P597 504 aa20.93■□□□□ 0.94
CCDC88B-203ENST00000359902 TMEM207Q6UWW9 146 aa20.93■□□□□ 0.94
CCDC88B-203ENST00000359902 DSELQ8IZU8 1212 aa20.93■□□□□ 0.94
CCDC88B-203ENST00000359902 MARK4Q96L34 752 aa20.93■□□□□ 0.94
CCDC88B-203ENST00000359902 ZBTB26Q9HCK0 441 aa20.93■□□□□ 0.94
CCDC88B-203ENST00000359902 HCSTQ9UBK5 93 aa20.93■□□□□ 0.94
CCDC88B-203ENST00000359902 A0A1W2PQ45 241 aaPredicted RBP20.93■□□□□ 0.94
CCDC88B-203ENST00000359902 A0A1W2PQY0 241 aa20.93■□□□□ 0.94
CCDC88B-203ENST00000359902 TRPC5OSA6NMA1 111 aa20.93■□□□□ 0.94
CCDC88B-203ENST00000359902 SDHDO14521 159 aa20.93■□□□□ 0.94
CCDC88B-203ENST00000359902 TBC1D4O60343 1298 aa20.93■□□□□ 0.94
CCDC88B-203ENST00000359902 ZDHHC11BP0C7U3 371 aa20.93■□□□□ 0.94
CCDC88B-203ENST00000359902 SLC11A1P49279 550 aa20.93■□□□□ 0.94
CCDC88B-203ENST00000359902 SULT2A1Q06520 285 aa20.93■□□□□ 0.94
CCDC88B-203ENST00000359902 DUSP4Q13115 394 aa20.93■□□□□ 0.94
CCDC88B-203ENST00000359902 IZUMO2Q6UXV1 221 aa20.93■□□□□ 0.94
CCDC88B-203ENST00000359902 DHDDSQ86SQ9 333 aa20.93■□□□□ 0.94
CCDC88B-203ENST00000359902 SETD3Q86TU7 594 aaPredicted RBP20.93■□□□□ 0.94
CCDC88B-203ENST00000359902 POLR1EQ9GZS1 481 aaKnown RBP20.93■□□□□ 0.94
CCDC88B-203ENST00000359902 ELAC1Q9H777 363 aaKnown RBP20.93■□□□□ 0.94
CCDC88B-203ENST00000359902 SUDS3Q9H7L9 328 aaPredicted RBP20.93■□□□□ 0.94
CCDC88B-203ENST00000359902 GTSE1Q9NYZ3 720 aa20.93■□□□□ 0.94
CCDC88B-203ENST00000359902 SRRDQ9UH36 339 aa20.93■□□□□ 0.94
CCDC88B-203ENST00000359902 PCDHB7Q9Y5E2 793 aa20.93■□□□□ 0.94
CCDC88B-203ENST00000359902 GREB1Q4ZG55 1949 aa20.92■□□□□ 0.94
CCDC88B-203ENST00000359902 TACR2P21452 398 aa20.92■□□□□ 0.94
CCDC88B-203ENST00000359902 KCNQ1P51787 676 aa20.92■□□□□ 0.94
CCDC88B-203ENST00000359902 HERC3Q15034 1050 aa20.92■□□□□ 0.94
CCDC88B-203ENST00000359902 C16orf89Q6UX73 402 aa20.92■□□□□ 0.94
CCDC88B-203ENST00000359902 LRRC8DQ7L1W4 858 aa20.92■□□□□ 0.94
CCDC88B-203ENST00000359902 HIPK4Q8NE63 616 aa20.92■□□□□ 0.94
CCDC88B-203ENST00000359902 SH3RF2Q8TEC5 729 aa20.92■□□□□ 0.94
CCDC88B-203ENST00000359902 GIPC2Q8TF65 315 aa20.92■□□□□ 0.94
CCDC88B-203ENST00000359902 TBATAQ96M53 351 aa20.92■□□□□ 0.94
CCDC88B-203ENST00000359902 ECSITQ9BQ95 431 aa20.92■□□□□ 0.94
CCDC88B-203ENST00000359902 TSEN34Q9BSV6 310 aaKnown RBP20.92■□□□□ 0.94
CCDC88B-203ENST00000359902 COMMD8Q9NX08 183 aa20.92■□□□□ 0.94
CCDC88B-203ENST00000359902 PRPF19Q9UMS4 504 aaKnown RBP20.92■□□□□ 0.94
CCDC88B-203ENST00000359902 COPG1Q9Y678 874 aaKnown RBP20.92■□□□□ 0.94
CCDC88B-203ENST00000359902 TLR5O60602 858 aa20.92■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms