RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 ZDHHC18Q9NUE0 388 aa19.63■□□□□ 0.73
CCDC88B-202ENST00000356786 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP19.63■□□□□ 0.73
CCDC88B-202ENST00000356786 CLDN25C9JDP6 229 aa19.63■□□□□ 0.73
CCDC88B-202ENST00000356786 PSMD11O00231 422 aa19.63■□□□□ 0.73
CCDC88B-202ENST00000356786 ZNF12P17014 697 aa19.63■□□□□ 0.73
CCDC88B-202ENST00000356786 ABATP80404 500 aa19.63■□□□□ 0.73
CCDC88B-202ENST00000356786 PTSQ03393 145 aa19.63■□□□□ 0.73
CCDC88B-202ENST00000356786 CTXN3Q4LDR2 81 aa19.63■□□□□ 0.73
CCDC88B-202ENST00000356786 ELMO1Q92556 727 aa19.63■□□□□ 0.73
CCDC88B-202ENST00000356786 TRMOQ9BU70 441 aa19.63■□□□□ 0.73
CCDC88B-202ENST00000356786 POLR1EQ9GZS1 481 aaKnown RBP19.63■□□□□ 0.73
CCDC88B-202ENST00000356786 AHSPQ9NZD4 102 aa19.63■□□□□ 0.73
CCDC88B-202ENST00000356786 NFICP08651 508 aa19.63■□□□□ 0.73
CCDC88B-202ENST00000356786 TGFB2P61812 414 aa19.63■□□□□ 0.73
CCDC88B-202ENST00000356786 GPRIN3Q6ZVF9 776 aa19.63■□□□□ 0.73
CCDC88B-202ENST00000356786 HSFY1Q96LI6 401 aa19.63■□□□□ 0.73
CCDC88B-202ENST00000356786 QKIQ96PU8 341 aaKnown RBP eCLIP19.63■□□□□ 0.73
CCDC88B-202ENST00000356786 CIDEBQ9UHD4 219 aa19.63■□□□□ 0.73
CCDC88B-202ENST00000356786 MAGEL2Q9UJ55 1249 aa19.63■□□□□ 0.73
CCDC88B-202ENST00000356786 LGALS3BPQ08380 585 aa19.63■□□□□ 0.73
CCDC88B-202ENST00000356786 CRY1Q16526 586 aa19.63■□□□□ 0.73
CCDC88B-202ENST00000356786 MZT2AQ6P582 158 aa19.63■□□□□ 0.73
CCDC88B-202ENST00000356786 ZFPM1Q8IX07 1006 aa19.63■□□□□ 0.73
CCDC88B-202ENST00000356786 FAM156AQ8NDB6 213 aa19.63■□□□□ 0.73
CCDC88B-202ENST00000356786 LRTOMTQ8WZ04 291 aa19.63■□□□□ 0.73
CCDC88B-202ENST00000356786 GPATCH1Q9BRR8 931 aaKnown RBP19.63■□□□□ 0.73
CCDC88B-202ENST00000356786 SLC22A3O75751 556 aa19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 CD86P42081 329 aa19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 GSTM5P46439 218 aa19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 PSEN1P49768 467 aa19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 DLG2Q15700 870 aa19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 OR2T12Q8NG77 320 aa19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 C8orf4Q9NR00 106 aa19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 ING4Q9UNL4 249 aa19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 NPM3O75607 178 aaKnown RBP19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 CKMP06732 381 aa19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 MBL2P11226 248 aaPredicted RBP19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 TNFSF9P41273 254 aa19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 JAM2P57087 298 aa19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 PTPN20Q4JDL3 420 aa19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 NUDT18Q6ZVK8 323 aa19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 PIGZQ86VD9 579 aa19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 CNTD1Q8N815 330 aa19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 LEMD2Q8NC56 503 aa19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 TMEM159Q96B96 161 aa19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 EMILIN2Q9BXX0 1053 aa19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 RNF19AQ9NV58 838 aa19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 CMTM6Q9NX76 183 aa19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 ZNF222Q9UK12 451 aa19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 BBIP1A8MTZ0 92 aa19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 CDKN2BP42772 138 aa19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 PLET1Q6UQ28 207 aa19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 PROSER1Q86XN7 944 aa19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 MBD2Q9UBB5 411 aa19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 PLIN3O60664 434 aa19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 RPS9P46781 194 aaKnown RBP19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 IRF8Q02556 426 aa19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 BANPQ8N9N5 519 aa19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 STARD8Q92502 1023 aa19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 ERLEC1Q96DZ1 483 aa19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 TPK1Q9H3S4 243 aa19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 SPON1Q9HCB6 807 aa19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 ZNF221Q9UK13 617 aa19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 OGDHLQ9ULD0 1010 aa19.62■□□□□ 0.73
CCDC88B-202ENST00000356786 FADS2O95864 444 aaKnown RBP19.61■□□□□ 0.73
CCDC88B-202ENST00000356786 ZNF286BP0CG31 522 aa19.61■□□□□ 0.73
CCDC88B-202ENST00000356786 THPOP40225 353 aa19.61■□□□□ 0.73
CCDC88B-202ENST00000356786 CPT1AP50416 773 aa19.61■□□□□ 0.73
CCDC88B-202ENST00000356786 BNC1Q01954 994 aa19.61■□□□□ 0.73
CCDC88B-202ENST00000356786 SIM2Q14190 667 aaPredicted RBP19.61■□□□□ 0.73
CCDC88B-202ENST00000356786 PTPRNQ16849 979 aa19.61■□□□□ 0.73
CCDC88B-202ENST00000356786 UNC93AQ86WB7 457 aa19.61■□□□□ 0.73
CCDC88B-202ENST00000356786 MFSD14AQ96MC6 490 aa19.61■□□□□ 0.73
CCDC88B-202ENST00000356786 ING3Q9NXR8 418 aa19.61■□□□□ 0.73
CCDC88B-202ENST00000356786 PLOD3O60568 738 aa19.61■□□□□ 0.73
CCDC88B-202ENST00000356786 DARSP14868 501 aaKnown RBP19.61■□□□□ 0.73
CCDC88B-202ENST00000356786 TYMPP19971 482 aa19.61■□□□□ 0.73
CCDC88B-202ENST00000356786 GLYATQ6IB77 296 aa19.61■□□□□ 0.73
CCDC88B-202ENST00000356786 SDE2Q6IQ49 451 aa19.61■□□□□ 0.73
CCDC88B-202ENST00000356786 C12orf56Q8IXR9 622 aa19.61■□□□□ 0.73
CCDC88B-202ENST00000356786 TRPM5Q9NZQ8 1165 aa19.61■□□□□ 0.73
CCDC88B-202ENST00000356786 VWA7Q9Y334 891 aa19.61■□□□□ 0.73
CCDC88B-202ENST00000356786 GPR182O15218 404 aa19.61■□□□□ 0.73
CCDC88B-202ENST00000356786 AKR1D1P51857 326 aa19.61■□□□□ 0.73
CCDC88B-202ENST00000356786 ADAM17P78536 824 aa19.61■□□□□ 0.73
CCDC88B-202ENST00000356786 FCHO2Q0JRZ9 810 aa19.61■□□□□ 0.73
CCDC88B-202ENST00000356786 TAF1CQ15572 869 aaPredicted RBP19.61■□□□□ 0.73
CCDC88B-202ENST00000356786 CERCAMQ5T4B2 595 aa19.61■□□□□ 0.73
CCDC88B-202ENST00000356786 RETSATQ6NUM9 610 aa19.61■□□□□ 0.73
CCDC88B-202ENST00000356786 PPM1MQ96MI6 270 aa19.61■□□□□ 0.73
CCDC88B-202ENST00000356786 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP19.61■□□□□ 0.738e-8■■■□□ 16.5
CCDC88B-202ENST00000356786 GTF3C5Q9Y5Q8 519 aaPredicted RBP19.61■□□□□ 0.73
CCDC88B-202ENST00000356786 HOXA10P31260 410 aaPredicted RBP19.61■□□□□ 0.73
CCDC88B-202ENST00000356786 HPCAL1P37235 193 aa19.61■□□□□ 0.73
CCDC88B-202ENST00000356786 FAM117BQ6P1L5 589 aa19.61■□□□□ 0.73
CCDC88B-202ENST00000356786 KRT74Q7RTS7 529 aa19.61■□□□□ 0.73
CCDC88B-202ENST00000356786 SERAC1Q96JX3 654 aa19.61■□□□□ 0.73
CCDC88B-202ENST00000356786 UNC93B1Q9H1C4 597 aa19.61■□□□□ 0.73
CCDC88B-202ENST00000356786 RASSF1Q9NS23 344 aa19.61■□□□□ 0.73
CCDC88B-202ENST00000356786 MRC1P22897 1456 aa19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms