RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 TWF1Q12792 350 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 PLD1Q13393 1074 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 PDK4Q16654 411 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 WDR45BQ5MNZ6 344 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 PDE12Q6L8Q7 609 aaKnown RBP10.2□□□□□ -0.78
SYNE1-203ENST00000354674 HPS6Q86YV9 775 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 PYROXD2Q8N2H3 581 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 TTC13Q8NBP0 860 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 SLC35B2Q8TB61 432 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 RNF139Q8WU17 664 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 ART4Q93070 314 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 NKD2Q969F2 451 aaPredicted RBP10.2□□□□□ -0.78
SYNE1-203ENST00000354674 CSPG4P5Q96PW8 444 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 SLC39A3Q9BRY0 314 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 CALN1Q9BXU9 219 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 DHX35Q9H5Z1 703 aaKnown RBP10.2□□□□□ -0.78
SYNE1-203ENST00000354674 SAYSD1Q9NPB0 183 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 TMPRSS4Q9NRS4 437 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 SFMBT1Q9UHJ3 866 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 CDC14AQ9UNH5 594 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 DRG1Q9Y295 367 aaKnown RBP10.2□□□□□ -0.78
SYNE1-203ENST00000354674 ZNF840PA6NDX5 716 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 H3BNC9 293 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 TIMM44O43615 452 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 UGT1A9O60656 530 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 TMCC2O75069 709 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 UGT1A6P19224 532 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 MX2P20592 715 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 CD247P20963 164 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 UGT1A1P22309 533 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 UGT1A4P22310 534 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 UGT1A3P35503 534 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 UGT1A5P35504 534 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 CLCN4P51793 760 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 PRAMEP78395 509 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 TFDP2Q14188 446 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 ARL13BQ3SXY8 428 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 EFHC2Q5JST6 749 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 TMTC4Q5T4D3 741 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 USP43Q70EL4 1123 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 ALDH16A1Q8IZ83 802 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 SLC38A6Q8IZM9 456 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 PLD5Q8N7P1 536 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 PLEKHA8Q96JA3 519 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 FCRL2Q96LA5 508 aaPredicted RBP10.2□□□□□ -0.78
SYNE1-203ENST00000354674 CDK5RAP1Q96SZ6 601 aaKnown RBP10.2□□□□□ -0.78
SYNE1-203ENST00000354674 MECRQ9BV79 373 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 TSSK1BQ9BXA7 367 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 OSBPL6Q9BZF3 934 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 UGT1A7Q9HAW7 530 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 UGT1A10Q9HAW8 530 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 UGT1A8Q9HAW9 530 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 ENTPD7Q9NQZ7 604 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 AP4B1Q9Y6B7 739 aa10.2□□□□□ -0.78
SYNE1-203ENST00000354674 SYNJ2BP-COX16A0A087WUM0 186 aa10.19□□□□□ -0.78
SYNE1-203ENST00000354674 C1orf232A0A0U1RR37 186 aa10.19□□□□□ -0.78
SYNE1-203ENST00000354674 PRRG1O14668 218 aa10.19□□□□□ -0.78
SYNE1-203ENST00000354674 GRM6O15303 877 aa10.19□□□□□ -0.78
SYNE1-203ENST00000354674 ITM2AO43736 263 aa10.19□□□□□ -0.78
SYNE1-203ENST00000354674 CNOT3O75175 753 aaKnown RBP10.19□□□□□ -0.78
SYNE1-203ENST00000354674 TGM2P21980 687 aa10.19□□□□□ -0.78
SYNE1-203ENST00000354674 FDFT1P37268 417 aa10.19□□□□□ -0.78
SYNE1-203ENST00000354674 GSSP48637 474 aa10.19□□□□□ -0.78
SYNE1-203ENST00000354674 NRG1Q02297 640 aaPredicted RBP10.19□□□□□ -0.78
SYNE1-203ENST00000354674 PDAP1Q13442 181 aaKnown RBP10.19□□□□□ -0.78
SYNE1-203ENST00000354674 DPYSQ14117 519 aa10.19□□□□□ -0.78
SYNE1-203ENST00000354674 TMEM150AQ86TG1 271 aa10.19□□□□□ -0.78
SYNE1-203ENST00000354674 RFX6Q8HWS3 928 aa10.19□□□□□ -0.78
SYNE1-203ENST00000354674 KIAA2013Q8IYS2 634 aa10.19□□□□□ -0.78
SYNE1-203ENST00000354674 TCP10LQ8TDR4 215 aa10.19□□□□□ -0.78
SYNE1-203ENST00000354674 TKTL2Q9H0I9 626 aa10.19□□□□□ -0.78
SYNE1-203ENST00000354674 RBM38Q9H0Z9 239 aaKnown RBP10.19□□□□□ -0.78
SYNE1-203ENST00000354674 SAR1AQ9NR31 198 aa10.19□□□□□ -0.78
SYNE1-203ENST00000354674 COX16Q9P0S2 106 aa10.19□□□□□ -0.78
SYNE1-203ENST00000354674 ARIH1Q9Y4X5 557 aaPredicted RBP10.19□□□□□ -0.78
SYNE1-203ENST00000354674 CHD7Q9P2D1 2997 aa10.19□□□□□ -0.78
SYNE1-203ENST00000354674 MTCL1Q9Y4B5 1905 aaKnown RBP10.19□□□□□ -0.78
SYNE1-203ENST00000354674 CRTAMO95727 393 aa10.19□□□□□ -0.78
SYNE1-203ENST00000354674 CCR1P32246 355 aa10.19□□□□□ -0.78
SYNE1-203ENST00000354674 EPHB3P54753 998 aa10.19□□□□□ -0.78
SYNE1-203ENST00000354674 FOXD4Q12950 439 aaPredicted RBP10.19□□□□□ -0.78
SYNE1-203ENST00000354674 E2F2Q14209 437 aa10.19□□□□□ -0.78
SYNE1-203ENST00000354674 VEPH1Q14D04 833 aa10.19□□□□□ -0.78
SYNE1-203ENST00000354674 TRIP4Q15650 581 aaPredicted RBP10.19□□□□□ -0.78
SYNE1-203ENST00000354674 CCDC149Q6ZUS6 474 aa10.19□□□□□ -0.78
SYNE1-203ENST00000354674 DNAJB7Q7Z6W7 309 aaPredicted RBP10.19□□□□□ -0.78
SYNE1-203ENST00000354674 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.19□□□□□ -0.78
SYNE1-203ENST00000354674 PSD4Q8NDX1 1056 aa10.19□□□□□ -0.78
SYNE1-203ENST00000354674 OXNAD1Q96HP4 312 aaPredicted RBP10.19□□□□□ -0.78
SYNE1-203ENST00000354674 LRRC3Q9BY71 257 aa10.19□□□□□ -0.78
SYNE1-203ENST00000354674 ARHGEF4Q9NR80 690 aa10.19□□□□□ -0.78
SYNE1-203ENST00000354674 NEU3Q9UQ49 428 aa10.19□□□□□ -0.78
SYNE1-203ENST00000354674 OBSL1O75147 1896 aa10.19□□□□□ -0.78
SYNE1-203ENST00000354674 ZSCAN5BA6NJL1 495 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 FAM47E-STBD1D6RA91 191 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 FAM72CH0Y354 149 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 GOLGA8TH3BQL2 631 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 MSI1O43347 362 aaKnown RBP10.18□□□□□ -0.78
SYNE1-203ENST00000354674 PROCP04070 461 aa10.18□□□□□ -0.78
SYNE1-203ENST00000354674 ITGAVP06756 1048 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms