RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 BLOC1S6Q9UL45 172 aa22.51■■□□□ 1.19
TRIM28-202ENST00000341753 PLXNA1Q9UIW2 1896 aa22.51■■□□□ 1.19
TRIM28-202ENST00000341753 YAP1P46937 504 aaKnown RBP22.51■■□□□ 1.19
TRIM28-202ENST00000341753 FGD3Q5JSP0 725 aa22.51■■□□□ 1.19
TRIM28-202ENST00000341753 SAMD4BQ5PRF9 694 aaKnown RBP22.51■■□□□ 1.19
TRIM28-202ENST00000341753 OGFOD2Q6N063 350 aa22.51■■□□□ 1.19
TRIM28-202ENST00000341753 LYSMD3Q7Z3D4 306 aa22.51■■□□□ 1.19
TRIM28-202ENST00000341753 RETREG3Q86VR2 466 aa22.51■■□□□ 1.19
TRIM28-202ENST00000341753 ANKFN1Q8N957 763 aa22.51■■□□□ 1.19
TRIM28-202ENST00000341753 TOP1MTQ969P6 601 aa22.51■■□□□ 1.19
TRIM28-202ENST00000341753 ADI1Q9BV57 179 aa22.51■■□□□ 1.19
TRIM28-202ENST00000341753 UPF3AQ9H1J1 476 aaKnown RBP22.51■■□□□ 1.19
TRIM28-202ENST00000341753 MRPL40Q9NQ50 206 aaKnown RBP22.51■■□□□ 1.19
TRIM28-202ENST00000341753 RNF103-CHMP3A0A140T963 221 aa22.51■■□□□ 1.19
TRIM28-202ENST00000341753 DYNC1LI2O43237 492 aaPredicted RBP22.51■■□□□ 1.19
TRIM28-202ENST00000341753 ARNTP27540 789 aa22.51■■□□□ 1.19
TRIM28-202ENST00000341753 SCNN1AP37088 669 aa22.51■■□□□ 1.19
TRIM28-202ENST00000341753 ZNF470Q6ECI4 717 aa22.51■■□□□ 1.19
TRIM28-202ENST00000341753 ARHGAP36Q6ZRI8 547 aa22.51■■□□□ 1.19
TRIM28-202ENST00000341753 ERMP1Q7Z2K6 904 aa22.51■■□□□ 1.19
TRIM28-202ENST00000341753 GPR142Q7Z601 462 aa22.51■■□□□ 1.19
TRIM28-202ENST00000341753 NPLOC4Q8TAT6 608 aa22.51■■□□□ 1.19
TRIM28-202ENST00000341753 LRRC4Q9HBW1 653 aa22.51■■□□□ 1.19
TRIM28-202ENST00000341753 STAP1Q9ULZ2 295 aa22.51■■□□□ 1.19
TRIM28-202ENST00000341753 FAM155AB1AL88 458 aaPredicted RBP22.5■■□□□ 1.19
TRIM28-202ENST00000341753 ATP5F1P24539 256 aaPredicted RBP22.5■■□□□ 1.19
TRIM28-202ENST00000341753 RPL34P49207 117 aaKnown RBP22.5■■□□□ 1.19
TRIM28-202ENST00000341753 CCNA1P78396 465 aa22.5■■□□□ 1.19
TRIM28-202ENST00000341753 CAPRIN1Q14444 709 aaKnown RBP22.5■■□□□ 1.19
TRIM28-202ENST00000341753 MAPRE2Q15555 327 aa22.5■■□□□ 1.19
TRIM28-202ENST00000341753 ZNF789Q5FWF6 425 aa22.5■■□□□ 1.19
TRIM28-202ENST00000341753 USP50Q70EL3 339 aaPredicted RBP22.5■■□□□ 1.19
TRIM28-202ENST00000341753 ZBTB8BQ8NAP8 495 aaPredicted RBP22.5■■□□□ 1.19
TRIM28-202ENST00000341753 BEST2Q8NFU1 509 aa22.5■■□□□ 1.19
TRIM28-202ENST00000341753 MS4A4AQ96JQ5 239 aa22.5■■□□□ 1.19
TRIM28-202ENST00000341753 KIFC1Q9BW19 673 aa22.5■■□□□ 1.19
TRIM28-202ENST00000341753 NPLQ9BXD5 320 aaPredicted RBP22.5■■□□□ 1.19
TRIM28-202ENST00000341753 RNF39Q9H2S5 420 aa22.5■■□□□ 1.19
TRIM28-202ENST00000341753 VPS45Q9NRW7 570 aa22.5■■□□□ 1.19
TRIM28-202ENST00000341753 SARDHQ9UL12 918 aa22.5■■□□□ 1.19
TRIM28-202ENST00000341753 PTGDR2Q9Y5Y4 395 aa22.5■■□□□ 1.19
TRIM28-202ENST00000341753 H3BMQ9 156 aa22.5■■□□□ 1.19
TRIM28-202ENST00000341753 IGFBP6P24592 240 aaPredicted RBP22.5■■□□□ 1.19
TRIM28-202ENST00000341753 FBXO47Q5MNV8 452 aa22.5■■□□□ 1.19
TRIM28-202ENST00000341753 PDZD4Q76G19 769 aaPredicted RBP22.5■■□□□ 1.19
TRIM28-202ENST00000341753 SIX6OS1Q8N1H7 587 aa22.5■■□□□ 1.19
TRIM28-202ENST00000341753 CRYBG2Q8N1P7 616 aa22.5■■□□□ 1.19
TRIM28-202ENST00000341753 SNX27Q96L92 541 aa22.5■■□□□ 1.19
TRIM28-202ENST00000341753 COG8Q96MW5 612 aa22.5■■□□□ 1.19
TRIM28-202ENST00000341753 MRPL57Q9BQC6 102 aaKnown RBP22.5■■□□□ 1.19
TRIM28-202ENST00000341753 RPF2Q9H7B2 306 aaKnown RBP22.5■■□□□ 1.19
TRIM28-202ENST00000341753 CACNG4Q9UBN1 327 aa22.5■■□□□ 1.19
TRIM28-202ENST00000341753 ZNHIT2Q9UHR6 403 aa22.5■■□□□ 1.19
TRIM28-202ENST00000341753 MTF2Q9Y483 593 aaPredicted RBP22.5■■□□□ 1.19
TRIM28-202ENST00000341753 A8MT66 165 aa22.49■■□□□ 1.19
TRIM28-202ENST00000341753 NR5A2O00482 541 aa22.49■■□□□ 1.19
TRIM28-202ENST00000341753 XPOTO43592 962 aaKnown RBP22.49■■□□□ 1.19
TRIM28-202ENST00000341753 SLC12A2P55011 1212 aa22.49■■□□□ 1.19
TRIM28-202ENST00000341753 SFSWAPQ12872 951 aaKnown RBP22.49■■□□□ 1.19
TRIM28-202ENST00000341753 AARS2Q5JTZ9 985 aaKnown RBP22.49■■□□□ 1.19
TRIM28-202ENST00000341753 NAPEPLDQ6IQ20 393 aa22.49■■□□□ 1.19
TRIM28-202ENST00000341753 LRRC43Q8N309 656 aa22.49■■□□□ 1.19
TRIM28-202ENST00000341753 TMEM40Q8WWA1 233 aa22.49■■□□□ 1.19
TRIM28-202ENST00000341753 TEKT5Q96M29 485 aa22.49■■□□□ 1.19
TRIM28-202ENST00000341753 ADAMTS10Q9H324 1103 aa22.49■■□□□ 1.19
TRIM28-202ENST00000341753 MEAF6Q9HAF1 191 aa22.49■■□□□ 1.19
TRIM28-202ENST00000341753 ERI2A8K979 691 aaKnown RBP22.49■■□□□ 1.19
TRIM28-202ENST00000341753 RECQL4O94761 1208 aa22.49■■□□□ 1.19
TRIM28-202ENST00000341753 FYNP06241 537 aa22.49■■□□□ 1.19
TRIM28-202ENST00000341753 BMP2P12643 396 aa22.49■■□□□ 1.19
TRIM28-202ENST00000341753 CHRM3P20309 590 aa22.49■■□□□ 1.19
TRIM28-202ENST00000341753 OXTRP30559 389 aa22.49■■□□□ 1.19
TRIM28-202ENST00000341753 MAP3K7CLP57077 242 aa22.49■■□□□ 1.19
TRIM28-202ENST00000341753 BNIP3Q12983 259 aa22.49■■□□□ 1.19
TRIM28-202ENST00000341753 SEPT6Q14141 434 aa22.49■■□□□ 1.19
TRIM28-202ENST00000341753 NEDD8Q15843 81 aa22.49■■□□□ 1.19
TRIM28-202ENST00000341753 KYAT1Q16773 422 aa22.49■■□□□ 1.19
TRIM28-202ENST00000341753 PKN3Q6P5Z2 889 aa22.49■■□□□ 1.19
TRIM28-202ENST00000341753 FAM35AQ86V20 835 aa22.49■■□□□ 1.19
TRIM28-202ENST00000341753 NT5C3BQ969T7 300 aa22.49■■□□□ 1.19
TRIM28-202ENST00000341753 C3orf30Q96M34 536 aa22.49■■□□□ 1.19
TRIM28-202ENST00000341753 SLC25A23Q9BV35 468 aa22.49■■□□□ 1.19
TRIM28-202ENST00000341753 HIPK3Q9H422 1215 aa22.49■■□□□ 1.19
TRIM28-202ENST00000341753 FAM124BQ9H5Z6 455 aaPredicted RBP22.49■■□□□ 1.19
TRIM28-202ENST00000341753 POLR1BQ9H9Y6 1135 aa22.49■■□□□ 1.19
TRIM28-202ENST00000341753 PFDN4Q9NQP4 134 aa22.49■■□□□ 1.19
TRIM28-202ENST00000341753 SLC38A7Q9NVC3 462 aa22.49■■□□□ 1.19
TRIM28-202ENST00000341753 NME4O00746 187 aa22.48■■□□□ 1.19
TRIM28-202ENST00000341753 COL6A2P12110 1019 aa22.48■■□□□ 1.19
TRIM28-202ENST00000341753 CHRNA4P43681 627 aa22.48■■□□□ 1.19
TRIM28-202ENST00000341753 TKTL1P51854 596 aa22.48■■□□□ 1.19
TRIM28-202ENST00000341753 MERTKQ12866 999 aa22.48■■□□□ 1.19
TRIM28-202ENST00000341753 OSTM1Q86WC4 334 aa22.48■■□□□ 1.19
TRIM28-202ENST00000341753 FUNDC1Q8IVP5 155 aa22.48■■□□□ 1.19
TRIM28-202ENST00000341753 PPP1R14BQ96C90 147 aa22.48■■□□□ 1.19
TRIM28-202ENST00000341753 IGSF5Q9NSI5 407 aa22.48■■□□□ 1.19
TRIM28-202ENST00000341753 OAZ3Q9UMX2 235 aa22.48■■□□□ 1.19
TRIM28-202ENST00000341753 YJEFN3A6XGL0 299 aa22.48■■□□□ 1.19
TRIM28-202ENST00000341753 UBFD1O14562 309 aaKnown RBP22.48■■□□□ 1.19
TRIM28-202ENST00000341753 MT-ND1P03886 318 aa22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms